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RcsB Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
GABA GABA_Ext Bdm CO2 FtsA FtsZ GadA GadB GadC GadX This Gensor Unit is not yet available HdeA HdeB HdeD L-glutamate L-glutamate_Ext LolA OsmB OsmC RarA RcsB This Gensor Unit is not yet available SafA Sra YdeO YdeP YhiD bdm-sra bdm-sra_mRNA This Gensor Unit is not yet available This Gensor Unit is not yet available gadAX gadAX_mRNA gadBC gadBC_mRNA gadY gadY_mRNA hdeAB-yhiD hdeAB-yhiD_mRNA hdeD hdeD_mRNA lolA-rarA lolA-rarA_mRNA osmB osmB_mRNA osmC osmC_mRNA rprA rprA_mRNA safA-ydeO safA-ydeO_mRNA ydeP ydeP_mRNA phosphate RcsB phosphate


Gensor Unit       
Name: RcsB
Signal name: structural changes in lipopolysaccharide.
Classification:
Groups: GUs related to the two-component system
Gene Ontology Terms (GO): biological_process GO:0006310 - DNA recombination
GO:0006261 - DNA-dependent DNA replication
GO:1902475 - L-alpha-amino acid transmembrane transport
GO:0015807 - L-amino acid transport
GO:0003333 - amino acid transmembrane transport
GO:0051301 - cell division
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cellular_component GO:0032153 - cell division site
GO:0005737 - cytoplasm
GO:0009898 - cytoplasmic side of plasma membrane
GO:0005829 - cytosol
GO:0022627 - cytosolic small ribosomal subunit
GO:0005887 - integral component of plasma membrane
GO:0016020 - membrane
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molecular_function GO:0005524 - ATP binding
GO:0003700 - DNA binding transcription factor activity
GO:0005525 - GTP binding
GO:0003924 - GTPase activity
GO:0015179 - L-amino acid transmembrane transporter activity
GO:0015297 - antiporter activity
GO:0000986 - bacterial-type proximal promoter sequence-specific DNA binding
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Components: Show/Hide Components Table (79 more...)
Function Name Type
protein Bdm protein
simple_molecule CO2 simple_molecule
protein FtsA protein
protein FtsZ protein
simple_molecule GABA simple_molecule
simple_molecule GABA_Ext simple_molecule
protein GadA protein
protein GadB protein
protein GadC protein
protein GadX protein
protein HdeA protein
protein HdeB protein
protein HdeD protein
simple_molecule L-glutamate simple_molecule
simple_molecule L-glutamate_Ext simple_molecule
protein LolA protein
protein OsmB protein
protein OsmC protein
protein RNA:IS183 protein
protein RNA:RprA protein
simple_molecule ROOH simple_molecule
protein RarA protein
protein RcsB protein
protein RpsA protein
complex RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra complex
protein RpsB protein
protein RpsC protein
protein RpsD protein
protein RpsE protein
protein RpsF protein
protein RpsG protein
protein RpsH protein
protein RpsI protein
protein RpsJ protein
protein RpsK protein
protein RpsL protein
protein RpsM protein
protein RpsN protein
protein RpsO protein
protein RpsP protein
protein RpsQ protein
protein RpsR protein
protein RpsS protein
protein RpsT protein
protein RpsU protein
protein SafA protein
protein Sra protein
protein YdeO protein
protein YdeP protein
protein YhiD protein
simple_molecule alcohol simple_molecule
gene bdm-sra gene
RNA bdm-sra_mRNA RNA
gene ftsAZ gene
RNA ftsAZ_mRNA RNA
gene gadAX gene
RNA gadAX_mRNA RNA
gene gadBC gene
RNA gadBC_mRNA RNA
gene gadY gene
RNA gadY_mRNA RNA
gene hdeAB-yhiD gene
RNA hdeAB-yhiD_mRNA RNA
gene hdeD gene
RNA hdeD_mRNA RNA
gene lolA-rarA gene
RNA lolA-rarA_mRNA RNA
gene osmB gene
RNA osmB_mRNA RNA
gene osmC gene
RNA osmC_mRNA RNA
simple_molecule reduced thioredoxin simple_molecule
gene rprA gene
RNA rprA_mRNA RNA
gene safA-ydeO gene
RNA safA-ydeO_mRNA RNA
simple_molecule thioredoxin disulfide simple_molecule
gene ydeP gene
RNA ydeP_mRNA RNA


Reactions       
Showing 38 reactions
RcsB bdm-sra bdm-sra_mRNA
Name: bdm-sra -> bdm-sra_mRNA
Description: Transcription of transcription unit bdm-sra. Reaction activation by RcsB.
