RegulonDB RegulonDB

RcdA Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
Asr BluF CsgD CsgE CsgF CsgG RcdA SulA YagK YdeI asr asr_mRNA bluF bluF_mRNA csgDEFG csgDEFG_mRNA CsgA CsgA_Ext sulA sulA_mRNA yagK yagK_mRNA ydeI ydeI_mRNA CsgG CsgE CsgF


Gensor Unit       
Name: RcdA
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0009432 - SOS response
GO:0022610 - biological adhesion
GO:0009785 - blue light signaling pathway
GO:0006974 - cellular response to DNA damage stimulus
GO:0070301 - cellular response to hydrogen peroxide
GO:0043433 - negative regulation of DNA binding transcription factor activity
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cellular_component GO:0009279 - cell outer membrane
GO:0031246 - intrinsic component of periplasmic side of cell outer membrane
GO:0030288 - outer membrane-bounded periplasmic space
GO:0042597 - periplasmic space
molecular_function GO:0000986 - bacterial-type proximal promoter sequence-specific DNA binding
GO:0050660 - flavin adenine dinucleotide binding
GO:0042802 - identical protein binding
GO:0005515 - protein binding
GO:0070491 - repressing transcription factor binding
Components: Show/Hide Components Table (25 more...)
Function Name Type
protein Asr protein
protein BluF protein
simple_molecule CsgA simple_molecule
simple_molecule CsgA_Ext simple_molecule
protein CsgD protein
protein CsgE protein
complex CsgE-CsgG complex
protein CsgF protein
protein CsgG protein
protein RcdA protein
protein SulA protein
protein YagK protein
protein YdeI protein
gene asr gene
RNA asr_mRNA RNA
gene bluF gene
RNA bluF_mRNA RNA
gene csgDEFG gene
RNA csgDEFG_mRNA RNA
gene sulA gene
RNA sulA_mRNA RNA
gene yagK gene
RNA yagK_mRNA RNA
gene ydeI gene
RNA ydeI_mRNA RNA


