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RelB Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
HokD RelB RelE ssRNA an mRNA relBE-hokD relBE-hokD_mRNA


Gensor Unit       
Name: RelB
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0034198 - cellular response to amino acid starvation
GO:0006402 - mRNA catabolic process
GO:0017148 - negative regulation of translation
GO:0090305 - nucleic acid phosphodiester bond hydrolysis
GO:0046677 - response to antibiotic
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cellular_component GO:0005887 - integral component of plasma membrane
molecular_function GO:0000986 - bacterial-type proximal promoter sequence-specific DNA binding
GO:0004521 - endoribonuclease activity
GO:0005515 - protein binding
GO:0043022 - ribosome binding
Components:
Function Name Type
protein HokD protein
protein RelB protein
complex RelB-RelE complex
protein RelE protein
simple_molecule mRNA simple_molecule
gene relBE-hokD gene
RNA relBE-hokD_mRNA RNA
simple_molecule single-stranded RNA simple_molecule


Reactions       
Showing 6 reactions
RelB relBE-hokD relBE-hokD_mRNA
Name: relBE-hokD -> relBE-hokD_mRNA
Description: Transcription of transcription unit relBE-hokD. Reaction inhibition by RelB.
Type: transcription
Pathway Components: relBE-hokD - RelB -> relBE-hokD_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor RelB protein nd nd
reactant relBE-hokD gene nd nd
product relBE-hokD_mRNA RNA nd nd
relBE-hokD_mRNA RelB
Name: relBE-hokD_mRNA -> RelB
Description: Translation of RelB
Type: translation
Pathway Components: relBE-hokD_mRNA -> RelB
Components:
Function Name Type Evidence Reference(s)
product RelB protein nd nd
reactant relBE-hokD_mRNA RNA nd nd
RelB + RelE RelB-RelE
Name: RelB + RelE -> RelB-RelE
Description: Reaction transforming RelB, RelE into RelB-RelE
Type: state transition
Pathway Components: RelB + RelE -> RelB-RelE
Components:
Function Name Type Evidence Reference(s)
reactant RelB protein nd nd
product RelB-RelE complex nd nd
reactant RelE protein nd nd
relBE-hokD_mRNA RelE
Name: relBE-hokD_mRNA -> RelE
Description: Translation of RelE
Type: translation
Pathway Components: relBE-hokD_mRNA -> RelE
Components:
Function Name Type Evidence Reference(s)
product RelE protein nd nd
reactant relBE-hokD_mRNA RNA nd nd
RelE mRNA single-stranded RNA
Name: mRNA -> single-stranded RNA
Description: Reaction transforming mRNA into single-stranded RNA
Type: state transition
Pathway Components: mRNA - RelE -> single-stranded RNA
Components:
Function Name Type Evidence Reference(s)
catalyzer RelE protein nd nd
reactant mRNA simple_molecule nd nd
product single-stranded RNA simple_molecule nd nd
relBE-hokD_mRNA HokD
Name: relBE-hokD_mRNA -> HokD
Description: Translation of HokD
Type: translation
Pathway Components: relBE-hokD_mRNA -> HokD
Components:
Function Name Type Evidence Reference(s)
product HokD protein nd nd
reactant relBE-hokD_mRNA RNA nd nd



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