Type: transcription
Pathway Components: bdm-sra - RcsB -> bdm-sra_mRNA
Components:
Function Name Type Evidence Reference(s)
activator RcsB protein nd nd
reactant bdm-sra gene nd nd
product bdm-sra_mRNA RNA nd nd
RcsB ftsAZ ftsAZ_mRNA
Name: ftsAZ -> ftsAZ_mRNA
Description: Transcription of transcription unit ftsAZ. Reaction activation by RcsB.
Type: transcription
Pathway Components: ftsAZ - RcsB -> ftsAZ_mRNA
Components:
Function Name Type Evidence Reference(s)
activator RcsB protein nd nd
reactant ftsAZ gene nd nd
product ftsAZ_mRNA RNA nd nd
RcsB gadAX gadAX_mRNA
Name: gadAX -> gadAX_mRNA
Description: Transcription of transcription unit gadAX. Reaction inhibition by RcsB.
Type: transcription
Pathway Components: gadAX - RcsB -> gadAX_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor RcsB protein nd nd
reactant gadAX gene nd nd
product gadAX_mRNA RNA nd nd
RcsB gadBC gadBC_mRNA
Name: gadBC -> gadBC_mRNA
Description: Transcription of transcription unit gadBC. Reaction activation by RcsB.
Type: transcription
Pathway Components: gadBC - RcsB -> gadBC_mRNA
Components:
Function Name Type Evidence Reference(s)
activator RcsB protein nd nd
reactant gadBC gene nd nd
product gadBC_mRNA RNA nd nd
RcsB gadY gadY_mRNA
Name: gadY -> gadY_mRNA
Description: Transcription of transcription unit gadY. Reaction activation by RcsB.
Type: transcription
Pathway Components: gadY - RcsB -> gadY_mRNA
Components:
Function Name Type Evidence Reference(s)
activator RcsB protein nd nd
reactant gadY gene nd nd
product gadY_mRNA RNA nd nd
RcsB hdeAB-yhiD hdeAB-yhiD_mRNA
Name: hdeAB-yhiD -> hdeAB-yhiD_mRNA
Description: Transcription of transcription unit hdeAB-yhiD. Reaction activation by RcsB.
Type: transcription
Pathway Components: hdeAB-yhiD - RcsB -> hdeAB-yhiD_mRNA
Components:
Function Name Type Evidence Reference(s)
activator RcsB protein nd nd
reactant hdeAB-yhiD gene nd nd
product hdeAB-yhiD_mRNA RNA nd nd
RcsB hdeD hdeD_mRNA
Name: hdeD -> hdeD_mRNA
Description: Transcription of transcription unit hdeD. Reaction activation by RcsB.
Type: transcription
Pathway Components: hdeD - RcsB -> hdeD_mRNA
Components:
Function Name Type Evidence Reference(s)
activator RcsB protein nd nd
reactant hdeD gene nd nd
product hdeD_mRNA RNA nd nd
RcsB lolA-rarA lolA-rarA_mRNA
Name: lolA-rarA -> lolA-rarA_mRNA
Description: Transcription of transcription unit lolA-rarA. Reaction activation by RcsB.
Type: transcription
Pathway Components: lolA-rarA - RcsB -> lolA-rarA_mRNA
Components:
Function Name Type Evidence Reference(s)
activator RcsB protein nd nd
reactant lolA-rarA gene nd nd
product lolA-rarA_mRNA RNA nd nd
RcsB osmB osmB_mRNA
Name: osmB -> osmB_mRNA
Description: Transcription of transcription unit osmB. Reaction activation by RcsB.
