RegulonDB RegulonDB

OxyR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
KDG 3-sulfinoalanine AhpC AhpF fructuronate fructuronate_Ext D-gluconate D-gluconate_Ext mannonate Dps DsbG Fe+2 Fe+2_Ext FhuF Flu Fur GntP Gor GrxA Hcp Hcr HemH KatG L-alanine L-cysteine L-glutamate Mn(II) Mn(II)_Ext MntH NfsA OxyR This Gensor Unit is not yet available RimK S-sulfanyl-[acceptor] SufA SufB SufC SufD SufE SufS TrxC Uof UxuA UxuB YbjC YbjN YchF YhjA a [protein] alpha-L-glu-alpha-L-glu a [protein] alpha-L-glutamate a protein with correct disulfide bonds a protein with incorrect disulfide bonds protein with oxidized disulfide bonds protein with reduced SH groups a reduced electron acceptor a reduced nitroaromatic compound a sulfur acceptor ahpCF ahpCF_mRNA ammonia an L-cysteine desulfurase an [L-cysteine desulfurase]-S-sulfanyl-L-cysteine ROH ROOH an oxidized electron acceptor an oxidized nitroaromatic compound dps dps_mRNA dsbG dsbG_mRNA fhuF fhuF_mRNA flu flu_mRNA GSH GSSG gntP gntP_mRNA gor gor_mRNA grxA grxA_mRNA hcp-hcr hcp-hcr_mRNA hemH hemH_mRNA perhydrol NH2OH katG katG_mRNA mntH mntH_mRNA oxyR oxyR_mRNA oxyS oxyS_mRNA oxygen phosphate protoheme IX protoporphyrin selenide selenocysteine sufABCDSE sufABCDSE_mRNA sulfite trxC trxC_mRNA uof-fur uof-fur_mRNA uxuAB uxuAB_mRNA ybjC-nfsA-rimK-ybjN ybjC-nfsA-rimK-ybjN_mRNA ychF ychF_mRNA yhjA yhjA_mRNA |Ox-Hybrid-Cluster-Proteins| |Red-Hybrid-Cluster-Proteins| AhpC AhpF L-cysteine


Gensor Unit       
Name: OxyR
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0018410 - C-terminal protein amino acid modification
GO:0042840 - D-glucuronate catabolic process
GO:0009432 - SOS response
GO:0070574 - cadmium ion transmembrane transport
GO:0015691 - cadmium ion transport
GO:0045454 - cell redox homeostasis
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cellular_component GO:0009321 - alkyl hydroperoxide reductase complex
GO:0005623 - cell
GO:0009279 - cell outer membrane
GO:0009986 - cell surface
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0005576 - extracellular region
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molecular_function GO:0051537 - 2 iron, 2 sulfur cluster binding
GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0016887 - ATPase activity
GO:0003677 - DNA binding
GO:0003700 - DNA binding transcription factor activity
GO:0071949 - FAD binding
GO:0010181 - FMN binding
Read more >
Components: Show/Hide Components Table (122 more...)
Function Name Type
simple_molecule 2-keto-3-deoxygluconate simple_molecule
simple_molecule 3-sulfinoalanine simple_molecule
simple_molecule A(H2) simple_molecule
protein AhpC protein
complex AhpC-AhpF complex
protein AhpF protein
protein Dps protein
protein DsbG protein
simple_molecule Fe+2 simple_molecule
simple_molecule Fe+2_Ext simple_molecule
protein FhuF protein
protein Flu protein
protein Fur protein
simple_molecule GSSG simple_molecule
protein GntP protein
protein Gor protein
protein GrxA protein
protein Hcp protein
protein Hcr protein
protein HemH protein
protein KatG protein
simple_molecule L-glutamate simple_molecule
simple_molecule Mn(II) simple_molecule
simple_molecule Mn(II)_Ext simple_molecule
protein MntH protein
simple_molecule NH2OH simple_molecule
protein NfsA protein
protein OxyR protein
protein RNA:IS102 protein
protein RNA:OxyS protein
simple_molecule ROOH simple_molecule
protein RimK protein
protein SufA protein
protein SufB protein
complex SufB-SufC-SufD complex
protein SufC protein
protein SufD protein
