RegulonDB RegulonDB

PhoP Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
(3E,5Z)-tetradecadienoate (3E,5Z)-tetradecadienoate_Ext (Z)-2-methyl-peroxyaminoacrylate (Z)-2-methylureidoperacrylic acid peroxy aminoacrylate ureidoperacrylic acid 10-formyl-tetrahydrofolate 2-oxobutyrate ketoglutarate hydracrylic acid 3-ureidoacrylate L-alanine 5-phospho-beta-D-ribosyl-amine 5-phospho-ribosyl-glycineamide ADP-glucose AcrA AcrB AcrD AcrE AcrF ArgD BorD CysB D-glucosamine-6-phosphate DcuD EmrA EmrB EmrK EmrY EntS FMN Reduced FMN FadL GadE GadW GlgA GlgB GlgC GlgP GlgX HdeA HdeB HdeD HemL IMP IraM Re endotoxin asp L-aspartate-semialdehyde L-aspartyl-4-P cystathionine L-cysteine L-glutamate homo-ser MacA MacB MalS MdtA MdtB MdtC MdtE MdtF MetB MetL magnesium magnesium_Ext MgrB This Gensor Unit is not yet available MgtA MgtL N-acetyl-D-glucosamine-6-phosphate 2-acetamido-5-oxopentanoate acetylornithine N-Succinyl-2-L-amino-6-oxoheptanedioate L,L-SDAP NagA nickel nickel_Ext azaserine OmpT PagP PhoP PhoQ phosphate PurD PurH RstA RstB RutA RutB RutC RutD RutE RutF RutG SafA SlyB TolC TreR YbjG YdeO YdeP YgiA YgiB YgiC YhiD YneM YrbL amylose a debranched limit dextrin a drug a drug_Ext a glycerol ester glycogen a limit dextrin LCFA LCFA_Ext a macrolide antibiotic a macrolide antibiotic_Ext peptides a phospholipid Try a reduced electron acceptor acetate acrAB acrAB_mRNA alpha-D-glucose 1-phosphate aminoacrylate AICAR ammonia an oxidized electron acceptor argD argD_mRNA borD borD_mRNA carbamate cysB cysB_mRNA dcuD dcuD_mRNA UPP (ambiguous) ditrans,polycis-undecaprenyl phosphate PP enterobactin enterobactin_Ext fadL fadL_mRNA gadE gadE_mRNA This Gensor Unit is not yet available This Gensor Unit is not yet available This Gensor Unit is not yet available This Gensor Unit is not yet available glgBXCAP glgBXCAP_mRNA glutamate-1-semialdehyde glycine hdeAB-yhiD hdeAB-yhiD_mRNA hdeD hdeD_mRNA hemL hemL_mRNA hepta-acylated KDO2-lipid A iraM iraM_mRNA malS malS_mRNA malonate-S-ald maltohexaose maltotetraose metBL metBL_mRNA mgrB mgrB_mRNA mgrR mgrR_mRNA mgtLA mgtLA_mRNA This Gensor Unit is not yet available This Gensor Unit is not yet available ompT ompT_mRNA oxygen pagP pagP_mRNA phoPQ phoPQ_mRNA phosphate phosphoribosyl-formamido-carboxamide purHD purHD_mRNA rstAB rstAB_mRNA rutABCDEFG rutABCDEFG_mRNA safA-ydeO safA-ydeO_mRNA slyB slyB_mRNA succinate THF thymine This Gensor Unit is not yet available This Gensor Unit is not yet available treR treR_mRNA uracil ybjG ybjG_mRNA ydeP ydeP_mRNA This Gensor Unit is not yet available This Gensor Unit is not yet available yrbL yrbL_mRNA PhoP phosphate AcrA TolC AcrB AcrD AcrA TolC TolC MacB MacA TolC MdtE MdtF AcrE AcrF TolC EmrA EmrB TolC EmrK EmrY TolC EntS TolC TolC MdtC MdtB MdtA phosphate phosphate phosphate phosphate phosphate


Gensor Unit       
Name: PhoP
Classification:
Groups: Lipid transport and metabolism
Inorganic ion transport and metabolism
Transcription
Carbohydrate transport and metabolism
Energy production and conversion
Signal transduction mechanisms
Amino acid transport and metabolism
Coenzyme transport and metabolism
Defense mechanisms
Cell wall/membrane/envelope biogenesis
Nucleotide transport and metabolism
Gene Ontology Terms (GO): biological_process GO:0006189 - 'de novo' IMP biosynthetic process
GO:0099132 - ATP hydrolysis coupled cation transmembrane transport
GO:0015740 - C4-dicarboxylate transport
GO:0006046 - N-acetylglucosamine catabolic process