Type: transcription
Pathway Components: osmB - RcsB -> osmB_mRNA
Components:
Function Name Type Evidence Reference(s)
activator RcsB protein nd nd
reactant osmB gene nd nd
product osmB_mRNA RNA nd nd
RcsB osmC osmC_mRNA
Name: osmC -> osmC_mRNA
Description: Transcription of transcription unit osmC. Reaction activation by RcsB.
Type: transcription
Pathway Components: osmC - RcsB -> osmC_mRNA
Components:
Function Name Type Evidence Reference(s)
activator RcsB protein nd nd
reactant osmC gene nd nd
product osmC_mRNA RNA nd nd
RcsB rprA rprA_mRNA
Name: rprA -> rprA_mRNA
Description: Transcription of transcription unit rprA. Reaction activation by RcsB.
Type: transcription
Pathway Components: rprA - RcsB -> rprA_mRNA
Components:
Function Name Type Evidence Reference(s)
activator RcsB protein nd nd
reactant rprA gene nd nd
product rprA_mRNA RNA nd nd
RcsB safA-ydeO safA-ydeO_mRNA
Name: safA-ydeO -> safA-ydeO_mRNA
Description: Transcription of transcription unit safA-ydeO. Reaction activation by RcsB.
Type: transcription
Pathway Components: safA-ydeO - RcsB -> safA-ydeO_mRNA
Components:
Function Name Type Evidence Reference(s)
activator RcsB protein nd nd
reactant safA-ydeO gene nd nd
product safA-ydeO_mRNA RNA nd nd
RcsB ydeP ydeP_mRNA
Name: ydeP -> ydeP_mRNA
Description: Transcription of transcription unit ydeP. Reaction activation by RcsB.
Type: transcription
Pathway Components: ydeP - RcsB -> ydeP_mRNA
Components:
Function Name Type Evidence Reference(s)
activator RcsB protein nd nd
reactant ydeP gene nd nd
product ydeP_mRNA RNA nd nd
ftsAZ_mRNA FtsA
Name: ftsAZ_mRNA -> FtsA
Description: Translation of FtsA
Type: translation
Pathway Components: ftsAZ_mRNA -> FtsA
Components:
Function Name Type Evidence Reference(s)
product FtsA protein nd nd
reactant ftsAZ_mRNA RNA nd nd
ftsAZ_mRNA FtsZ
Name: ftsAZ_mRNA -> FtsZ
Description: Translation of FtsZ
Type: translation
Pathway Components: ftsAZ_mRNA -> FtsZ
Components:
Function Name Type Evidence Reference(s)
product FtsZ protein nd nd
reactant ftsAZ_mRNA RNA nd nd
hdeAB-yhiD_mRNA HdeA
Name: hdeAB-yhiD_mRNA -> HdeA
Description: Translation of HdeA
Type: translation
Pathway Components: hdeAB-yhiD_mRNA -> HdeA
Components:
Function Name Type Evidence Reference(s)
product HdeA protein nd nd
reactant hdeAB-yhiD_mRNA RNA nd nd
hdeAB-yhiD_mRNA HdeB
Name: hdeAB-yhiD_mRNA -> HdeB
Description: Translation of HdeB
Type: translation
Pathway Components: hdeAB-yhiD_mRNA -> HdeB
Components:
Function Name Type Evidence Reference(s)
product HdeB protein nd nd
reactant hdeAB-yhiD_mRNA RNA nd nd
hdeAB-yhiD_mRNA YhiD
Name: hdeAB-yhiD_mRNA -> YhiD
Description: Translation of YhiD
Type: translation
Pathway Components: hdeAB-yhiD_mRNA -> YhiD
Components:
Function Name Type Evidence Reference(s)
product YhiD protein nd nd
reactant hdeAB-yhiD_mRNA RNA nd nd
rprA_mRNA RNA:RprA
Name: rprA_mRNA -> RNA:RprA
Description: Translation of RNA:RprA
Type: translation
Pathway Components: rprA_mRNA -> RNA:RprA
Components:
Function Name Type Evidence Reference(s)
product RNA:RprA protein nd nd
reactant rprA_mRNA RNA nd nd