protein SufE protein
protein SufS protein
protein TrxC protein
protein Uof protein
protein UxuA protein
protein UxuB protein
protein YbjC protein
protein YbjN protein
protein YchF protein
protein YhjA protein
simple_molecule [L-cysteine desulfurase] L-cysteine persulfide simple_molecule
simple_molecule [protein] α-L-glu-α-L-glu simple_molecule
simple_molecule [protein] C-terminal L-glutamate simple_molecule
simple_molecule acceptors simple_molecule
gene ahpCF gene
RNA ahpCF_mRNA RNA
simple_molecule alanine simple_molecule
simple_molecule alcohol simple_molecule
simple_molecule ammonium simple_molecule
simple_molecule cysteine simple_molecule
gene dps gene
RNA dps_mRNA RNA
gene dsbG gene
RNA dsbG_mRNA RNA
gene fhuF gene
RNA fhuF_mRNA RNA
simple_molecule fructuronate simple_molecule
simple_molecule fructuronate_Ext simple_molecule
simple_molecule gluconate simple_molecule
simple_molecule gluconate_Ext simple_molecule
simple_molecule glutathione simple_molecule
gene gntP gene
RNA gntP_mRNA RNA
gene gor gene
RNA gor_mRNA RNA
gene grxA gene
RNA grxA_mRNA RNA
gene hcp-hcr gene
RNA hcp-hcr_mRNA RNA
gene hemH gene
RNA hemH_mRNA RNA
gene isrC-flu gene
RNA isrC-flu_mRNA RNA
gene katG gene
RNA katG_mRNA RNA
simple_molecule mannonate simple_molecule
gene mntH gene
RNA mntH_mRNA RNA
simple_molecule oxidized hybrid-cluster protein simple_molecule
simple_molecule oxidized nitroaromatic compound simple_molecule
gene oxyR gene
RNA oxyR_mRNA RNA
gene oxyS gene
RNA oxyS_mRNA RNA
simple_molecule oxygen simple_molecule
simple_molecule perhydrol simple_molecule
simple_molecule phosphate simple_molecule
simple_molecule protein cysteines simple_molecule
simple_molecule protein with correct disulfide bonds simple_molecule
simple_molecule protein with incorrect disulfide bonds simple_molecule
simple_molecule protein with oxidized disulfide bonds simple_molecule
simple_molecule protein with reduced SH groups simple_molecule
simple_molecule protoheme IX simple_molecule
simple_molecule protoporphyrin simple_molecule
simple_molecule reduced hybrid-cluster protein simple_molecule
simple_molecule reduced nitroaromatic compound simple_molecule
simple_molecule selenide simple_molecule
simple_molecule selenocysteine simple_molecule
gene sufABCDSE gene
RNA sufABCDSE_mRNA RNA
simple_molecule sulfite simple_molecule
simple_molecule sulfurated sulfur donor simple_molecule
gene trxC gene
RNA trxC_mRNA RNA
simple_molecule unsulfurated [sulfur donor] simple_molecule
gene uof-fur gene
RNA uof-fur_mRNA RNA
gene uxuAB gene
RNA uxuAB_mRNA RNA
gene ybjC-nfsA-rimK-ybjN gene
RNA ybjC-nfsA-rimK-ybjN_mRNA RNA
gene ychF gene
RNA ychF_mRNA RNA
gene yhjA gene
RNA yhjA_mRNA RNA


Reactions       
Showing 79 reactions
OxyR ahpCF ahpCF_mRNA
Name: ahpCF -> ahpCF_mRNA
Description: Transcription of transcription unit ahpCF. Reaction activation by OxyR.
Type: transcription
Pathway Components: ahpCF - OxyR -> ahpCF_mRNA
Components:
Function Name Type Evidence Reference(s)
activator OxyR protein nd nd
reactant ahpCF gene nd nd
product ahpCF_mRNA RNA nd nd
OxyR dps dps_mRNA
Name: dps -> dps_mRNA
Description: Transcription of transcription unit dps. Reaction activation by OxyR.
Type: transcription
Pathway Components: dps - OxyR -> dps_mRNA
Components:
Function Name Type Evidence Reference(s)
activator OxyR protein nd nd
reactant dps gene nd nd
product dps_mRNA RNA nd nd
OxyR dsbG dsbG_mRNA
Name: dsbG -> dsbG_mRNA
Description: Transcription of transcription unit dsbG. Reaction activation by OxyR.