GO:0006044 - N-acetylglucosamine metabolic process
GO:0019262 - N-acetylneuraminate catabolic process
Read more >
cellular_component GO:1990196 - MacAB-TolC complex
GO:0031225 - anchored component of membrane
GO:0009279 - cell outer membrane
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:1990281 - efflux pump complex
GO:0016021 - integral component of membrane
Read more >
molecular_function GO:0003844 - 1,4-alpha-glucan branching enzyme activity
GO:0102752 - 1,4-alpha-glucan branching enzyme activity (using a glucosylated glycogenin as primer for glycogen synthesis)
GO:0035527 - 3-hydroxypropionate dehydrogenase (NADP+) activity
GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0016208 - AMP binding
GO:0005524 - ATP binding
GO:0042623 - ATPase activity, coupled
Read more >
Components:
  Function Name Type
  simple_molecule α-D-glucosamine phosphate simple_molecule
  simple_molecule α-limit dextrin simple_molecule
  simple_molecule (2Z)-2-aminobut-2-enoate simple_molecule
  simple_molecule (Z)-2-methyl-peroxyaminoacrylate simple_molecule
  simple_molecule (Z)-2-methylureidoperacrylic acid simple_molecule
  simple_molecule 1-palmitoyl-2-acyl-phosphatidylcholine simple_molecule
  simple_molecule 10-formyl-THF mono-L-glutamate simple_molecule
  simple_molecule 2-Lysolecithin simple_molecule
  simple_molecule 2-acetamido-5-oxopentanoate simple_molecule
  simple_molecule 2-oxobutyrate simple_molecule
  simple_molecule 3-ureidoacrylate simple_molecule
  simple_molecule 5'-IMP simple_molecule
  simple_molecule 5'-p-ribosylglycinamide simple_molecule
  simple_molecule 5-aminolevulinate simple_molecule
  simple_molecule 5-phosphoribosylamine simple_molecule
  simple_molecule A(H2) simple_molecule
  simple_molecule ADP-glucose simple_molecule
  simple_molecule AICAR simple_molecule
  protein AcrA protein
  complex AcrA-TolC-AcrB complex
  protein AcrB protein
  protein AcrD protein
  complex AcrD-AcrA-TolC complex
  protein AcrE protein
  complex AcrE-AcrF-TolC complex
  protein AcrF protein
  protein ArgD protein
  protein BorD protein
  protein CysB protein
  simple_molecule D-glucose 1-phosphate simple_molecule
  protein DcuD protein
  protein EmrA protein
  complex EmrA-EmrB-TolC complex
  protein EmrB protein
  protein EmrK protein
  complex EmrK-EmrY-TolC complex
  protein EmrY protein
  simple_molecule FAICAR simple_molecule
  protein FadL protein
  protein GadE protein
  protein GadW protein
  protein GlgA protein
  protein GlgB protein
  protein GlgC protein
  protein GlgP protein
  protein GlgX protein
  protein HdeA protein
  protein HdeB protein
  protein HdeD protein
  protein HemL protein
  protein IraM protein
  simple_molecule L,L-SDAP simple_molecule
  simple_molecule L-glutamate simple_molecule
  simple_molecule LCFA simple_molecule
  simple_molecule LCFA_Ext simple_molecule
  protein MacA protein
  protein MacB protein
  protein MalS protein
  protein MdtA protein
  protein MdtB protein
  protein MdtC protein
  protein MdtE protein
  protein MdtF protein
  protein MetB protein
  protein MetL protein
  protein MgrB protein
  protein MgtA protein
  protein MgtL protein
  protein MgtS protein
  simple_molecule N-Succinyl-2-L-amino-6-oxoheptanedioate simple_molecule
  simple_molecule N-acetyl-α-D-glucosamine 6-phosphate simple_molecule
  protein NagA protein
  protein OmpT protein
  protein PagP protein
  protein PhoP protein
