RegulonDB RegulonDB

RcsB Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
RseB RpsP RpsB RpsG RpoC rseD-rpoE-rseABC LolA RpoE safA-ydeO_mRNA RpsT RpsH RpsE phosphate RpsS RpsS RpsI RpsL HdeA RpsM rprA OsmC osmB Bdm lolA-rarA RpsE GadX RseA ydeP_mRNA bdm-sra RpsA RpsJ RpsD rseD-rpoE-rseABC_mRNA RpsL reduced thioredoxin CO2 RpsI RpsG FtsZ RpsM hdeD phosphate RpsB HdeB RpsQ L-glutamate_Ext Sra RpsP RpsR YhiD hdeAB-yhiD RpoC ROOH RseD Sra RNA:IS183 RpsJ L-glutamate RpsH gadY_mRNA RpsF gadAX_mRNA ydeP RpsF osmB_mRNA RpsU gadBC RpsC RpoA HdeD gadY YdeP RpoA RpsA RpsO safA-ydeO RpoB RpoB This Gensor Unit is not yet available FtsA rprA_mRNA RpsK RpsK RarA osmC_mRNA RpsN GadA RpsC osmC GadB RpsO gadAX RpsN OsmB RpsD SafA hdeAB-yhiD_mRNA RpoE RpsU GadC lolA-rarA_mRNA gadBC_mRNA GABA_Ext RseC thioredoxin disulfide alcohol RcsB bdm-sra_mRNA This Gensor Unit is not yet available RpsQ RcsB RpsR YdeO GABA RNA:RprA RpsT hdeD_mRNA


Gensor Unit       
Name: RcsB
Signal name: Structural changes in lipopolysaccharide.
Classification:
Groups: Posttranslational modification, protein turnover, chaperones
Transcription
Energy production and conversion
Replication, recombination and repair
Signal transduction mechanisms
Amino acid transport and metabolism
Defense mechanisms
Cell wall/membrane/envelope biogenesis
Cell cycle control, cell division, chromosome partitioning
Gene Ontology Terms (GO): biological_process GO:0006310 - DNA recombination
GO:0006260 - DNA replication
GO:0006261 - DNA-dependent DNA replication
GO:0006352 - DNA-templated transcription, initiation
GO:1902475 - L-alpha-amino acid transmembrane transport
GO:0003333 - amino acid transmembrane transport
Read more >
cellular_component GO:0032153 - cell division site
GO:0005737 - cytoplasm
GO:0009898 - cytoplasmic side of plasma membrane
GO:0005829 - cytosol
GO:0022627 - cytosolic small ribosomal subunit
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
Read more >
molecular_function GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0005524 - ATP binding
GO:0003677 - DNA binding
GO:0003700 - DNA-binding transcription factor activity
GO:0005525 - GTP binding
GO:0003924 - GTPase activity
GO:0015179 - L-amino acid transmembrane transporter activity
Read more >
Components:
  Function Name Type
  protein Bdm protein
  simple_molecule CO2 simple_molecule
  protein FtsA protein
  protein FtsZ protein
  simple_molecule GABA simple_molecule
  simple_molecule GABA_Ext simple_molecule
  protein GadA protein
  protein GadB protein
  protein GadC protein
  protein GadX protein
  protein HdeA protein
  protein HdeB protein
  protein HdeD protein
  simple_molecule L-glutamate simple_molecule
  simple_molecule L-glutamate_Ext simple_molecule
  protein LolA protein
  protein OsmB protein
  protein OsmC protein
  protein RNA:IS183 protein
  protein RNA:RprA protein
  simple_molecule ROOH simple_molecule
  protein RarA protein
  protein RcsB protein
  complex RcsB-phosphate complex
  protein RpoA protein
  protein RpoB protein
  complex RpoB-RpoC-RpoA-RpoE complex
  protein RpoC protein
  protein RpoE protein