Type: transcription
Pathway Components: dsbG - OxyR -> dsbG_mRNA
Components:
Function Name Type Evidence Reference(s)
activator OxyR protein nd nd
reactant dsbG gene nd nd
product dsbG_mRNA RNA nd nd
OxyR fhuF fhuF_mRNA
Name: fhuF -> fhuF_mRNA
Description: Transcription of transcription unit fhuF. Reaction inhibition by OxyR.
Type: transcription
Pathway Components: fhuF - OxyR -> fhuF_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor OxyR protein nd nd
reactant fhuF gene nd nd
product fhuF_mRNA RNA nd nd
OxyR gntP gntP_mRNA
Name: gntP -> gntP_mRNA
Description: Transcription of transcription unit gntP. Reaction inhibition by OxyR.
Type: transcription
Pathway Components: gntP - OxyR -> gntP_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor OxyR protein nd nd
reactant gntP gene nd nd
product gntP_mRNA RNA nd nd
OxyR gor gor_mRNA
Name: gor -> gor_mRNA
Description: Transcription of transcription unit gor. Reaction activation by OxyR.
Type: transcription
Pathway Components: gor - OxyR -> gor_mRNA
Components:
Function Name Type Evidence Reference(s)
activator OxyR protein nd nd
reactant gor gene nd nd
product gor_mRNA RNA nd nd
OxyR grxA grxA_mRNA
Name: grxA -> grxA_mRNA
Description: Transcription of transcription unit grxA. Reaction activation by OxyR.
Type: transcription
Pathway Components: grxA - OxyR -> grxA_mRNA
Components:
Function Name Type Evidence Reference(s)
activator OxyR protein nd nd
reactant grxA gene nd nd
product grxA_mRNA RNA nd nd
OxyR hcp-hcr hcp-hcr_mRNA
Name: hcp-hcr -> hcp-hcr_mRNA
Description: Transcription of transcription unit hcp-hcr. Reaction activation by OxyR.
Type: transcription
Pathway Components: hcp-hcr - OxyR -> hcp-hcr_mRNA
Components:
Function Name Type Evidence Reference(s)
activator OxyR protein nd nd
reactant hcp-hcr gene nd nd
product hcp-hcr_mRNA RNA nd nd
OxyR hemH hemH_mRNA
Name: hemH -> hemH_mRNA
Description: Transcription of transcription unit hemH. Reaction activation by OxyR.
Type: transcription
Pathway Components: hemH - OxyR -> hemH_mRNA
Components:
Function Name Type Evidence Reference(s)
activator OxyR protein nd nd
reactant hemH gene nd nd
product hemH_mRNA RNA nd nd
OxyR isrC-flu isrC-flu_mRNA
Name: isrC-flu -> isrC-flu_mRNA
Description: Transcription of transcription unit isrC-flu. Reaction inhibition by OxyR.
Type: transcription
Pathway Components: isrC-flu - OxyR -> isrC-flu_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor OxyR protein nd nd
reactant isrC-flu gene nd nd
product isrC-flu_mRNA RNA nd nd
OxyR katG katG_mRNA
Name: katG -> katG_mRNA
Description: Transcription of transcription unit katG. Reaction activation by OxyR.
Type: transcription
Pathway Components: katG - OxyR -> katG_mRNA
Components:
Function Name Type Evidence Reference(s)
activator OxyR protein nd nd
reactant katG gene nd nd
product katG_mRNA RNA nd nd
OxyR mntH mntH_mRNA
Name: mntH -> mntH_mRNA
Description: Transcription of transcription unit mntH. Reaction activation by OxyR.
Type: transcription
Pathway Components: mntH - OxyR -> mntH_mRNA
Components:
Function Name Type Evidence Reference(s)
activator OxyR protein nd nd
reactant mntH gene nd nd
product mntH_mRNA RNA nd nd
OxyR oxyR oxyR_mRNA
Name: oxyR -> oxyR_mRNA
Description: Transcription of transcription unit oxyR. Reaction inhibition by OxyR.
Type: transcription
Pathway Components: oxyR - OxyR -> oxyR_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor OxyR protein nd nd
reactant oxyR gene nd nd
product oxyR_mRNA RNA nd nd
OxyR oxyS oxyS_mRNA
Name: oxyS -> oxyS_mRNA
Description: Transcription of transcription unit oxyS. Reaction activation by OxyR.
