RegulonDB RegulonDB

PgrR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          


Gensor Unit       
Name: PgrR
Classification:
Groups: Signal transduction mechanisms
Cell wall/membrane/envelope biogenesis
Gene Ontology Terms (GO): biological_process GO:0019439 - aromatic compound catabolic process
GO:0051301 - cell division
GO:0071555 - cell wall organization
GO:0009063 - cellular amino acid catabolic process
GO:0009050 - glycopeptide catabolic process
GO:0045892 - negative regulation of transcription, DNA-templated
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cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0016020 - membrane
GO:0005886 - plasma membrane
molecular_function GO:0005524 - ATP binding
GO:0003677 - DNA binding
GO:0004040 - amidase activity
GO:0016853 - isomerase activity
GO:0046872 - metal ion binding
GO:0004181 - metallocarboxypeptidase activity
GO:0061473 - murein tripeptide carboxypeptidase activity
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Components:
  Function Name Type
  simple_molecule Ala-γ-D-Glu-Dap simple_molecule
  simple_molecule Ala-D-Glu simple_molecule
  simple_molecule M-DAP simple_molecule
  protein MpaA protein
  protein PgrR protein
  protein TyrR protein
  protein YcjF protein
  protein YcjG protein
  protein YcjX protein
  protein YcjY protein
  protein YmjC protein
  protein YmjD protein
  simple_molecule ala-glu simple_molecule
  gene tyrR gene
  RNA tyrR_mRNA RNA
  gene ycjG gene
  RNA ycjG_mRNA RNA
  gene ycjXF-tyrR gene
  RNA ycjXF-tyrR_mRNA RNA
  gene ycjY gene
  gene ycjY-ymjDC-mpaA gene
  RNA ycjY-ymjDC-mpaA_mRNA RNA
  RNA ycjY_mRNA RNA