  complex PhoP-phosphate complex
  protein PhoQ protein
  protein PurD protein
  protein PurH protein
  protein RNA:GadF protein
  protein RNA:MgrR protein
  protein RcsB protein
  complex RcsB-GadE complex
  simple_molecule Reduced FMN simple_molecule
  protein RstA protein
  protein RstB protein
  protein RutA protein
  protein RutB protein
  protein RutC protein
  protein RutD protein
  protein RutE protein
  protein RutF protein
  protein RutG protein
  protein SafA protein
  protein SlyB protein
  simple_molecule THF polyglutamate simple_molecule
  protein TolC protein
  complex TolC-MacB-MacA complex
  complex TolC-MdtC-MdtB-MdtA complex
  complex TolC-MdtE-MdtF complex
  protein TreR protein
  simple_molecule UPP (ambiguous) simple_molecule
  protein UrpT protein
  protein UspT protein
  protein YbjG protein
  protein YdeO protein
  protein YdeP protein
  protein YgiA protein
  protein YgiB protein
  protein YgiC protein
  protein YhiD protein
  protein YrbL protein
  simple_molecule acceptors simple_molecule
  simple_molecule acetate simple_molecule
  simple_molecule acetylornithine simple_molecule
  gene acrAB gene
  RNA acrAB_mRNA RNA
  simple_molecule acriflavine simple_molecule
  simple_molecule acriflavine_Ext simple_molecule
  simple_molecule aminoacrylate simple_molecule
  simple_molecule ammonium simple_molecule
  simple_molecule amylose simple_molecule
  gene argD gene
  RNA argD_mRNA RNA
  simple_molecule aspartate simple_molecule
  simple_molecule aspartate-semialdehyde simple_molecule
  simple_molecule aspartyl-4-P simple_molecule
  gene borD gene
  RNA borD_mRNA RNA
  simple_molecule caprate simple_molecule
  simple_molecule caprate_Ext simple_molecule
  simple_molecule carbamate simple_molecule
  simple_molecule chenodiol simple_molecule
  simple_molecule chenodiol_Ext simple_molecule
  gene cysB gene
  RNA cysB_mRNA RNA
  simple_molecule cystathionine simple_molecule
  simple_molecule cysteine simple_molecule
  gene dcuD gene
  RNA dcuD_mRNA RNA
  simple_molecule debranched α-limit dextrin simple_molecule
  simple_molecule deoxycholate simple_molecule
  simple_molecule deoxycholate_Ext simple_molecule
  simple_molecule diphosphate simple_molecule
  simple_molecule ditrans,polycis-undecaprenyl phosphate simple_molecule
  simple_molecule drug simple_molecule
  simple_molecule drug_Ext simple_molecule
  simple_molecule enterobactin simple_molecule
  simple_molecule enterobactin_Ext simple_molecule
  gene fadL gene
  RNA fadL_mRNA RNA
  simple_molecule flavin mononucleotide simple_molecule
  gene gadEF gene
  RNA gadEF_mRNA RNA
  gene gadW gene
  RNA gadW_mRNA RNA
  gene glgAP gene
  RNA glgAP_mRNA RNA
  gene glgBXCAP gene
  RNA glgBXCAP_mRNA RNA
  simple_molecule glutamate 1-semialdehyde simple_molecule
  simple_molecule glycine simple_molecule
  simple_molecule glycogen simple_molecule
  gene hdeAB-yhiD gene
  RNA hdeAB-yhiD_mRNA RNA
  gene hdeD gene
  RNA hdeD_mRNA RNA
  gene hemL gene
  RNA hemL_mRNA RNA
  simple_molecule hexane simple_molecule
  simple_molecule hexane_Ext simple_molecule
  simple_molecule homo-ser simple_molecule
  simple_molecule hydracrylic acid simple_molecule
  gene iraM gene
  RNA iraM_mRNA RNA
  simple_molecule ketoglutarate simple_molecule
  simple_molecule lipid B simple_molecule
  simple_molecule macrolide antibiotic simple_molecule
  simple_molecule macrolide antibiotic_Ext simple_molecule
  simple_molecule magnesium simple_molecule