Type: transcription
Pathway Components: oxyS - OxyR -> oxyS_mRNA
Components:
Function Name Type Evidence Reference(s)
activator OxyR protein nd nd
reactant oxyS gene nd nd
product oxyS_mRNA RNA nd nd
OxyR sufABCDSE sufABCDSE_mRNA
Name: sufABCDSE -> sufABCDSE_mRNA
Description: Transcription of transcription unit sufABCDSE. Reaction activation by OxyR.
Type: transcription
Pathway Components: sufABCDSE - OxyR -> sufABCDSE_mRNA
Components:
Function Name Type Evidence Reference(s)
activator OxyR protein nd nd
reactant sufABCDSE gene nd nd
product sufABCDSE_mRNA RNA nd nd
OxyR trxC trxC_mRNA
Name: trxC -> trxC_mRNA
Description: Transcription of transcription unit trxC. Reaction activation by OxyR.
Type: transcription
Pathway Components: trxC - OxyR -> trxC_mRNA
Components:
Function Name Type Evidence Reference(s)
activator OxyR protein nd nd
reactant trxC gene nd nd
product trxC_mRNA RNA nd nd
OxyR uof-fur uof-fur_mRNA
Name: uof-fur -> uof-fur_mRNA
Description: Transcription of transcription unit uof-fur. Reaction activation by OxyR.
Type: transcription
Pathway Components: uof-fur - OxyR -> uof-fur_mRNA
Components:
Function Name Type Evidence Reference(s)
activator OxyR protein nd nd
reactant uof-fur gene nd nd
product uof-fur_mRNA RNA nd nd
OxyR uxuAB uxuAB_mRNA
Name: uxuAB -> uxuAB_mRNA
Description: Transcription of transcription unit uxuAB. Reaction inhibition by OxyR.
Type: transcription
Pathway Components: uxuAB - OxyR -> uxuAB_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor OxyR protein nd nd
reactant uxuAB gene nd nd
product uxuAB_mRNA RNA nd nd
OxyR ybjC-nfsA-rimK-ybjN ybjC-nfsA-rimK-ybjN_mRNA
Name: ybjC-nfsA-rimK-ybjN -> ybjC-nfsA-rimK-ybjN_mRNA
Description: Transcription of transcription unit ybjC-nfsA-rimK-ybjN. Reaction inhibition by OxyR.
Type: transcription
Pathway Components: ybjC-nfsA-rimK-ybjN - OxyR -> ybjC-nfsA-rimK-ybjN_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor OxyR protein nd nd
reactant ybjC-nfsA-rimK-ybjN gene nd nd
product ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
OxyR ychF ychF_mRNA
Name: ychF -> ychF_mRNA
Description: Transcription of transcription unit ychF. Reaction inhibition by OxyR.
Type: transcription
Pathway Components: ychF - OxyR -> ychF_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor OxyR protein nd nd
reactant ychF gene nd nd
product ychF_mRNA RNA nd nd
OxyR yhjA yhjA_mRNA
Name: yhjA -> yhjA_mRNA
Description: Transcription of transcription unit yhjA. Reaction activation by OxyR.
