RegulonDB RegulonDB

RcsB Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
GABA GABA_Ext Bdm CO2 FtsA FtsZ GadA GadB GadC GadX This Gensor Unit is not yet available HdeA HdeB HdeD L-glutamate L-glutamate_Ext LolA OsmB OsmC RarA RcsB This Gensor Unit is not yet available SafA Sra YdeO YdeP YhiD bdm-sra bdm-sra_mRNA This Gensor Unit is not yet available This Gensor Unit is not yet available gadAX gadAX_mRNA gadBC gadBC_mRNA gadY gadY_mRNA hdeAB-yhiD hdeAB-yhiD_mRNA hdeD hdeD_mRNA lolA-rarA lolA-rarA_mRNA osmB osmB_mRNA osmC osmC_mRNA rprA rprA_mRNA safA-ydeO safA-ydeO_mRNA ydeP ydeP_mRNA phosphate RcsB phosphate


Gensor Unit       
Name: RcsB
Classification:
Groups: GUs related to the two-component system
Gene Ontology Terms (GO): GO:0071468 - cellular response to acidic pH
GO:0008360 - regulation of cell shape
GO:0015031 - protein transport
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0016491 - oxidoreductase activity
GO:0051082 - unfolded protein binding
GO:0016020 - membrane
GO:0003824 - catalytic activity
GO:0010447 - response to acidic pH
GO:0042953 - lipoprotein transport
GO:0005887 - integral component of plasma membrane
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Components:
Function Name Type
complex RcsB-phosphate complex