  simple_molecule magnesium_Ext simple_molecule
  gene malS gene
  RNA malS_mRNA RNA
  simple_molecule malonate-S-ald simple_molecule
  simple_molecule maltohexaose simple_molecule
  simple_molecule maltotetraose simple_molecule
  gene metBL gene
  RNA metBL_mRNA RNA
  gene mgrB gene
  RNA mgrB_mRNA RNA
  gene mgrR gene
  RNA mgrR_mRNA RNA
  gene mgtLA gene
  RNA mgtLA_mRNA RNA
  gene mgtS gene
  RNA mgtS_mRNA RNA
  gene nagA gene
  RNA nagA_mRNA RNA
  simple_molecule novobiocin simple_molecule
  simple_molecule novobiocin_Ext simple_molecule
  gene ompT gene
  RNA ompT_mRNA RNA
  simple_molecule oxygen simple_molecule
  gene pagP gene
  RNA pagP_mRNA RNA
  simple_molecule peptide simple_molecule
  simple_molecule peroxy aminoacrylate simple_molecule
  gene phoPQ gene
  RNA phoPQ_mRNA RNA
  simple_molecule phosphate simple_molecule
  simple_molecule protein simple_molecule
  gene purHD gene
  RNA purHD_mRNA RNA
  gene rstAB gene
  RNA rstAB_mRNA RNA
  gene rutABCDEFG gene
  RNA rutABCDEFG_mRNA RNA
  gene safA-ydeO gene
  RNA safA-ydeO_mRNA RNA
  gene slyB gene
  RNA slyB_mRNA RNA
  simple_molecule succinate simple_molecule
  simple_molecule succinyl-homoserine simple_molecule
  simple_molecule synthetic E. coli lipid A simple_molecule
  simple_molecule thymine simple_molecule
  gene tolC-ygiABC gene
  RNA tolC-ygiABC_mRNA RNA
  gene treR gene
  RNA treR_mRNA RNA
  simple_molecule uracil simple_molecule
  simple_molecule uracil_Ext simple_molecule
  simple_molecule ureidoperacrylic acid simple_molecule
  gene ybjG gene
  RNA ybjG_mRNA RNA
  gene ydeP gene
  RNA ydeP_mRNA RNA
  gene yrbL gene
  RNA yrbL_mRNA RNA


Reactions       
Showing 149 reactions
phosphate + PhoP PhoP-phosphate
Name: phosphate + PhoP -> PhoP-phosphate
Description: Reaction transforming phosphate, PhoP into PhoP-phosphate
Type: state transition
Pathway Components: phosphate + PhoP -> PhoP-phosphate
Components:
Function Name Type
reactant PhoP protein
product PhoP-phosphate complex
reactant phosphate simple_molecule
PhoP-phosphate borD borD_mRNA
Name: borD -> borD_mRNA
Description: Transcription of transcription unit borD. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: borD - PhoP-phosphate -> borD_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant borD gene
product borD_mRNA RNA
PhoP-phosphate cysB cysB_mRNA
Name: cysB -> cysB_mRNA
Description: Transcription of transcription unit cysB. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: cysB - PhoP-phosphate -> cysB_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant cysB gene
product cysB_mRNA RNA
PhoP-phosphate fadL fadL_mRNA
Name: fadL -> fadL_mRNA
Description: Transcription of transcription unit fadL. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: fadL - PhoP-phosphate -> fadL_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant fadL gene
product fadL_mRNA RNA
PhoP-phosphate gadEF gadEF_mRNA
Name: gadEF -> gadEF_mRNA
Description: Transcription of transcription unit gadEF. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: gadEF - PhoP-phosphate -> gadEF_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant gadEF gene
product gadEF_mRNA RNA
PhoP-phosphate gadW gadW_mRNA
Name: gadW -> gadW_mRNA
Description: Transcription of transcription unit gadW. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: gadW - PhoP-phosphate -> gadW_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant gadW gene
product gadW_mRNA RNA