Reactions       
Showing 17 reactions
RcdA asr asr_mRNA
Name: asr -> asr_mRNA
Description: Transcription of transcription unit asr. Reaction activation by RcdA.
Type: transcription
Pathway Components: asr - RcdA -> asr_mRNA
Components:
Function Name Type Evidence Reference(s)
activator RcdA protein nd nd
reactant asr gene nd nd
product asr_mRNA RNA nd nd
RcdA bluF bluF_mRNA
Name: bluF -> bluF_mRNA
Description: Transcription of transcription unit bluF. Reaction activation by RcdA.
Type: transcription
Pathway Components: bluF - RcdA -> bluF_mRNA
Components:
Function Name Type Evidence Reference(s)
activator RcdA protein nd nd
reactant bluF gene nd nd
product bluF_mRNA RNA nd nd
RcdA csgDEFG csgDEFG_mRNA
Name: csgDEFG -> csgDEFG_mRNA
Description: Transcription of transcription unit csgDEFG. Reaction activation by RcdA.
Type: transcription
Pathway Components: csgDEFG - RcdA -> csgDEFG_mRNA
Components:
Function Name Type Evidence Reference(s)
activator RcdA protein nd nd
reactant csgDEFG gene nd nd
product csgDEFG_mRNA RNA nd nd
RcdA sulA sulA_mRNA
Name: sulA -> sulA_mRNA
Description: Transcription of transcription unit sulA. Reaction inhibition by RcdA.
Type: transcription
Pathway Components: sulA - RcdA -> sulA_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor RcdA protein nd nd
reactant sulA gene nd nd
product sulA_mRNA RNA nd nd
RcdA yagK yagK_mRNA
Name: yagK -> yagK_mRNA
Description: Transcription of transcription unit yagK. Reaction inhibition by RcdA.
Type: transcription
Pathway Components: yagK - RcdA -> yagK_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor RcdA protein nd nd
reactant yagK gene nd nd
product yagK_mRNA RNA nd nd
RcdA ydeI ydeI_mRNA
Name: ydeI -> ydeI_mRNA
Description: Transcription of transcription unit ydeI. Reaction activation by RcdA.
Type: transcription
Pathway Components: ydeI - RcdA -> ydeI_mRNA
Components:
Function Name Type Evidence Reference(s)
activator RcdA protein nd nd
reactant ydeI gene nd nd
product ydeI_mRNA RNA nd nd
yagK_mRNA YagK
Name: yagK_mRNA -> YagK
Description: Translation of YagK
Type: translation
Pathway Components: yagK_mRNA -> YagK
Components:
Function Name Type Evidence Reference(s)
product YagK protein nd nd
reactant yagK_mRNA RNA nd nd
csgDEFG_mRNA CsgD
Name: csgDEFG_mRNA -> CsgD
Description: Translation of CsgD
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgD
Components:
Function Name Type Evidence Reference(s)
product CsgD protein nd nd
reactant csgDEFG_mRNA RNA nd nd
csgDEFG_mRNA CsgE
Name: csgDEFG_mRNA -> CsgE
Description: Translation of CsgE
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgE
Components:
Function Name Type Evidence Reference(s)
product CsgE protein nd nd
reactant csgDEFG_mRNA RNA nd nd
CsgG + CsgE CsgE-CsgG
Name: CsgG + CsgE -> CsgE-CsgG
Description: Reaction transforming CsgG, CsgE into CsgE-CsgG
Type: state transition
Pathway Components: CsgG + CsgE -> CsgE-CsgG
Components:
Function Name Type Evidence Reference(s)
reactant CsgE protein nd nd
product CsgE-CsgG complex nd nd
reactant CsgG protein nd nd
CsgE-CsgG CsgA_Ext CsgA
Name: CsgA_Ext -> CsgA
Description: Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the cell.
Type: transport
Pathway Components: CsgA_Ext - CsgE-CsgG -> CsgA
Components:
Function Name Type Evidence Reference(s)
product CsgA simple_molecule nd nd
reactant CsgA_Ext simple_molecule nd nd
catalyzer CsgE-CsgG complex nd nd
csgDEFG_mRNA CsgF
Name: csgDEFG_mRNA -> CsgF
Description: Translation of CsgF
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgF
Components:
Function Name Type Evidence Reference(s)
product CsgF protein nd nd
reactant csgDEFG_mRNA RNA nd nd
csgDEFG_mRNA CsgG
Name: csgDEFG_mRNA -> CsgG
Description: Translation of CsgG
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgG
Components:
Function Name Type Evidence Reference(s)
product CsgG protein nd nd
reactant csgDEFG_mRNA RNA nd nd
sulA_mRNA SulA
Name: sulA_mRNA -> SulA
Description: Translation of SulA
Type: translation
Pathway Components: sulA_mRNA -> SulA
Components:
Function Name Type Evidence Reference(s)
product SulA protein nd nd
reactant sulA_mRNA RNA nd nd
bluF_mRNA BluF
Name: bluF_mRNA -> BluF
Description: Translation of BluF
Type: translation
Pathway Components: bluF_mRNA -> BluF
Components:
Function Name Type Evidence Reference(s)
product BluF protein nd nd
reactant bluF_mRNA RNA nd nd
ydeI_mRNA YdeI
Name: ydeI_mRNA -> YdeI
Description: Translation of YdeI
Type: translation
Pathway Components: ydeI_mRNA -> YdeI
Components:
Function Name Type Evidence Reference(s)
product YdeI protein nd nd
reactant ydeI_mRNA RNA nd nd
asr_mRNA Asr
Name: asr_mRNA -> Asr
Description: Translation of Asr
Type: translation
Pathway Components: asr_mRNA -> Asr
Components:
Function Name Type Evidence Reference(s)
product Asr protein nd nd
reactant asr_mRNA RNA nd nd



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