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PdhR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
FPP D-lactate D-lactate_Ext L-lactate L-lactate_Ext L-malate 2-(alpha-hydroxyethyl)-TPP ketoglutarate 5'-deoxyadenosine 5,10-methylenetetrahydrofolate L-alanine AceE AceF CO2 Cu(I) Cu(II) CyoA CyoB CyoC CyoD CyoE D-ala D-alanyl-D-alanine D-glu DdlB ExbB ExbD FecA FecB FecC FecD FecE FtsA FtsI FtsL FtsQ FtsW FtsZ GcvH GcvP GcvT GlcA GlcB GlcD GlcE GlcF GlcG GrcA HemL Hha L-alanine L-methionine LipA Lpd LpxC MraY MraZ MurC MurD MurE MurF MurG N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine_Ext N4-methylcytidine1402  in 16S rRNA Ndh PdhR pyruvate RsmH S-adenosyl-L-homocysteine S-adenosyl-L-methionine sulfur(2-) SucA SucB TomB TonB Udp UDP-3-O-(3-hydroxytetradecanoyl)glucosamine UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine UDP-GlcNAc UDP-N-acetylmuramoyl-L-alanyl-D-glutamate UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine UDP-N-acetylmuramyl-L-Ala UDP-N-alpha-D-acetylmuramate UMP a [2-oxoglutarate dehydrogenase E2 protein] N6-S-succinyldihydrolipoyl-L-lysine an enzyme N6-(dihydrolipoyl)lysine an enzyme N6-(lipoyl)lysine a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine a [glycine-cleavage complex H protein] N6-dihydrolipoyl-L-lysine a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine an [enzyme] N6-(dihydrolipoyl)lysine lipoyl-domain an octanoylated protein lipoyl-domain an [enzyme] N6-(S-acetyldihydrolipoyl)lysine a [pyruvate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine a peptidoglycan dimer (meso-diaminopimelate containing) a peptidoglycan with D,D cross-links (meso-diaminopimelate containing) a reduced electron acceptor acetate ac-CoA ammonia an oxidized electron acceptor an ubiquinol an ubiquinol_Ext ubiquinone CoA cyoABCDE cyoABCDE_mRNA cytidine1402 in 16S rRNA UPP (ambiguous) ditrans,polycis-undecaprenyl phosphate PP fecABCDE fecABCDE_mRNA iron dicitrate iron dicitrate_Ext glcDEFGBA glcDEFGBA_mRNA glutamate-1-semialdehyde glycine glycolate glycolate_Ext glyoxylate grcA grcA_mRNA hemL hemL_mRNA heme o lipA lipA_mRNA M-DAP mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA ndh ndh_mRNA oxygen_Ext pdhR-aceEF-lpd pdhR-aceEF-lpd_mRNA peptidoglycan D-alanyl-DAP crosslink peptidoglycan tetrapeptide, glycan chain 1 peptidoglycan tetrapeptide, glycan chain 2 phosphate protoheme IX pyruvate suc-coa THF TDP tomB-hha tomB-hha_mRNA PdhR pyruvate FecB FecD FecC FecE TonB ExbB ExbD FecA FecE FecC FecD FecB AceE AceF Lpd CyoD CyoA CyoB CyoC FecA ExbD ExbB TonB Lpd GcvP GcvH GcvT SucA SucB Lpd GlcD GlcE GlcF phosphate phosphate phosphate phosphate phosphate D-ala CO2 CO2 CO2 CO2 CO2 pyruvate pyruvate an [enzyme] N6-(S-acetyldihydrolipoyl)lysine an [enzyme] N6-(S-acetyldihydrolipoyl)lysine CO2 CoA CoA CoA a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine a [pyruvate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine 2-(alpha-hydroxyethyl)-TPP TDP glyoxylate suc-coa lipoyl-domain ammonia THF


Gensor Unit       
Name: PdhR
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0055072 - iron ion homeostasis
GO:0045892 - negative regulation of transcription, DNA-templated
GO:0035873 - lactate transmembrane transport
GO:0051991 - UDP-N-acetyl-D-glucosamine:N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol 4-beta-N-acetylglucosaminlytransferase activity
GO:0070475 - rRNA base methylation
GO:0043879 - glycolate transmembrane transporter activity
GO:0008270 - zinc ion binding
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0003824 - catalytic activity
GO:0008360 - regulation of cell shape
GO:0009486 - cytochrome bo3 ubiquinol oxidase activity
Read more >
Components:
Function Name Type
RNA tomB-hha_mRNA RNA


Reactions       
Showing 102 reactions
cyoABCDE cyoABCDE_mRNA
Name: cyoABCDE -> cyoABCDE_mRNA
Description: Transcription of transcription unit cyoABCDE; reaction inhibition by Cra.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant cyoABCDE gene nd nd
product cyoABCDE_mRNA RNA nd nd
fecABCDE fecABCDE_mRNA
Name: fecABCDE -> fecABCDE_mRNA
Description: Transcription of transcription unit fecABCDE; reaction inhibition by Fur-Fe(II).
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product fecABCDE_mRNA RNA nd nd
reactant fecABCDE gene nd nd
glcDEFGBA glcDEFGBA_mRNA
Name: glcDEFGBA -> glcDEFGBA_mRNA
Description: Transcription of transcription unit glcDEFGBA; reaction activation by GlcC-glycolate.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant glcDEFGBA gene nd nd
product glcDEFGBA_mRNA RNA nd nd
grcA grcA_mRNA
Name: grcA -> grcA_mRNA
Description: Transcription of transcription unit grcA; reaction inhibition by Fur-Fe(II).