PhoP-phosphate glgAP glgAP_mRNA
Name: glgAP -> glgAP_mRNA
Description: Transcription of transcription unit glgAP. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: glgAP - PhoP-phosphate -> glgAP_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant glgAP gene
product glgAP_mRNA RNA
PhoP-phosphate glgBXCAP glgBXCAP_mRNA
Name: glgBXCAP -> glgBXCAP_mRNA
Description: Transcription of transcription unit glgBXCAP. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: glgBXCAP - PhoP-phosphate -> glgBXCAP_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant glgBXCAP gene
product glgBXCAP_mRNA RNA
PhoP-phosphate hdeAB-yhiD hdeAB-yhiD_mRNA
Name: hdeAB-yhiD -> hdeAB-yhiD_mRNA
Description: Transcription of transcription unit hdeAB-yhiD. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: hdeAB-yhiD - PhoP-phosphate -> hdeAB-yhiD_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant hdeAB-yhiD gene
product hdeAB-yhiD_mRNA RNA
PhoP-phosphate hdeD hdeD_mRNA
Name: hdeD -> hdeD_mRNA
Description: Transcription of transcription unit hdeD. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: hdeD - PhoP-phosphate -> hdeD_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant hdeD gene
product hdeD_mRNA RNA
PhoP-phosphate hemL hemL_mRNA
Name: hemL -> hemL_mRNA
Description: Transcription of transcription unit hemL. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: hemL - PhoP-phosphate -> hemL_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant hemL gene
product hemL_mRNA RNA
PhoP-phosphate iraM iraM_mRNA
Name: iraM -> iraM_mRNA
Description: Transcription of transcription unit iraM. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: iraM - PhoP-phosphate -> iraM_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant iraM gene
product iraM_mRNA RNA
PhoP-phosphate malS malS_mRNA
Name: malS -> malS_mRNA
Description: Transcription of transcription unit malS. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: malS - PhoP-phosphate -> malS_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant malS gene
product malS_mRNA RNA
PhoP-phosphate metBL metBL_mRNA
Name: metBL -> metBL_mRNA
Description: Transcription of transcription unit metBL. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: metBL - PhoP-phosphate -> metBL_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant metBL gene
product metBL_mRNA RNA
PhoP-phosphate mgrB mgrB_mRNA
Name: mgrB -> mgrB_mRNA
Description: Transcription of transcription unit mgrB. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: mgrB - PhoP-phosphate -> mgrB_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant mgrB gene
product mgrB_mRNA RNA
PhoP-phosphate mgrR mgrR_mRNA
Name: mgrR -> mgrR_mRNA
Description: Transcription of transcription unit mgrR. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: mgrR - PhoP-phosphate -> mgrR_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant mgrR gene
product mgrR_mRNA RNA
PhoP-phosphate mgtLA mgtLA_mRNA
Name: mgtLA -> mgtLA_mRNA
Description: Transcription of transcription unit mgtLA. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: mgtLA - PhoP-phosphate -> mgtLA_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant mgtLA gene
product mgtLA_mRNA RNA
PhoP-phosphate mgtS mgtS_mRNA
Name: mgtS -> mgtS_mRNA
Description: Transcription of transcription unit mgtS. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: mgtS - PhoP-phosphate -> mgtS_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant mgtS gene