Type: transcription
Pathway Components: yhjA - OxyR -> yhjA_mRNA
Components:
Function Name Type Evidence Reference(s)
activator OxyR protein nd nd
reactant yhjA gene nd nd
product yhjA_mRNA RNA nd nd
ahpCF_mRNA AhpC
Name: ahpCF_mRNA -> AhpC
Description: Translation of AhpC
Type: translation
Pathway Components: ahpCF_mRNA -> AhpC
Components:
Function Name Type Evidence Reference(s)
product AhpC protein nd nd
reactant ahpCF_mRNA RNA nd nd
AhpF + AhpC AhpC-AhpF
Name: AhpF + AhpC -> AhpC-AhpF
Description: Reaction transforming AhpF, AhpC into AhpC-AhpF
Type: state transition
Pathway Components: AhpF + AhpC -> AhpC-AhpF
Components:
Function Name Type Evidence Reference(s)
reactant AhpC protein nd nd
product AhpC-AhpF complex nd nd
reactant AhpF protein nd nd
AhpC-AhpF ROOH alcohol
Name: ROOH -> alcohol
Description: Reaction transforming ROOH into alcohol
Type: state transition
Pathway Components: ROOH - AhpC-AhpF -> alcohol
Components:
Function Name Type Evidence Reference(s)
catalyzer AhpC-AhpF complex nd nd
reactant ROOH simple_molecule nd nd
product alcohol simple_molecule nd nd
ahpCF_mRNA AhpF
Name: ahpCF_mRNA -> AhpF
Description: Translation of AhpF
Type: translation
Pathway Components: ahpCF_mRNA -> AhpF
Components:
Function Name Type Evidence Reference(s)
product AhpF protein nd nd
reactant ahpCF_mRNA RNA nd nd
gor_mRNA Gor
Name: gor_mRNA -> Gor
Description: Translation of Gor
Type: translation
Pathway Components: gor_mRNA -> Gor
Components:
Function Name Type Evidence Reference(s)
product Gor protein nd nd
reactant gor_mRNA RNA nd nd
GSSG Gor GSSG glutathione
Name: GSSG -> glutathione
Description: Reaction transforming GSSG into glutathione
Type: state transition
Pathway Components: GSSG - Gor - GSSG -> glutathione
Components:
Function Name Type Evidence Reference(s)
inhibitor GSSG simple_molecule nd nd
reactant GSSG simple_molecule nd nd
catalyzer Gor protein nd nd
product glutathione simple_molecule nd nd
isrC-flu_mRNA RNA:IS102
Name: isrC-flu_mRNA -> RNA:IS102
Description: Translation of RNA:IS102
Type: translation
Pathway Components: isrC-flu_mRNA -> RNA:IS102
Components:
Function Name Type Evidence Reference(s)
product RNA:IS102 protein nd nd
reactant isrC-flu_mRNA RNA nd nd
isrC-flu_mRNA Flu
Name: isrC-flu_mRNA -> Flu
Description: Translation of Flu
Type: translation
Pathway Components: isrC-flu_mRNA -> Flu
Components:
Function Name Type Evidence Reference(s)
product Flu protein nd nd
reactant isrC-flu_mRNA RNA nd nd
gntP_mRNA GntP
Name: gntP_mRNA -> GntP
Description: Translation of GntP
Type: translation
Pathway Components: gntP_mRNA -> GntP
Components:
Function Name Type Evidence Reference(s)
product GntP protein nd nd
reactant gntP_mRNA RNA nd nd
GntP fructuronate_Ext fructuronate
Name: fructuronate_Ext -> fructuronate
Description: Transport of fructuronate_Ext through a bacterial membrane, leading to the presence of fructuronate inside the cell.
Type: transport
Pathway Components: fructuronate_Ext - GntP -> fructuronate
Components:
Function Name Type Evidence Reference(s)
catalyzer GntP protein nd nd
product fructuronate simple_molecule nd nd
reactant fructuronate_Ext simple_molecule nd nd
GntP gluconate_Ext gluconate
Name: gluconate_Ext -> gluconate
Description: Transport of gluconate_Ext through a bacterial membrane, leading to the presence of gluconate inside the cell.
Type: transport
Pathway Components: gluconate_Ext - GntP -> gluconate
Components:
Function Name Type Evidence Reference(s)
catalyzer GntP protein nd nd
product gluconate simple_molecule nd nd
reactant gluconate_Ext simple_molecule nd nd
sufABCDSE_mRNA SufA
Name: sufABCDSE_mRNA -> SufA
Description: Translation of SufA
Type: translation
Pathway Components: sufABCDSE_mRNA -> SufA
Components:
Function Name Type Evidence Reference(s)
product SufA protein nd nd