Reactions       
Showing 36 reactions
bdm-sra bdm-sra_mRNA
Name: bdm-sra -> bdm-sra_mRNA
Description: Transcription of transcription unit bdm-sra; reaction activation by RcsB-phosphate.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant bdm-sra gene nd nd
product bdm-sra_mRNA RNA nd nd
ftsAZ ftsAZ_mRNA
Name: ftsAZ -> ftsAZ_mRNA
Description: Transcription of transcription unit ftsAZ; reaction activation by RcsB-phosphate.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant ftsAZ gene nd nd
product ftsAZ_mRNA RNA nd nd
gadAX gadAX_mRNA
Name: gadAX -> gadAX_mRNA
Description: Transcription of transcription unit gadAX; reaction activation by AdiY.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant gadAX gene nd nd
product gadAX_mRNA RNA nd nd
gadBC gadBC_mRNA
Name: gadBC -> gadBC_mRNA
Description: Transcription of transcription unit gadBC; reaction activation by AdiY.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product gadBC_mRNA RNA nd nd
reactant gadBC gene nd nd
gadY gadY_mRNA
Name: gadY -> gadY_mRNA
Description: Transcription of transcription unit gadY; reaction inhibition by GadW.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant gadY gene nd nd
product gadY_mRNA RNA nd nd
hdeAB-yhiD hdeAB-yhiD_mRNA
Name: hdeAB-yhiD -> hdeAB-yhiD_mRNA
Description: Transcription of transcription unit hdeAB-yhiD; reaction inhibition by FliZ.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product hdeAB-yhiD_mRNA RNA nd nd
reactant hdeAB-yhiD gene nd nd
hdeD hdeD_mRNA
Name: hdeD -> hdeD_mRNA
Description: Transcription of transcription unit hdeD; reaction activation by GadE.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product hdeD_mRNA RNA nd nd
reactant hdeD gene nd nd
lolA-rarA lolA-rarA_mRNA
Name: lolA-rarA -> lolA-rarA_mRNA
Description: Transcription of transcription unit lolA-rarA; reaction activation by RcsB-phosphate.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant lolA-rarA gene nd nd
product lolA-rarA_mRNA RNA nd nd
osmB osmB_mRNA
Name: osmB -> osmB_mRNA
Description: Transcription of transcription unit osmB; reaction activation by RcsB-phosphate.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product osmB_mRNA RNA nd nd
reactant osmB gene nd nd
osmC osmC_mRNA
Name: osmC -> osmC_mRNA
Description: Transcription of transcription unit osmC; reaction activation by NhaR-Sodium.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product osmC_mRNA RNA nd nd
reactant osmC gene nd nd
rprA rprA_mRNA
Name: rprA -> rprA_mRNA
Description: Transcription of transcription unit rprA; reaction activation by RcsB-phosphate.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product rprA_mRNA RNA nd nd
reactant rprA gene nd nd
safA-ydeO safA-ydeO_mRNA
Name: safA-ydeO -> safA-ydeO_mRNA
Description: Transcription of transcription unit safA-ydeO; reaction activation by EvgA-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant safA-ydeO gene nd nd
product safA-ydeO_mRNA RNA nd nd
ydeP ydeP_mRNA
Name: ydeP -> ydeP_mRNA
Description: Transcription of transcription unit ydeP; reaction activation by EvgA-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product ydeP_mRNA RNA nd nd
reactant ydeP gene nd nd
safA-ydeO_mRNA YdeO
Name: safA-ydeO_mRNA -> YdeO
Description: Translation of YdeO
Type: translation
Components:
Function Name Type Evidence Reference(s)
product YdeO protein nd nd
reactant safA-ydeO_mRNA RNA nd nd
ftsAZ_mRNA FtsA
Name: ftsAZ_mRNA -> FtsA
Description: Translation of FtsA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant ftsAZ_mRNA RNA nd nd
product FtsA protein nd nd
ftsAZ_mRNA FtsZ
Name: ftsAZ_mRNA -> FtsZ
Description: Translation of FtsZ
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant ftsAZ_mRNA RNA nd nd
product FtsZ protein nd nd
gadBC_mRNA GadB
Name: gadBC_mRNA -> GadB
Description: Translation of GadB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GadB protein nd nd
reactant gadBC_mRNA RNA nd nd
L-glutamate CO2 + GABA
Name: L-glutamate -> CO2 + GABA
Description: Reaction transforming L-glutamate into CO2, GABA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product CO2 simple molecule nd nd
product GABA simple molecule nd nd
reactant L-glutamate simple molecule nd nd
hdeD_mRNA HdeD
Name: hdeD_mRNA -> HdeD
Description: Translation of HdeD
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant hdeD_mRNA RNA nd nd
product HdeD protein nd nd
lolA-rarA_mRNA RarA
Name: lolA-rarA_mRNA -> RarA
Description: Translation of RarA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product RarA protein nd nd
reactant lolA-rarA_mRNA RNA nd nd
bdm-sra_mRNA Sra
Name: bdm-sra_mRNA -> Sra
Description: Translation of Sra
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant bdm-sra_mRNA RNA nd nd
product Sra protein nd nd
hdeAB-yhiD_mRNA YhiD
Name: hdeAB-yhiD_mRNA -> YhiD
Description: Translation of YhiD
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant hdeAB-yhiD_mRNA RNA nd nd
product YhiD protein nd nd
osmC_mRNA OsmC
Name: osmC_mRNA -> OsmC
Description: Translation of OsmC
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant osmC_mRNA RNA nd nd
product OsmC protein nd nd
osmB_mRNA OsmB
Name: osmB_mRNA -> OsmB
Description: Translation of OsmB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant osmB_mRNA RNA nd nd
product OsmB protein nd nd
gadAX_mRNA GadA
Name: gadAX_mRNA -> GadA
Description: Translation of GadA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gadAX_mRNA RNA nd nd
product GadA protein nd nd
gadBC_mRNA GadC
Name: gadBC_mRNA -> GadC
Description: Translation of GadC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GadC protein nd nd
reactant gadBC_mRNA RNA nd nd
GABA_Ext + L-glutamate_Ext L-glutamate + GABA
Name: GABA_Ext + L-glutamate_Ext -> L-glutamate + GABA
Description: Transport of GABA_Ext, L-glutamate_Ext through a bacterial membrane, leading to the presence of L-glutamate, GABA inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product GABA simple molecule nd nd
reactant L-glutamate_Ext simple molecule nd nd
reactant GABA_Ext simple molecule nd nd
product L-glutamate simple molecule nd nd
rprA_mRNA RprA small regulatory RNA
Name: rprA_mRNA -> RprA small regulatory RNA
Description: Translation of RprA small regulatory RNA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant rprA_mRNA RNA nd nd
product RprA small regulatory RNA RNA nd nd
ydeP_mRNA YdeP
Name: ydeP_mRNA -> YdeP
Description: Translation of YdeP
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant ydeP_mRNA RNA nd nd
product YdeP protein nd nd
bdm-sra_mRNA Bdm
Name: bdm-sra_mRNA -> Bdm
Description: Translation of Bdm
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant bdm-sra_mRNA RNA nd nd
product Bdm protein nd nd
gadY_mRNA GadY small regulatory RNA
Name: gadY_mRNA -> GadY small regulatory RNA
Description: Translation of GadY small regulatory RNA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gadY_mRNA RNA nd nd
product GadY small regulatory RNA RNA nd nd
safA-ydeO_mRNA SafA
Name: safA-ydeO_mRNA -> SafA
Description: Translation of SafA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant safA-ydeO_mRNA RNA nd nd
product SafA protein nd nd
gadAX_mRNA GadX
Name: gadAX_mRNA -> GadX
Description: Translation of GadX
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gadAX_mRNA RNA nd nd
product GadX protein nd nd
hdeAB-yhiD_mRNA HdeB
Name: hdeAB-yhiD_mRNA -> HdeB
Description: Translation of HdeB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant hdeAB-yhiD_mRNA RNA nd nd
product HdeB protein nd nd
lolA-rarA_mRNA LolA
Name: lolA-rarA_mRNA -> LolA
Description: Translation of LolA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant lolA-rarA_mRNA RNA nd nd
product LolA protein nd nd
hdeAB-yhiD_mRNA HdeA
Name: hdeAB-yhiD_mRNA -> HdeA
Description: Translation of HdeA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product HdeA protein nd nd
reactant hdeAB-yhiD_mRNA RNA nd nd



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