product mgtS_mRNA RNA
PhoP-phosphate nagA nagA_mRNA
Name: nagA -> nagA_mRNA
Description: Transcription of transcription unit nagA. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: nagA - PhoP-phosphate -> nagA_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant nagA gene
product nagA_mRNA RNA
PhoP-phosphate ompT ompT_mRNA
Name: ompT -> ompT_mRNA
Description: Transcription of transcription unit ompT. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: ompT - PhoP-phosphate -> ompT_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant ompT gene
product ompT_mRNA RNA
PhoP-phosphate pagP pagP_mRNA
Name: pagP -> pagP_mRNA
Description: Transcription of transcription unit pagP. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: pagP - PhoP-phosphate -> pagP_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant pagP gene
product pagP_mRNA RNA
PhoP-phosphate PhoP-phosphate phoPQ phoPQ_mRNA
Name: phoPQ -> phoPQ_mRNA
Description: Transcription of transcription unit phoPQ. Reaction activation by PhoP-phosphate. Reaction inhibition by PhoP-phosphate.
Type: transcription
Pathway Components: phoPQ - PhoP-phosphate - PhoP-phosphate -> phoPQ_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
inhibitor PhoP-phosphate complex
reactant phoPQ gene
product phoPQ_mRNA RNA
PhoP-phosphate purHD purHD_mRNA
Name: purHD -> purHD_mRNA
Description: Transcription of transcription unit purHD. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: purHD - PhoP-phosphate -> purHD_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant purHD gene
product purHD_mRNA RNA
PhoP-phosphate rstAB rstAB_mRNA
Name: rstAB -> rstAB_mRNA
Description: Transcription of transcription unit rstAB. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: rstAB - PhoP-phosphate -> rstAB_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant rstAB gene
product rstAB_mRNA RNA
PhoP-phosphate rutABCDEFG rutABCDEFG_mRNA
Name: rutABCDEFG -> rutABCDEFG_mRNA
Description: Transcription of transcription unit rutABCDEFG. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: rutABCDEFG - PhoP-phosphate -> rutABCDEFG_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant rutABCDEFG gene
product rutABCDEFG_mRNA RNA
PhoP-phosphate PhoP-phosphate slyB slyB_mRNA
Name: slyB -> slyB_mRNA
Description: Transcription of transcription unit slyB. Reaction activation by PhoP-phosphate. Reaction inhibition by PhoP-phosphate.
Type: transcription
Pathway Components: slyB - PhoP-phosphate - PhoP-phosphate -> slyB_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
inhibitor PhoP-phosphate complex
reactant slyB gene
product slyB_mRNA RNA
PhoP-phosphate tolC-ygiABC tolC-ygiABC_mRNA
Name: tolC-ygiABC -> tolC-ygiABC_mRNA
Description: Transcription of transcription unit tolC-ygiABC. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: tolC-ygiABC - PhoP-phosphate -> tolC-ygiABC_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant tolC-ygiABC gene
product tolC-ygiABC_mRNA RNA
PhoP-phosphate ybjG ybjG_mRNA
Name: ybjG -> ybjG_mRNA
Description: Transcription of transcription unit ybjG. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: ybjG - PhoP-phosphate -> ybjG_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant ybjG gene
product ybjG_mRNA RNA
PhoP-phosphate yrbL yrbL_mRNA
Name: yrbL -> yrbL_mRNA
Description: Transcription of transcription unit yrbL. Reaction activation by PhoP-phosphate.