  protein RpsA protein
  complex RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra complex
  protein RpsB protein
  protein RpsC protein
  protein RpsD protein
  protein RpsE protein
  protein RpsF protein
  protein RpsG protein
  protein RpsH protein
  protein RpsI protein
  protein RpsJ protein
  protein RpsK protein
  protein RpsL protein
  protein RpsM protein
  protein RpsN protein
  protein RpsO protein
  protein RpsP protein
  protein RpsQ protein
  protein RpsR protein
  protein RpsS protein
  protein RpsT protein
  protein RpsU protein
  protein RseA protein
  protein RseB protein
  protein RseC protein
  protein RseD protein
  protein SafA protein
  protein Sra protein
  protein YdeO protein
  protein YdeP protein
  protein YhiD protein
  simple_molecule alcohol simple_molecule
  gene bdm-sra gene
  RNA bdm-sra_mRNA RNA
  gene ftsAZ gene
  RNA ftsAZ_mRNA RNA
  gene gadAX gene
  RNA gadAX_mRNA RNA
  gene gadBC gene
  RNA gadBC_mRNA RNA
  gene gadY gene
  RNA gadY_mRNA RNA
  gene hdeAB-yhiD gene
  RNA hdeAB-yhiD_mRNA RNA
  gene hdeD gene
  RNA hdeD_mRNA RNA
  gene lolA-rarA gene
  RNA lolA-rarA_mRNA RNA
  gene osmB gene
  RNA osmB_mRNA RNA
  gene osmC gene
  RNA osmC_mRNA RNA
  simple_molecule phosphate simple_molecule
  simple_molecule reduced thioredoxin simple_molecule
  gene rprA gene
  RNA rprA_mRNA RNA
  gene rseD-rpoE-rseABC gene
  RNA rseD-rpoE-rseABC_mRNA RNA
  gene safA-ydeO gene
  RNA safA-ydeO_mRNA RNA
  simple_molecule thioredoxin disulfide simple_molecule
  gene ydeP gene
  RNA ydeP_mRNA RNA


Reactions       
Showing 46 reactions
phosphate + RcsB RcsB-phosphate
Name: phosphate + RcsB -> RcsB-phosphate
Description: Reaction transforming phosphate, RcsB into RcsB-phosphate
Type: state transition
Pathway Components: phosphate + RcsB -> RcsB-phosphate
Components:
Function Name Type
reactant RcsB protein
product RcsB-phosphate complex
reactant phosphate simple_molecule
RcsB-phosphate bdm-sra bdm-sra_mRNA
Name: bdm-sra -> bdm-sra_mRNA
Description: Transcription of transcription unit bdm-sra. Reaction activation by RcsB-phosphate.
Type: transcription
Pathway Components: bdm-sra - RcsB-phosphate -> bdm-sra_mRNA
Components:
Function Name Type
activator RcsB-phosphate complex
reactant bdm-sra gene
product bdm-sra_mRNA RNA
RcsB-phosphate ftsAZ ftsAZ_mRNA
Name: ftsAZ -> ftsAZ_mRNA
Description: Transcription of transcription unit ftsAZ. Reaction activation by RcsB-phosphate.
Type: transcription
Pathway Components: ftsAZ - RcsB-phosphate -> ftsAZ_mRNA
Components:
Function Name Type
activator RcsB-phosphate complex
reactant ftsAZ gene
product ftsAZ_mRNA RNA
RcsB-phosphate gadBC gadBC_mRNA
Name: gadBC -> gadBC_mRNA
Description: Transcription of transcription unit gadBC. Reaction activation by RcsB-phosphate.
Type: transcription
Pathway Components: gadBC - RcsB-phosphate -> gadBC_mRNA
Components:
Function Name Type
activator RcsB-phosphate complex
reactant gadBC gene
product gadBC_mRNA RNA
RcsB-phosphate gadY gadY_mRNA
Name: gadY -> gadY_mRNA
Description: Transcription of transcription unit gadY. Reaction activation by RcsB-phosphate.
