RegulonDB RegulonDB

RcdA Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
Asr BluF CsgD CsgE CsgF CsgG RcdA SulA YagK YdeI asr asr_mRNA bluF bluF_mRNA csgDEFG csgDEFG_mRNA CsgA CsgA_Ext sulA sulA_mRNA yagK yagK_mRNA ydeI ydeI_mRNA CsgG CsgE CsgF


Gensor Unit       
Name: RcdA
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0043433 - negative regulation of sequence-specific DNA binding transcription factor activity
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0000986 - bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding
GO:0009637 - response to blue light
GO:0016020 - membrane
GO:0050896 - response to stimulus
GO:0042597 - periplasmic space
GO:0044010 - single-species biofilm formation
GO:0010043 - response to zinc ion
GO:0010447 - response to acidic pH
GO:0018298 - protein-chromophore linkage
Read more >
Components:
Function Name Type
RNA ydeI_mRNA RNA


Reactions       
Showing 17 reactions
asr asr_mRNA
Name: asr -> asr_mRNA
Description: Transcription of transcription unit asr; reaction activation by PhoB-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product asr_mRNA RNA nd nd
reactant asr gene nd nd
bluF bluF_mRNA
Name: bluF -> bluF_mRNA
Description: Transcription of transcription unit bluF; reaction activation by RcdA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant bluF gene nd nd
product bluF_mRNA RNA nd nd
csgDEFG csgDEFG_mRNA
Name: csgDEFG -> csgDEFG_mRNA
Description: Transcription of transcription unit csgDEFG; reaction activation by BasR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product csgDEFG_mRNA RNA nd nd
reactant csgDEFG gene nd nd
sulA sulA_mRNA
Name: sulA -> sulA_mRNA
Description: Transcription of transcription unit sulA; reaction inhibition by LexA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant sulA gene nd nd
product sulA_mRNA RNA nd nd
yagK yagK_mRNA
Name: yagK -> yagK_mRNA
Description: Transcription of transcription unit yagK; reaction inhibition by RcdA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product yagK_mRNA RNA nd nd
reactant yagK gene nd nd
ydeI ydeI_mRNA
Name: ydeI -> ydeI_mRNA
Description: Transcription of transcription unit ydeI; reaction activation by RcdA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product ydeI_mRNA RNA nd nd
reactant ydeI gene nd nd
csgDEFG_mRNA CsgF
Name: csgDEFG_mRNA -> CsgF
Description: Translation of CsgF
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant csgDEFG_mRNA RNA nd nd
product CsgF protein nd nd
CsgG + CsgE + CsgF CsgG-CsgE-CsgF
Name: CsgG + CsgE + CsgF -> CsgG-CsgE-CsgF
Description: Reaction transforming CsgG, CsgE, CsgF into CsgG-CsgE-CsgF
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product CsgG-CsgE-CsgF complex nd nd
reactant CsgF protein nd nd
reactant CsgG protein nd nd
reactant CsgE protein nd nd
CsgA_Ext CsgA
Name: CsgA_Ext -> CsgA
Description: Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant CsgA_Ext simple molecule nd nd
product CsgA simple molecule nd nd
sulA_mRNA SulA
Name: sulA_mRNA -> SulA
Description: Translation of SulA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product SulA protein nd nd
reactant sulA_mRNA RNA nd nd
bluF_mRNA BluF
Name: bluF_mRNA -> BluF
Description: Translation of BluF
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant bluF_mRNA RNA nd nd
product BluF protein nd nd
asr_mRNA Asr
Name: asr_mRNA -> Asr
Description: Translation of Asr
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant asr_mRNA RNA nd nd
product Asr protein nd nd
yagK_mRNA YagK
Name: yagK_mRNA -> YagK
Description: Translation of YagK
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant yagK_mRNA RNA nd nd
product YagK protein nd nd
csgDEFG_mRNA CsgD
Name: csgDEFG_mRNA -> CsgD
Description: Translation of CsgD
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant csgDEFG_mRNA RNA nd nd
product CsgD protein nd nd
csgDEFG_mRNA CsgG
Name: csgDEFG_mRNA -> CsgG
Description: Translation of CsgG
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant csgDEFG_mRNA RNA nd nd
product CsgG protein nd nd
csgDEFG_mRNA CsgE
Name: csgDEFG_mRNA -> CsgE
Description: Translation of CsgE
Type: translation
Components:
Function Name Type Evidence Reference(s)
product CsgE protein nd nd
reactant csgDEFG_mRNA RNA nd nd
ydeI_mRNA YdeI
Name: ydeI_mRNA -> YdeI
Description: Translation of YdeI
Type: translation
Components:
Function Name Type Evidence Reference(s)
product YdeI protein nd nd
reactant ydeI_mRNA RNA nd nd



RegulonDB