Reactions       
Showing 17 reactions
PgrR tyrR tyrR_mRNA
Name: tyrR -> tyrR_mRNA
Description: Transcription of transcription unit tyrR. Reaction inhibition by PgrR.
Type: transcription
Pathway Components: tyrR - PgrR -> tyrR_mRNA
Components:
Function Name Type
inhibitor PgrR protein
reactant tyrR gene
product tyrR_mRNA RNA
PgrR ycjG ycjG_mRNA
Name: ycjG -> ycjG_mRNA
Description: Transcription of transcription unit ycjG. Reaction inhibition by PgrR.
Type: transcription
Pathway Components: ycjG - PgrR -> ycjG_mRNA
Components:
Function Name Type
inhibitor PgrR protein
reactant ycjG gene
product ycjG_mRNA RNA
PgrR ycjXF-tyrR ycjXF-tyrR_mRNA
Name: ycjXF-tyrR -> ycjXF-tyrR_mRNA
Description: Transcription of transcription unit ycjXF-tyrR. Reaction inhibition by PgrR.
Type: transcription
Pathway Components: ycjXF-tyrR - PgrR -> ycjXF-tyrR_mRNA
Components:
Function Name Type
inhibitor PgrR protein
reactant ycjXF-tyrR gene
product ycjXF-tyrR_mRNA RNA
PgrR ycjY ycjY_mRNA
Name: ycjY -> ycjY_mRNA
Description: Transcription of transcription unit ycjY. Reaction inhibition by PgrR.
Type: transcription
Pathway Components: ycjY - PgrR -> ycjY_mRNA
Components:
Function Name Type
inhibitor PgrR protein
reactant ycjY gene
product ycjY_mRNA RNA
PgrR ycjY-ymjDC-mpaA ycjY-ymjDC-mpaA_mRNA
Name: ycjY-ymjDC-mpaA -> ycjY-ymjDC-mpaA_mRNA
Description: Transcription of transcription unit ycjY-ymjDC-mpaA. Reaction inhibition by PgrR.
Type: transcription
Pathway Components: ycjY-ymjDC-mpaA - PgrR -> ycjY-ymjDC-mpaA_mRNA
Components:
Function Name Type
inhibitor PgrR protein
reactant ycjY-ymjDC-mpaA gene
product ycjY-ymjDC-mpaA_mRNA RNA
ycjY-ymjDC-mpaA_mRNA YcjY
Name: ycjY-ymjDC-mpaA_mRNA -> YcjY
Description: Translation of YcjY
Type: translation
Pathway Components: ycjY-ymjDC-mpaA_mRNA -> YcjY
Components:
Function Name Type
product YcjY protein
reactant ycjY-ymjDC-mpaA_mRNA RNA
ycjY-ymjDC-mpaA_mRNA YmjD
Name: ycjY-ymjDC-mpaA_mRNA -> YmjD
Description: Translation of YmjD
Type: translation
Pathway Components: ycjY-ymjDC-mpaA_mRNA -> YmjD
Components:
Function Name Type
product YmjD protein
reactant ycjY-ymjDC-mpaA_mRNA RNA
ycjY-ymjDC-mpaA_mRNA YmjC
Name: ycjY-ymjDC-mpaA_mRNA -> YmjC
Description: Translation of YmjC
Type: translation
Pathway Components: ycjY-ymjDC-mpaA_mRNA -> YmjC
Components:
Function Name Type
product YmjC protein
reactant ycjY-ymjDC-mpaA_mRNA RNA
ycjY-ymjDC-mpaA_mRNA MpaA
Name: ycjY-ymjDC-mpaA_mRNA -> MpaA
Description: Translation of MpaA
Type: translation
Pathway Components: ycjY-ymjDC-mpaA_mRNA -> MpaA
Components:
Function Name Type
product MpaA protein
reactant ycjY-ymjDC-mpaA_mRNA RNA
MpaA Ala-γ-D-Glu-Dap Ala-D-Glu + M-DAP
Name: Ala-γ-D-Glu-Dap -> Ala-D-Glu + M-DAP
Description: Reaction transforming Ala-γ-D-Glu-Dap into Ala-D-Glu, M-DAP
Type: state transition
Pathway Components: Ala-γ-D-Glu-Dap - MpaA -> Ala-D-Glu + M-DAP
Components:
Function Name Type
reactant Ala-γ-D-Glu-Dap simple_molecule
product Ala-D-Glu simple_molecule
product M-DAP simple_molecule
catalyzer MpaA protein
ycjY_mRNA YcjY
Name: ycjY_mRNA -> YcjY
Description: Translation of YcjY
Type: translation
Pathway Components: ycjY_mRNA -> YcjY
Components:
Function Name Type
product YcjY protein
reactant ycjY_mRNA RNA
ycjG_mRNA YcjG
Name: ycjG_mRNA -> YcjG
Description: Translation of YcjG
Type: translation
Pathway Components: ycjG_mRNA -> YcjG
Components:
Function Name Type
product YcjG protein
reactant ycjG_mRNA RNA
YcjG Ala-D-Glu ala-glu
Name: Ala-D-Glu -> ala-glu
Description: Reaction transforming Ala-D-Glu into ala-glu
Type: state transition
Pathway Components: Ala-D-Glu - YcjG -> ala-glu
Components:
Function Name Type
reactant Ala-D-Glu simple_molecule
catalyzer YcjG protein
product ala-glu simple_molecule
ycjXF-tyrR_mRNA YcjX
Name: ycjXF-tyrR_mRNA -> YcjX
Description: Translation of YcjX
Type: translation
Pathway Components: ycjXF-tyrR_mRNA -> YcjX
Components:
Function Name Type
product YcjX protein
reactant ycjXF-tyrR_mRNA RNA
ycjXF-tyrR_mRNA YcjF
Name: ycjXF-tyrR_mRNA -> YcjF
Description: Translation of YcjF
Type: translation
Pathway Components: ycjXF-tyrR_mRNA -> YcjF
Components:
Function Name Type
product YcjF protein
reactant ycjXF-tyrR_mRNA RNA
ycjXF-tyrR_mRNA TyrR
Name: ycjXF-tyrR_mRNA -> TyrR
Description: Translation of TyrR
Type: translation
Pathway Components: ycjXF-tyrR_mRNA -> TyrR
Components:
Function Name Type
product TyrR protein
reactant ycjXF-tyrR_mRNA RNA
tyrR_mRNA TyrR
Name: tyrR_mRNA -> TyrR
Description: Translation of TyrR
Type: translation
Pathway Components: tyrR_mRNA -> TyrR
Components:
Function Name Type
product TyrR protein
reactant tyrR_mRNA RNA



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