Type: transcription
Pathway Components: gadY - RcsB-phosphate -> gadY_mRNA
Components:
Function Name Type
activator RcsB-phosphate complex
reactant gadY gene
product gadY_mRNA RNA
RcsB-phosphate hdeAB-yhiD hdeAB-yhiD_mRNA
Name: hdeAB-yhiD -> hdeAB-yhiD_mRNA
Description: Transcription of transcription unit hdeAB-yhiD. Reaction activation by RcsB-phosphate.
Type: transcription
Pathway Components: hdeAB-yhiD - RcsB-phosphate -> hdeAB-yhiD_mRNA
Components:
Function Name Type
activator RcsB-phosphate complex
reactant hdeAB-yhiD gene
product hdeAB-yhiD_mRNA RNA
RcsB-phosphate hdeD hdeD_mRNA
Name: hdeD -> hdeD_mRNA
Description: Transcription of transcription unit hdeD. Reaction activation by RcsB-phosphate.
Type: transcription
Pathway Components: hdeD - RcsB-phosphate -> hdeD_mRNA
Components:
Function Name Type
activator RcsB-phosphate complex
reactant hdeD gene
product hdeD_mRNA RNA
RcsB-phosphate lolA-rarA lolA-rarA_mRNA
Name: lolA-rarA -> lolA-rarA_mRNA
Description: Transcription of transcription unit lolA-rarA. Reaction activation by RcsB-phosphate.
Type: transcription
Pathway Components: lolA-rarA - RcsB-phosphate -> lolA-rarA_mRNA
Components:
Function Name Type
activator RcsB-phosphate complex
reactant lolA-rarA gene
product lolA-rarA_mRNA RNA
RcsB-phosphate osmB osmB_mRNA
Name: osmB -> osmB_mRNA
Description: Transcription of transcription unit osmB. Reaction activation by RcsB-phosphate.
Type: transcription
Pathway Components: osmB - RcsB-phosphate -> osmB_mRNA
Components:
Function Name Type
activator RcsB-phosphate complex
reactant osmB gene
product osmB_mRNA RNA
RcsB-phosphate osmC osmC_mRNA
Name: osmC -> osmC_mRNA
Description: Transcription of transcription unit osmC. Reaction activation by RcsB-phosphate.
Type: transcription
Pathway Components: osmC - RcsB-phosphate -> osmC_mRNA
Components:
Function Name Type
activator RcsB-phosphate complex
reactant osmC gene
product osmC_mRNA RNA
RcsB-phosphate rprA rprA_mRNA
Name: rprA -> rprA_mRNA
Description: Transcription of transcription unit rprA. Reaction activation by RcsB-phosphate.
Type: transcription
Pathway Components: rprA - RcsB-phosphate -> rprA_mRNA
Components:
Function Name Type
activator RcsB-phosphate complex
reactant rprA gene
product rprA_mRNA RNA
RcsB-phosphate rseD-rpoE-rseABC rseD-rpoE-rseABC_mRNA
Name: rseD-rpoE-rseABC -> rseD-rpoE-rseABC_mRNA
Description: Transcription of transcription unit rseD-rpoE-rseABC. Reaction activation by RcsB-phosphate.
Type: transcription
Pathway Components: rseD-rpoE-rseABC - RcsB-phosphate -> rseD-rpoE-rseABC_mRNA
Components:
Function Name Type
activator RcsB-phosphate complex
reactant rseD-rpoE-rseABC gene
product rseD-rpoE-rseABC_mRNA RNA
RcsB-phosphate safA-ydeO safA-ydeO_mRNA
Name: safA-ydeO -> safA-ydeO_mRNA
Description: Transcription of transcription unit safA-ydeO. Reaction activation by RcsB-phosphate.
Type: transcription
Pathway Components: safA-ydeO - RcsB-phosphate -> safA-ydeO_mRNA
Components:
Function Name Type
activator RcsB-phosphate complex
reactant safA-ydeO gene
product safA-ydeO_mRNA RNA
RcsB-phosphate ydeP ydeP_mRNA
Name: ydeP -> ydeP_mRNA
Description: Transcription of transcription unit ydeP. Reaction activation by RcsB-phosphate.