reactant sufABCDSE_mRNA RNA nd nd
sufABCDSE_mRNA SufB
Name: sufABCDSE_mRNA -> SufB
Description: Translation of SufB
Type: translation
Pathway Components: sufABCDSE_mRNA -> SufB
Components:
Function Name Type Evidence Reference(s)
product SufB protein nd nd
reactant sufABCDSE_mRNA RNA nd nd
SufD + SufB + SufC SufB-SufC-SufD
Name: SufD + SufB + SufC -> SufB-SufC-SufD
Description: Reaction transforming SufD, SufB, SufC into SufB-SufC-SufD
Type: state transition
Pathway Components: SufD + SufB + SufC -> SufB-SufC-SufD
Components:
Function Name Type Evidence Reference(s)
reactant SufB protein nd nd
product SufB-SufC-SufD complex nd nd
reactant SufC protein nd nd
reactant SufD protein nd nd
sufABCDSE_mRNA SufC
Name: sufABCDSE_mRNA -> SufC
Description: Translation of SufC
Type: translation
Pathway Components: sufABCDSE_mRNA -> SufC
Components:
Function Name Type Evidence Reference(s)
product SufC protein nd nd
reactant sufABCDSE_mRNA RNA nd nd
sufABCDSE_mRNA SufD
Name: sufABCDSE_mRNA -> SufD
Description: Translation of SufD
Type: translation
Pathway Components: sufABCDSE_mRNA -> SufD
Components:
Function Name Type Evidence Reference(s)
product SufD protein nd nd
reactant sufABCDSE_mRNA RNA nd nd
sufABCDSE_mRNA SufS
Name: sufABCDSE_mRNA -> SufS
Description: Translation of SufS
Type: translation
Pathway Components: sufABCDSE_mRNA -> SufS
Components:
Function Name Type Evidence Reference(s)
product SufS protein nd nd
reactant sufABCDSE_mRNA RNA nd nd
SufS unsulfurated [sulfur donor] + cysteine sulfurated sulfur donor + alanine
Name: unsulfurated [sulfur donor] + cysteine -> sulfurated sulfur donor + alanine
Description: Reaction transforming unsulfurated [sulfur donor], cysteine into sulfurated sulfur donor, alanine
Type: state transition
Pathway Components: unsulfurated [sulfur donor] + cysteine - SufS -> sulfurated sulfur donor + alanine
Components:
Function Name Type Evidence Reference(s)
catalyzer SufS protein nd nd
product alanine simple_molecule nd nd
reactant cysteine simple_molecule nd nd
product sulfurated sulfur donor simple_molecule nd nd
reactant unsulfurated [sulfur donor] simple_molecule nd nd
SufS protein cysteines + cysteine Products
Name: protein cysteines + cysteine -> [L-cysteine desulfurase] L-cysteine persulfide + alanine
Description: Reaction transforming protein cysteines, cysteine into [L-cysteine desulfurase] L-cysteine persulfide, alanine
Type: state transition
Pathway Components: protein cysteines + cysteine - SufS -> [L-cysteine desulfurase] L-cysteine persulfide + alanine
Components:
Function Name Type Evidence Reference(s)
catalyzer SufS protein nd nd
product [L-cysteine desulfurase] L-cysteine persulfide simple_molecule nd nd
product alanine simple_molecule nd nd
reactant cysteine simple_molecule nd nd
reactant protein cysteines simple_molecule nd nd
SufS Reactants sulfurated sulfur donor + protein cysteines
Name: [L-cysteine desulfurase] L-cysteine persulfide + unsulfurated [sulfur donor] -> sulfurated sulfur donor + protein cysteines
Description: Reaction transforming [L-cysteine desulfurase] L-cysteine persulfide, unsulfurated [sulfur donor] into sulfurated sulfur donor, protein cysteines
Type: state transition
Pathway Components: [L-cysteine desulfurase] L-cysteine persulfide + unsulfurated [sulfur donor] - SufS -> sulfurated sulfur donor + protein cysteines
Components:
Function Name Type Evidence Reference(s)
catalyzer SufS protein nd nd
reactant [L-cysteine desulfurase] L-cysteine persulfide simple_molecule nd nd
product protein cysteines simple_molecule nd nd
product sulfurated sulfur donor simple_molecule nd nd
reactant unsulfurated [sulfur donor] simple_molecule nd nd
SufS 3-sulfinoalanine alanine + sulfite
Name: 3-sulfinoalanine -> alanine + sulfite
Description: Reaction transforming 3-sulfinoalanine into alanine, sulfite
