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PgrR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
L-Ala-gamma-D-Glu-Dap L-Ala-D-Glu MpaA PgrR YcjY YmjC YmjD M-DAP ycjY ycjY-ymjDC-mpaA ycjY-ymjDC-mpaA_mRNA ycjY_mRNA


Gensor Unit       
Name: PgrR
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0051301 - cell division
GO:0009050 - glycopeptide catabolic process
GO:0009253 - peptidoglycan catabolic process
molecular_function GO:0004040 - amidase activity
GO:0061473 - murein tripeptide carboxypeptidase activity
GO:0008270 - zinc ion binding
Components: Show/Hide Components Table (12 more...)
Function Name Type
simple_molecule Ala-γ-D-Glu-Dap simple_molecule
simple_molecule Ala-D-Glu simple_molecule
simple_molecule M-DAP simple_molecule
protein MpaA protein
protein PgrR protein
protein YcjY protein
protein YmjC protein
protein YmjD protein
gene ycjY gene
gene ycjY-ymjDC-mpaA gene
RNA ycjY-ymjDC-mpaA_mRNA RNA
RNA ycjY_mRNA RNA


Reactions       
Showing 8 reactions
PgrR ycjY ycjY_mRNA
Name: ycjY -> ycjY_mRNA
Description: Transcription of transcription unit ycjY. Reaction inhibition by PgrR.
Type: transcription
Pathway Components: ycjY - PgrR -> ycjY_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor PgrR protein nd nd
reactant ycjY gene nd nd
product ycjY_mRNA RNA nd nd
PgrR ycjY-ymjDC-mpaA ycjY-ymjDC-mpaA_mRNA
Name: ycjY-ymjDC-mpaA -> ycjY-ymjDC-mpaA_mRNA
Description: Transcription of transcription unit ycjY-ymjDC-mpaA. Reaction inhibition by PgrR.
Type: transcription
Pathway Components: ycjY-ymjDC-mpaA - PgrR -> ycjY-ymjDC-mpaA_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor PgrR protein nd nd
reactant ycjY-ymjDC-mpaA gene nd nd
product ycjY-ymjDC-mpaA_mRNA RNA nd nd
ycjY-ymjDC-mpaA_mRNA YcjY
Name: ycjY-ymjDC-mpaA_mRNA -> YcjY
Description: Translation of YcjY
Type: translation
Pathway Components: ycjY-ymjDC-mpaA_mRNA -> YcjY
Components:
Function Name Type Evidence Reference(s)
product YcjY protein nd nd
reactant ycjY-ymjDC-mpaA_mRNA RNA nd nd
ycjY-ymjDC-mpaA_mRNA YmjD
Name: ycjY-ymjDC-mpaA_mRNA -> YmjD
Description: Translation of YmjD
Type: translation
Pathway Components: ycjY-ymjDC-mpaA_mRNA -> YmjD
Components:
Function Name Type Evidence Reference(s)
product YmjD protein nd nd
reactant ycjY-ymjDC-mpaA_mRNA RNA nd nd
ycjY-ymjDC-mpaA_mRNA YmjC
Name: ycjY-ymjDC-mpaA_mRNA -> YmjC
Description: Translation of YmjC
Type: translation
Pathway Components: ycjY-ymjDC-mpaA_mRNA -> YmjC
Components:
Function Name Type Evidence Reference(s)
product YmjC protein nd nd
reactant ycjY-ymjDC-mpaA_mRNA RNA nd nd
ycjY-ymjDC-mpaA_mRNA MpaA
Name: ycjY-ymjDC-mpaA_mRNA -> MpaA
Description: Translation of MpaA
Type: translation
Pathway Components: ycjY-ymjDC-mpaA_mRNA -> MpaA
Components:
Function Name Type Evidence Reference(s)
product MpaA protein nd nd
reactant ycjY-ymjDC-mpaA_mRNA RNA nd nd
MpaA Ala-γ-D-Glu-Dap Ala-D-Glu + M-DAP
Name: Ala-γ-D-Glu-Dap -> Ala-D-Glu + M-DAP
Description: Reaction transforming Ala-γ-D-Glu-Dap into Ala-D-Glu, M-DAP
Type: state transition
Pathway Components: Ala-γ-D-Glu-Dap - MpaA -> Ala-D-Glu + M-DAP
Components:
Function Name Type Evidence Reference(s)
reactant Ala-γ-D-Glu-Dap simple_molecule nd nd
product Ala-D-Glu simple_molecule nd nd
product M-DAP simple_molecule nd nd
catalyzer MpaA protein nd nd
ycjY_mRNA YcjY
Name: ycjY_mRNA -> YcjY
Description: Translation of YcjY
Type: translation
Pathway Components: ycjY_mRNA -> YcjY
Components:
Function Name Type Evidence Reference(s)
product YcjY protein nd nd
reactant ycjY_mRNA RNA nd nd



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