Type: transcription
Pathway Components: ydeP - RcsB-phosphate -> ydeP_mRNA
Components:
Function Name Type
activator RcsB-phosphate complex
reactant ydeP gene
product ydeP_mRNA RNA
RcsB-phosphate gadAX gadAX_mRNA
Name: gadAX -> gadAX_mRNA
Description: Transcription of transcription unit gadAX. Reaction inhibition by RcsB-phosphate.
Type: transcription
Pathway Components: gadAX - RcsB-phosphate -> gadAX_mRNA
Components:
Function Name Type
inhibitor RcsB-phosphate complex
reactant gadAX gene
product gadAX_mRNA RNA
safA-ydeO_mRNA SafA
Name: safA-ydeO_mRNA -> SafA
Description: Translation of SafA
Type: translation
Pathway Components: safA-ydeO_mRNA -> SafA
Components:
Function Name Type
product SafA protein
reactant safA-ydeO_mRNA RNA
safA-ydeO_mRNA YdeO
Name: safA-ydeO_mRNA -> YdeO
Description: Translation of YdeO
Type: translation
Pathway Components: safA-ydeO_mRNA -> YdeO
Components:
Function Name Type
product YdeO protein
reactant safA-ydeO_mRNA RNA
ftsAZ_mRNA FtsA
Name: ftsAZ_mRNA -> FtsA
Description: Translation of FtsA
Type: translation
Pathway Components: ftsAZ_mRNA -> FtsA
Components:
Function Name Type
product FtsA protein
reactant ftsAZ_mRNA RNA
ftsAZ_mRNA FtsZ
Name: ftsAZ_mRNA -> FtsZ
Description: Translation of FtsZ
Type: translation
Pathway Components: ftsAZ_mRNA -> FtsZ
Components:
Function Name Type
product FtsZ protein
reactant ftsAZ_mRNA RNA
osmB_mRNA OsmB
Name: osmB_mRNA -> OsmB
Description: Translation of OsmB
Type: translation
Pathway Components: osmB_mRNA -> OsmB
Components:
Function Name Type
product OsmB protein
reactant osmB_mRNA RNA
gadAX_mRNA GadA
Name: gadAX_mRNA -> GadA
Description: Translation of GadA
Type: translation
Pathway Components: gadAX_mRNA -> GadA
Components:
Function Name Type
product GadA protein
reactant gadAX_mRNA RNA
GadA GadB L-glutamate GABA + CO2
Name: L-glutamate -> GABA + CO2
Description: Reaction transforming L-glutamate into GABA, CO2
Type: state transition
Pathway Components: L-glutamate - GadA - GadB -> GABA + CO2
Components:
Function Name Type
product CO2 simple_molecule
product GABA simple_molecule
catalyzer GadA protein
catalyzer GadB protein
reactant L-glutamate simple_molecule
gadAX_mRNA GadX
Name: gadAX_mRNA -> GadX
Description: Translation of GadX
Type: translation
Pathway Components: gadAX_mRNA -> GadX
Components:
Function Name Type
product GadX protein
reactant gadAX_mRNA RNA
gadBC_mRNA GadB
Name: gadBC_mRNA -> GadB
Description: Translation of GadB
Type: translation
Pathway Components: gadBC_mRNA -> GadB
Components:
Function Name Type
product GadB protein
reactant gadBC_mRNA RNA
gadBC_mRNA GadC
Name: gadBC_mRNA -> GadC
Description: Translation of GadC
Type: translation
Pathway Components: gadBC_mRNA -> GadC
Components:
Function Name Type
product GadC protein
reactant gadBC_mRNA RNA
GadC L-glutamate_Ext + GABA_Ext L-glutamate + GABA
Name: L-glutamate_Ext + GABA_Ext -> L-glutamate + GABA
Description: Transport of L-glutamate_Ext, GABA_Ext through a bacterial membrane, leading to the presence of L-glutamate, GABA inside the cell.