Type: state transition
Pathway Components: 3-sulfinoalanine - SufS -> alanine + sulfite
Components:
Function Name Type Evidence Reference(s)
reactant 3-sulfinoalanine simple_molecule nd nd
catalyzer SufS protein nd nd
product alanine simple_molecule nd nd
product sulfite simple_molecule nd nd
SufS selenocysteine + A(H2) acceptors + selenide + alanine
Name: selenocysteine + A(H2) -> acceptors + selenide + alanine
Description: Reaction transforming selenocysteine, A(H2) into acceptors, selenide , alanine
Type: state transition
Pathway Components: selenocysteine + A(H2) - SufS -> acceptors + selenide + alanine
Components:
Function Name Type Evidence Reference(s)
reactant A(H2) simple_molecule nd nd
catalyzer SufS protein nd nd
product acceptors simple_molecule nd nd
product alanine simple_molecule nd nd
product selenide simple_molecule nd nd
reactant selenocysteine simple_molecule nd nd
sufABCDSE_mRNA SufE
Name: sufABCDSE_mRNA -> SufE
Description: Translation of SufE
Type: translation
Pathway Components: sufABCDSE_mRNA -> SufE
Components:
Function Name Type Evidence Reference(s)
product SufE protein nd nd
reactant sufABCDSE_mRNA RNA nd nd
dps_mRNA Dps
Name: dps_mRNA -> Dps
Description: Translation of Dps
Type: translation
Pathway Components: dps_mRNA -> Dps
Components:
Function Name Type Evidence Reference(s)
product Dps protein nd nd
reactant dps_mRNA RNA nd nd
fhuF_mRNA FhuF
Name: fhuF_mRNA -> FhuF
Description: Translation of FhuF
Type: translation
Pathway Components: fhuF_mRNA -> FhuF
Components:
Function Name Type Evidence Reference(s)
product FhuF protein nd nd
reactant fhuF_mRNA RNA nd nd
ychF_mRNA YchF
Name: ychF_mRNA -> YchF
Description: Translation of YchF
Type: translation
Pathway Components: ychF_mRNA -> YchF
Components:
Function Name Type Evidence Reference(s)
product YchF protein nd nd
reactant ychF_mRNA RNA nd nd
katG_mRNA KatG
Name: katG_mRNA -> KatG
Description: Translation of KatG
Type: translation
Pathway Components: katG_mRNA -> KatG
Components:
Function Name Type Evidence Reference(s)
product KatG protein nd nd
reactant katG_mRNA RNA nd nd
KatG perhydrol oxygen
Name: perhydrol -> oxygen
Description: Reaction transforming perhydrol into oxygen
Type: state transition
Pathway Components: perhydrol - KatG -> oxygen
Components:
Function Name Type Evidence Reference(s)
catalyzer KatG protein nd nd
product oxygen simple_molecule nd nd
reactant perhydrol simple_molecule nd nd
KatG perhydrol + A(H2) acceptors
Name: perhydrol + A(H2) -> acceptors
Description: Reaction transforming perhydrol, A(H2) into acceptors
Type: state transition
Pathway Components: perhydrol + A(H2) - KatG -> acceptors
Components:
Function Name Type Evidence Reference(s)
reactant A(H2) simple_molecule nd nd
catalyzer KatG protein nd nd
product acceptors simple_molecule nd nd
reactant perhydrol simple_molecule nd nd
ybjC-nfsA-rimK-ybjN_mRNA YbjC
Name: ybjC-nfsA-rimK-ybjN_mRNA -> YbjC
Description: Translation of YbjC
Type: translation
Pathway Components: ybjC-nfsA-rimK-ybjN_mRNA -> YbjC
Components:
Function Name Type Evidence Reference(s)
product YbjC protein nd nd
reactant ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
ybjC-nfsA-rimK-ybjN_mRNA NfsA
Name: ybjC-nfsA-rimK-ybjN_mRNA -> NfsA
Description: Translation of NfsA
Type: translation
Pathway Components: ybjC-nfsA-rimK-ybjN_mRNA -> NfsA
Components:
Function Name Type Evidence Reference(s)
product NfsA protein nd nd
reactant ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
NfsA oxidized nitroaromatic compound reduced nitroaromatic compound
Name: oxidized nitroaromatic compound -> reduced nitroaromatic compound
Description: Reaction transforming oxidized nitroaromatic compound into reduced nitroaromatic compound
Type: state transition
Pathway Components: oxidized nitroaromatic compound - NfsA -> reduced nitroaromatic compound