Type: transcription
Pathway Components: yrbL - PhoP-phosphate -> yrbL_mRNA
Components:
Function Name Type
activator PhoP-phosphate complex
reactant yrbL gene
product yrbL_mRNA RNA
PhoP-phosphate acrAB acrAB_mRNA
Name: acrAB -> acrAB_mRNA
Description: Transcription of transcription unit acrAB. Reaction inhibition by PhoP-phosphate.
Type: transcription
Pathway Components: acrAB - PhoP-phosphate -> acrAB_mRNA
Components:
Function Name Type
inhibitor PhoP-phosphate complex
reactant acrAB gene
product acrAB_mRNA RNA
PhoP-phosphate argD argD_mRNA
Name: argD -> argD_mRNA
Description: Transcription of transcription unit argD. Reaction inhibition by PhoP-phosphate.
Type: transcription
Pathway Components: argD - PhoP-phosphate -> argD_mRNA
Components:
Function Name Type
inhibitor PhoP-phosphate complex
reactant argD gene
product argD_mRNA RNA
PhoP-phosphate dcuD dcuD_mRNA
Name: dcuD -> dcuD_mRNA
Description: Transcription of transcription unit dcuD. Reaction inhibition by PhoP-phosphate.
Type: transcription
Pathway Components: dcuD - PhoP-phosphate -> dcuD_mRNA
Components:
Function Name Type
inhibitor PhoP-phosphate complex
reactant dcuD gene
product dcuD_mRNA RNA
PhoP-phosphate safA-ydeO safA-ydeO_mRNA
Name: safA-ydeO -> safA-ydeO_mRNA
Description: Transcription of transcription unit safA-ydeO. Reaction inhibition by PhoP-phosphate.
Type: transcription
Pathway Components: safA-ydeO - PhoP-phosphate -> safA-ydeO_mRNA
Components:
Function Name Type
inhibitor PhoP-phosphate complex
reactant safA-ydeO gene
product safA-ydeO_mRNA RNA
PhoP-phosphate treR treR_mRNA
Name: treR -> treR_mRNA
Description: Transcription of transcription unit treR. Reaction inhibition by PhoP-phosphate.
Type: transcription
Pathway Components: treR - PhoP-phosphate -> treR_mRNA
Components:
Function Name Type
inhibitor PhoP-phosphate complex
reactant treR gene
product treR_mRNA RNA
PhoP-phosphate ydeP ydeP_mRNA
Name: ydeP -> ydeP_mRNA
Description: Transcription of transcription unit ydeP. Reaction inhibition by PhoP-phosphate.
Type: transcription
Pathway Components: ydeP - PhoP-phosphate -> ydeP_mRNA
Components:
Function Name Type
inhibitor PhoP-phosphate complex
reactant ydeP gene
product ydeP_mRNA RNA
mgrB_mRNA MgrB
Name: mgrB_mRNA -> MgrB
Description: Translation of MgrB
Type: translation
Pathway Components: mgrB_mRNA -> MgrB
Components:
Function Name Type
product MgrB protein
reactant mgrB_mRNA RNA
dcuD_mRNA DcuD
Name: dcuD_mRNA -> DcuD
Description: Translation of DcuD
Type: translation
Pathway Components: dcuD_mRNA -> DcuD
Components:
Function Name Type
product DcuD protein
reactant dcuD_mRNA RNA
rutABCDEFG_mRNA RutA
Name: rutABCDEFG_mRNA -> RutA
Description: Translation of RutA
Type: translation
Pathway Components: rutABCDEFG_mRNA -> RutA
Components:
Function Name Type
product RutA protein
reactant rutABCDEFG_mRNA RNA
RutA Reduced FMN + oxygen + uracil flavin mononucleotide + ureidoperacrylic acid
Name: Reduced FMN + oxygen + uracil -> flavin mononucleotide + ureidoperacrylic acid
Description: Reaction transforming Reduced FMN, oxygen, uracil into flavin mononucleotide, ureidoperacrylic acid