Type: transport
Pathway Components: L-glutamate_Ext + GABA_Ext - GadC -> L-glutamate + GABA
Components:
Function Name Type
product GABA simple_molecule
reactant GABA_Ext simple_molecule
catalyzer GadC protein
product L-glutamate simple_molecule
reactant L-glutamate_Ext simple_molecule
gadY_mRNA RNA:IS183
Name: gadY_mRNA -> RNA:IS183
Description: Translation of RNA:IS183
Type: translation
Pathway Components: gadY_mRNA -> RNA:IS183
Components:
Function Name Type
product RNA:IS183 protein
reactant gadY_mRNA RNA
hdeD_mRNA HdeD
Name: hdeD_mRNA -> HdeD
Description: Translation of HdeD
Type: translation
Pathway Components: hdeD_mRNA -> HdeD
Components:
Function Name Type
product HdeD protein
reactant hdeD_mRNA RNA
hdeAB-yhiD_mRNA HdeA
Name: hdeAB-yhiD_mRNA -> HdeA
Description: Translation of HdeA
Type: translation
Pathway Components: hdeAB-yhiD_mRNA -> HdeA
Components:
Function Name Type
product HdeA protein
reactant hdeAB-yhiD_mRNA RNA
hdeAB-yhiD_mRNA HdeB
Name: hdeAB-yhiD_mRNA -> HdeB
Description: Translation of HdeB
Type: translation
Pathway Components: hdeAB-yhiD_mRNA -> HdeB
Components:
Function Name Type
product HdeB protein
reactant hdeAB-yhiD_mRNA RNA
hdeAB-yhiD_mRNA YhiD
Name: hdeAB-yhiD_mRNA -> YhiD
Description: Translation of YhiD
Type: translation
Pathway Components: hdeAB-yhiD_mRNA -> YhiD
Components:
Function Name Type
product YhiD protein
reactant hdeAB-yhiD_mRNA RNA
lolA-rarA_mRNA LolA
Name: lolA-rarA_mRNA -> LolA
Description: Translation of LolA
Type: translation
Pathway Components: lolA-rarA_mRNA -> LolA
Components:
Function Name Type
product LolA protein
reactant lolA-rarA_mRNA RNA
lolA-rarA_mRNA RarA
Name: lolA-rarA_mRNA -> RarA
Description: Translation of RarA
Type: translation
Pathway Components: lolA-rarA_mRNA -> RarA
Components:
Function Name Type
product RarA protein
reactant lolA-rarA_mRNA RNA
ydeP_mRNA YdeP
Name: ydeP_mRNA -> YdeP
Description: Translation of YdeP
Type: translation
Pathway Components: ydeP_mRNA -> YdeP
Components:
Function Name Type
product YdeP protein
reactant ydeP_mRNA RNA
bdm-sra_mRNA Bdm
Name: bdm-sra_mRNA -> Bdm
Description: Translation of Bdm
Type: translation
Pathway Components: bdm-sra_mRNA -> Bdm
Components:
Function Name Type
product Bdm protein
reactant bdm-sra_mRNA RNA
bdm-sra_mRNA Sra
Name: bdm-sra_mRNA -> Sra
Description: Translation of Sra
Type: translation
Pathway Components: bdm-sra_mRNA -> Sra
Components:
Function Name Type
product Sra protein
reactant bdm-sra_mRNA RNA
Protein Monomers Protein complex
Name: RpsO + RpsI + RpsA + RpsH + RpsU + RpsN + RpsP + RpsT + RpsQ + RpsC + RpsJ + RpsK + RpsB + RpsG + RpsM + RpsS + RpsD + RpsE + RpsR + RpsL + RpsF + Sra -> RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra
Description: Reaction transforming RpsO, RpsI, RpsA, RpsH, RpsU, RpsN, RpsP, RpsT, RpsQ, RpsC, RpsJ, RpsK, RpsB, RpsG, RpsM, RpsS, RpsD, RpsE, RpsR, RpsL, RpsF, Sra into RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra
Type: state transition