ydeP_mRNA YdeP
Name: ydeP_mRNA -> YdeP
Description: Translation of YdeP
Type: translation
Pathway Components: ydeP_mRNA -> YdeP
Components:
Function Name Type Evidence Reference(s)
product YdeP protein nd nd
reactant ydeP_mRNA RNA nd nd
gadY_mRNA RNA:IS183
Name: gadY_mRNA -> RNA:IS183
Description: Translation of RNA:IS183
Type: translation
Pathway Components: gadY_mRNA -> RNA:IS183
Components:
Function Name Type Evidence Reference(s)
product RNA:IS183 protein nd nd
reactant gadY_mRNA RNA nd nd
gadBC_mRNA GadB
Name: gadBC_mRNA -> GadB
Description: Translation of GadB
Type: translation
Pathway Components: gadBC_mRNA -> GadB
Components:
Function Name Type Evidence Reference(s)
product GadB protein nd nd
reactant gadBC_mRNA RNA nd nd
GadA GadB L-glutamate GABA + CO2
Name: L-glutamate -> GABA + CO2
Description: Reaction transforming L-glutamate into GABA, CO2
Type: state transition
Pathway Components: L-glutamate - GadA - GadB -> GABA + CO2
Components:
Function Name Type Evidence Reference(s)
product CO2 simple_molecule nd nd
product GABA simple_molecule nd nd
catalyzer GadA protein nd nd
catalyzer GadB protein nd nd
reactant L-glutamate simple_molecule nd nd
gadBC_mRNA GadC
Name: gadBC_mRNA -> GadC
Description: Translation of GadC
Type: translation
Pathway Components: gadBC_mRNA -> GadC
Components:
Function Name Type Evidence Reference(s)
product GadC protein nd nd
reactant gadBC_mRNA RNA nd nd
GadC L-glutamate_Ext + GABA_Ext L-glutamate + GABA
Name: L-glutamate_Ext + GABA_Ext -> L-glutamate + GABA
Description: Transport of L-glutamate_Ext, GABA_Ext through a bacterial membrane, leading to the presence of L-glutamate, GABA inside the cell.
Type: transport
Pathway Components: L-glutamate_Ext + GABA_Ext - GadC -> L-glutamate + GABA
Components:
Function Name Type Evidence Reference(s)
product GABA simple_molecule nd nd
reactant GABA_Ext simple_molecule nd nd
catalyzer GadC protein nd nd
product L-glutamate simple_molecule nd nd
reactant L-glutamate_Ext simple_molecule nd nd
bdm-sra_mRNA Bdm
Name: bdm-sra_mRNA -> Bdm
Description: Translation of Bdm
Type: translation
Pathway Components: bdm-sra_mRNA -> Bdm
Components:
Function Name Type Evidence Reference(s)
product Bdm protein nd nd
reactant bdm-sra_mRNA RNA nd nd
bdm-sra_mRNA Sra
Name: bdm-sra_mRNA -> Sra
Description: Translation of Sra
Type: translation
Pathway Components: bdm-sra_mRNA -> Sra
Components:
Function Name Type Evidence Reference(s)
product Sra protein nd nd
reactant bdm-sra_mRNA RNA nd nd
Protein Monomers Protein complex
Name: RpsG + RpsP + RpsO + RpsF + RpsI + RpsD + RpsR + RpsC + RpsJ + RpsA + RpsM + RpsK + RpsS + RpsB + RpsL + RpsQ + RpsU + RpsH + RpsE + RpsT + RpsN + Sra -> RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra
Description: Reaction transforming RpsG, RpsP, RpsO, RpsF, RpsI, RpsD, RpsR, RpsC, RpsJ, RpsA, RpsM, RpsK, RpsS, RpsB, RpsL, RpsQ, RpsU, RpsH, RpsE, RpsT, RpsN, Sra into RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra
Type: state transition