Components:
Function Name Type Evidence Reference(s)
catalyzer NfsA protein nd nd
reactant oxidized nitroaromatic compound simple_molecule nd nd
product reduced nitroaromatic compound simple_molecule nd nd
ybjC-nfsA-rimK-ybjN_mRNA RimK
Name: ybjC-nfsA-rimK-ybjN_mRNA -> RimK
Description: Translation of RimK
Type: translation
Pathway Components: ybjC-nfsA-rimK-ybjN_mRNA -> RimK
Components:
Function Name Type Evidence Reference(s)
product RimK protein nd nd
reactant ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
RimK [protein] C-terminal L-glutamate + L-glutamate [protein] α-L-glu-α-L-glu + phosphate
Name: [protein] C-terminal L-glutamate + L-glutamate -> [protein] α-L-glu-α-L-glu + phosphate
Description: Reaction transforming [protein] C-terminal L-glutamate, L-glutamate into [protein] α-L-glu-α-L-glu, phosphate
Type: state transition
Pathway Components: [protein] C-terminal L-glutamate + L-glutamate - RimK -> [protein] α-L-glu-α-L-glu + phosphate
Components:
Function Name Type Evidence Reference(s)
reactant L-glutamate simple_molecule nd nd
catalyzer RimK protein nd nd
product [protein] α-L-glu-α-L-glu simple_molecule nd nd
reactant [protein] C-terminal L-glutamate simple_molecule nd nd
product phosphate simple_molecule nd nd
ybjC-nfsA-rimK-ybjN_mRNA YbjN
Name: ybjC-nfsA-rimK-ybjN_mRNA -> YbjN
Description: Translation of YbjN
Type: translation
Pathway Components: ybjC-nfsA-rimK-ybjN_mRNA -> YbjN
Components:
Function Name Type Evidence Reference(s)
product YbjN protein nd nd
reactant ybjC-nfsA-rimK-ybjN_mRNA RNA nd nd
uxuAB_mRNA UxuA
Name: uxuAB_mRNA -> UxuA
Description: Translation of UxuA
Type: translation
Pathway Components: uxuAB_mRNA -> UxuA
Components:
Function Name Type Evidence Reference(s)
product UxuA protein nd nd
reactant uxuAB_mRNA RNA nd nd
Fe+2 Mn(II) UxuA gluconate mannonate 2-keto-3-deoxygluconate
Name: mannonate -> 2-keto-3-deoxygluconate
Description: Reaction transforming mannonate into 2-keto-3-deoxygluconate
Type: state transition
Pathway Components: mannonate - UxuA - Fe+2 - Mn(II) - gluconate -> 2-keto-3-deoxygluconate
Components:
Function Name Type Evidence Reference(s)
product 2-keto-3-deoxygluconate simple_molecule nd nd
inhibitor Fe+2 simple_molecule nd nd
inhibitor Mn(II) simple_molecule nd nd
catalyzer UxuA protein nd nd
inhibitor gluconate simple_molecule nd nd
reactant mannonate simple_molecule nd nd
uxuAB_mRNA UxuB
Name: uxuAB_mRNA -> UxuB
Description: Translation of UxuB
Type: translation
Pathway Components: uxuAB_mRNA -> UxuB
Components:
Function Name Type Evidence Reference(s)
product UxuB protein nd nd
reactant uxuAB_mRNA RNA nd nd
Mn(II) UxuB mannonate fructuronate
Name: mannonate -> fructuronate
Description: Reaction transforming mannonate into fructuronate
Type: state transition
Pathway Components: mannonate - UxuB - Mn(II) -> fructuronate
Components:
Function Name Type Evidence Reference(s)
inhibitor Mn(II) simple_molecule nd nd
catalyzer UxuB protein nd nd
product fructuronate simple_molecule nd nd
reactant mannonate simple_molecule nd nd
hemH_mRNA HemH
Name: hemH_mRNA -> HemH
Description: Translation of HemH
Type: translation
Pathway Components: hemH_mRNA -> HemH
Components:
Function Name Type Evidence Reference(s)
product HemH protein nd nd
reactant hemH_mRNA RNA nd nd
HemH protoporphyrin + Fe+2 protoheme IX
Name: protoporphyrin + Fe+2 -> protoheme IX
Description: Reaction transforming protoporphyrin, Fe+2 into protoheme IX
Type: state transition
Pathway Components: protoporphyrin + Fe+2 - HemH -> protoheme IX
Components:
Function Name Type Evidence Reference(s)
reactant Fe+2 simple_molecule nd nd
catalyzer HemH protein nd nd
product protoheme IX simple_molecule nd nd
reactant protoporphyrin simple_molecule nd nd
hcp-hcr_mRNA Hcp
Name: hcp-hcr_mRNA -> Hcp
Description: Translation of Hcp