Pathway Components: RpsO + RpsI + RpsA + RpsH + RpsU + RpsN + RpsP + RpsT + RpsQ + RpsC + RpsJ + RpsK + RpsB + RpsG + RpsM + RpsS + RpsD + RpsE + RpsR + RpsL + RpsF + Sra -> RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra
Components: Show/Hide Components Table
rprA_mRNA RNA:RprA
Name: rprA_mRNA -> RNA:RprA
Description: Translation of RNA:RprA
Type: translation
Pathway Components: rprA_mRNA -> RNA:RprA
Components:
Function Name Type
product RNA:RprA protein
reactant rprA_mRNA RNA
osmC_mRNA OsmC
Name: osmC_mRNA -> OsmC
Description: Translation of OsmC
Type: translation
Pathway Components: osmC_mRNA -> OsmC
Components:
Function Name Type
product OsmC protein
reactant osmC_mRNA RNA
OsmC reduced thioredoxin + ROOH thioredoxin disulfide + alcohol
Name: reduced thioredoxin + ROOH -> thioredoxin disulfide + alcohol
Description: Reaction transforming reduced thioredoxin, ROOH into thioredoxin disulfide, alcohol
Type: state transition
Pathway Components: reduced thioredoxin + ROOH - OsmC -> thioredoxin disulfide + alcohol
Components:
Function Name Type
catalyzer OsmC protein
reactant ROOH simple_molecule
product alcohol simple_molecule
reactant reduced thioredoxin simple_molecule
product thioredoxin disulfide simple_molecule
rseD-rpoE-rseABC_mRNA RseD
Name: rseD-rpoE-rseABC_mRNA -> RseD
Description: Translation of RseD
Type: translation
Pathway Components: rseD-rpoE-rseABC_mRNA -> RseD
Components:
Function Name Type
product RseD protein
reactant rseD-rpoE-rseABC_mRNA RNA
rseD-rpoE-rseABC_mRNA RpoE
Name: rseD-rpoE-rseABC_mRNA -> RpoE
Description: Translation of RpoE
Type: translation
Pathway Components: rseD-rpoE-rseABC_mRNA -> RpoE
Components:
Function Name Type
product RpoE protein
reactant rseD-rpoE-rseABC_mRNA RNA
RpoC + RpoE + RpoB + RpoA RpoB-RpoC-RpoA-RpoE
Name: RpoC + RpoE + RpoB + RpoA -> RpoB-RpoC-RpoA-RpoE
Description: Reaction transforming RpoC, RpoE, RpoB, RpoA into RpoB-RpoC-RpoA-RpoE
Type: state transition
Pathway Components: RpoC + RpoE + RpoB + RpoA -> RpoB-RpoC-RpoA-RpoE
Components:
Function Name Type
reactant RpoA protein
reactant RpoB protein
product RpoB-RpoC-RpoA-RpoE complex
reactant RpoC protein
reactant RpoE protein
rseD-rpoE-rseABC_mRNA RseA
Name: rseD-rpoE-rseABC_mRNA -> RseA
Description: Translation of RseA
Type: translation
Pathway Components: rseD-rpoE-rseABC_mRNA -> RseA
Components:
Function Name Type
product RseA protein
reactant rseD-rpoE-rseABC_mRNA RNA
rseD-rpoE-rseABC_mRNA RseB
Name: rseD-rpoE-rseABC_mRNA -> RseB
Description: Translation of RseB
Type: translation
Pathway Components: rseD-rpoE-rseABC_mRNA -> RseB
Components:
Function Name Type
product RseB protein
reactant rseD-rpoE-rseABC_mRNA RNA
rseD-rpoE-rseABC_mRNA RseC
Name: rseD-rpoE-rseABC_mRNA -> RseC
Description: Translation of RseC
Type: translation
Pathway Components: rseD-rpoE-rseABC_mRNA -> RseC
Components:
Function Name Type
product RseC protein
reactant rseD-rpoE-rseABC_mRNA RNA



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