Pathway Components: RpsG + RpsP + RpsO + RpsF + RpsI + RpsD + RpsR + RpsC + RpsJ + RpsA + RpsM + RpsK + RpsS + RpsB + RpsL + RpsQ + RpsU + RpsH + RpsE + RpsT + RpsN + Sra -> RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra
Components: Show/Hide Components Table
hdeD_mRNA HdeD
Name: hdeD_mRNA -> HdeD
Description: Translation of HdeD
Type: translation
Pathway Components: hdeD_mRNA -> HdeD
Components:
Function Name Type Evidence Reference(s)
product HdeD protein nd nd
reactant hdeD_mRNA RNA nd nd
safA-ydeO_mRNA SafA
Name: safA-ydeO_mRNA -> SafA
Description: Translation of SafA
Type: translation
Pathway Components: safA-ydeO_mRNA -> SafA
Components:
Function Name Type Evidence Reference(s)
product SafA protein nd nd
reactant safA-ydeO_mRNA RNA nd nd
safA-ydeO_mRNA YdeO
Name: safA-ydeO_mRNA -> YdeO
Description: Translation of YdeO
Type: translation
Pathway Components: safA-ydeO_mRNA -> YdeO
Components:
Function Name Type Evidence Reference(s)
product YdeO protein nd nd
reactant safA-ydeO_mRNA RNA nd nd
lolA-rarA_mRNA LolA
Name: lolA-rarA_mRNA -> LolA
Description: Translation of LolA
Type: translation
Pathway Components: lolA-rarA_mRNA -> LolA
Components:
Function Name Type Evidence Reference(s)
product LolA protein nd nd
reactant lolA-rarA_mRNA RNA nd nd
lolA-rarA_mRNA RarA
Name: lolA-rarA_mRNA -> RarA
Description: Translation of RarA
Type: translation
Pathway Components: lolA-rarA_mRNA -> RarA
Components:
Function Name Type Evidence Reference(s)
product RarA protein nd nd
reactant lolA-rarA_mRNA RNA nd nd
gadAX_mRNA GadA
Name: gadAX_mRNA -> GadA
Description: Translation of GadA
Type: translation
Pathway Components: gadAX_mRNA -> GadA
Components:
Function Name Type Evidence Reference(s)
product GadA protein nd nd
reactant gadAX_mRNA RNA nd nd
gadAX_mRNA GadX
Name: gadAX_mRNA -> GadX
Description: Translation of GadX
Type: translation
Pathway Components: gadAX_mRNA -> GadX
Components:
Function Name Type Evidence Reference(s)
product GadX protein nd nd
reactant gadAX_mRNA RNA nd nd
osmB_mRNA OsmB
Name: osmB_mRNA -> OsmB
Description: Translation of OsmB
Type: translation
Pathway Components: osmB_mRNA -> OsmB
Components:
Function Name Type Evidence Reference(s)
product OsmB protein nd nd
reactant osmB_mRNA RNA nd nd
osmC_mRNA OsmC
Name: osmC_mRNA -> OsmC
Description: Translation of OsmC
Type: translation
Pathway Components: osmC_mRNA -> OsmC
Components:
Function Name Type Evidence Reference(s)
product OsmC protein nd nd
reactant osmC_mRNA RNA nd nd
OsmC reduced thioredoxin + ROOH thioredoxin disulfide + alcohol
Name: reduced thioredoxin + ROOH -> thioredoxin disulfide + alcohol
Description: Reaction transforming reduced thioredoxin, ROOH into thioredoxin disulfide, alcohol
Type: state transition
Pathway Components: reduced thioredoxin + ROOH - OsmC -> thioredoxin disulfide + alcohol
Components:
Function Name Type Evidence Reference(s)
catalyzer OsmC protein nd nd
reactant ROOH simple_molecule nd nd
product alcohol simple_molecule nd nd
reactant reduced thioredoxin simple_molecule nd nd
product thioredoxin disulfide simple_molecule nd nd



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