Type: state transition
Pathway Components: Reduced FMN + oxygen + uracil - RutA -> flavin mononucleotide + ureidoperacrylic acid
Components:
Function Name Type
reactant Reduced FMN simple_molecule
catalyzer RutA protein
product flavin mononucleotide simple_molecule
reactant oxygen simple_molecule
reactant uracil simple_molecule
product ureidoperacrylic acid simple_molecule
RutA Reduced FMN + thymine + oxygen Products
Name: Reduced FMN + thymine + oxygen -> (Z)-2-methylureidoperacrylic acid + flavin mononucleotide
Description: Reaction transforming Reduced FMN, thymine, oxygen into (Z)-2-methylureidoperacrylic acid, flavin mononucleotide
Type: state transition
Pathway Components: Reduced FMN + thymine + oxygen - RutA -> (Z)-2-methylureidoperacrylic acid + flavin mononucleotide
Components:
Function Name Type
product (Z)-2-methylureidoperacrylic acid simple_molecule
reactant Reduced FMN simple_molecule
catalyzer RutA protein
product flavin mononucleotide simple_molecule
reactant oxygen simple_molecule
reactant thymine simple_molecule
rutABCDEFG_mRNA RutB
Name: rutABCDEFG_mRNA -> RutB
Description: Translation of RutB
Type: translation
Pathway Components: rutABCDEFG_mRNA -> RutB
Components:
Function Name Type
product RutB protein
reactant rutABCDEFG_mRNA RNA
RutB ureidoperacrylic acid peroxy aminoacrylate + carbamate
Name: ureidoperacrylic acid -> peroxy aminoacrylate + carbamate
Description: Reaction transforming ureidoperacrylic acid into peroxy aminoacrylate, carbamate
Type: state transition
Pathway Components: ureidoperacrylic acid - RutB -> peroxy aminoacrylate + carbamate
Components:
Function Name Type
catalyzer RutB protein
product carbamate simple_molecule
product peroxy aminoacrylate simple_molecule
reactant ureidoperacrylic acid simple_molecule
RutB 3-ureidoacrylate aminoacrylate + carbamate
Name: 3-ureidoacrylate -> aminoacrylate + carbamate
Description: Reaction transforming 3-ureidoacrylate into aminoacrylate, carbamate
Type: state transition
Pathway Components: 3-ureidoacrylate - RutB -> aminoacrylate + carbamate
Components:
Function Name Type
reactant 3-ureidoacrylate simple_molecule
catalyzer RutB protein
product aminoacrylate simple_molecule
product carbamate simple_molecule
RutB (Z)-2-methylureidoperacrylic acid (Z)-2-methyl-peroxyaminoacrylate + carbamate
Name: (Z)-2-methylureidoperacrylic acid -> (Z)-2-methyl-peroxyaminoacrylate + carbamate
Description: Reaction transforming (Z)-2-methylureidoperacrylic acid into (Z)-2-methyl-peroxyaminoacrylate, carbamate
Type: state transition
Pathway Components: (Z)-2-methylureidoperacrylic acid - RutB -> (Z)-2-methyl-peroxyaminoacrylate + carbamate
Components:
Function Name Type
product (Z)-2-methyl-peroxyaminoacrylate simple_molecule
reactant (Z)-2-methylureidoperacrylic acid simple_molecule
catalyzer RutB protein
product carbamate simple_molecule
rutABCDEFG_mRNA RutC
Name: rutABCDEFG_mRNA -> RutC
Description: Translation of RutC
Type: translation
Pathway Components: rutABCDEFG_mRNA -> RutC
Components:
Function Name Type
product RutC protein
reactant rutABCDEFG_mRNA RNA