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant grcA gene nd nd
product grcA_mRNA RNA nd nd
hemL hemL_mRNA
Name: hemL -> hemL_mRNA
Description: Transcription of transcription unit hemL; reaction inhibition by PdhR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product hemL_mRNA RNA nd nd
reactant hemL gene nd nd
lipA lipA_mRNA
Name: lipA -> lipA_mRNA
Description: Transcription of transcription unit lipA; reaction inhibition by PdhR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant lipA gene nd nd
product lipA_mRNA RNA nd nd
mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA
Name: mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC -> mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA
Description: Transcription of transcription unit mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC; reaction inhibition by PdhR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA RNA nd nd
reactant mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC gene nd nd
ndh ndh_mRNA
Name: ndh -> ndh_mRNA
Description: Transcription of transcription unit ndh; reaction inhibition by Fur-Fe(II).
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant ndh gene nd nd
product ndh_mRNA RNA nd nd
pdhR-aceEF-lpd pdhR-aceEF-lpd_mRNA
Name: pdhR-aceEF-lpd -> pdhR-aceEF-lpd_mRNA
Description: Transcription of transcription unit pdhR-aceEF-lpd; reaction inhibition by Cra.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product pdhR-aceEF-lpd_mRNA RNA nd nd
reactant pdhR-aceEF-lpd gene nd nd
tomB-hha tomB-hha_mRNA
Name: tomB-hha -> tomB-hha_mRNA
Description: Transcription of transcription unit tomB-hha; reaction activation by BasR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product tomB-hha_mRNA RNA nd nd
reactant tomB-hha gene nd nd
PdhR + pyruvate PdhR-pyruvate
Name: PdhR + pyruvate -> PdhR-pyruvate
Description: Reaction transforming PdhR, pyruvate into PdhR-pyruvate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant PdhR protein nd nd
product PdhR-pyruvate complex nd nd
reactant pyruvate simple molecule nd nd
mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA FtsW
Name: mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA -> FtsW
Description: Translation of FtsW
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FtsW protein nd nd
reactant mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA RNA nd nd
N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine_Ext N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine
Name: N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine_Ext -> N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine
Description: Transport of N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine_Ext through a bacterial membrane, leading to the presence of N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine_Ext simple molecule nd nd
product N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine simple molecule nd nd
mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA FtsA
Name: mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA -> FtsA
Description: Translation of FtsA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FtsA protein nd nd
reactant mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA RNA nd nd
mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA MurC
Name: mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA -> MurC
Description: Translation of MurC
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA RNA nd nd
product MurC protein nd nd
ala + UDP-N-alpha-D-acetylmuramate UDP-N-acetylmuramyl-L-Ala + phosphate
Name: ala + UDP-N-alpha-D-acetylmuramate -> UDP-N-acetylmuramyl-L-Ala + phosphate
Description: Reaction transforming ala, UDP-N-alpha-D-acetylmuramate into UDP-N-acetylmuramyl-L-Ala, phosphate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product phosphate simple molecule nd nd
reactant ala simple molecule nd nd
product UDP-N-acetylmuramyl-L-Ala simple molecule nd nd
reactant UDP-N-alpha-D-acetylmuramate simple molecule nd nd
mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA MraY
Name: mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA -> MraY
Description: Translation of MraY
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA RNA nd nd
product MraY protein nd nd
UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine + ditrans,polycis-undecaprenyl phosphate N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol + UMP
Name: UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine + ditrans,polycis-undecaprenyl phosphate -> N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol + UMP
Description: Reaction transforming UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine, ditrans,polycis-undecaprenyl phosphate into N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol, UMP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant ditrans,polycis-undecaprenyl phosphate simple molecule nd nd
reactant UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine simple molecule nd nd
product N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol simple molecule nd nd
product UMP simple molecule nd nd
fecABCDE_mRNA FecB
Name: fecABCDE_mRNA -> FecB
Description: Translation of FecB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant fecABCDE_mRNA RNA nd nd
product FecB protein nd nd
FecB + FecD + FecC + FecE + TonB + ExbB + ExbD + FecA FecB-FecD-FecC-FecE-TonB-ExbB-ExbD-FecA
Name: FecB + FecD + FecC + FecE + TonB + ExbB + ExbD + FecA -> FecB-FecD-FecC-FecE-TonB-ExbB-ExbD-FecA
Description: Reaction transforming FecB, FecD, FecC, FecE, TonB, ExbB, ExbD, FecA into FecB-FecD-FecC-FecE-TonB-ExbB-ExbD-FecA
Type: state transition
Components: Show/Hide Components Table
Function Name Type Evidence Reference(s)
reactant FecA protein nd nd
reactant FecE protein nd nd
reactant ExbD protein nd nd
reactant FecD protein nd nd
product FecB-FecD-FecC-FecE-TonB-ExbB-ExbD-FecA complex nd nd
reactant ExbB protein nd nd
reactant FecB protein nd nd
reactant FecC protein nd nd
reactant TonB protein nd nd
iron dicitrate_Ext iron dicitrate
Name: iron dicitrate_Ext -> iron dicitrate
Description: Transport of iron dicitrate_Ext through a bacterial membrane, leading to the presence of iron dicitrate inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant iron dicitrate_Ext simple molecule nd nd
product iron dicitrate simple molecule nd nd
FecE + FecC + FecD + FecB FecE-FecC-FecD-FecB
Name: FecE + FecC + FecD + FecB -> FecE-FecC-FecD-FecB
Description: Reaction transforming FecE, FecC, FecD, FecB into FecE-FecC-FecD-FecB
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product FecE-FecC-FecD-FecB complex nd nd
reactant FecC protein nd nd
reactant FecB protein nd nd
reactant FecD protein nd nd
reactant FecE protein nd nd
iron dicitrate_Ext phosphate + iron dicitrate
Name: iron dicitrate_Ext -> phosphate + iron dicitrate
Description: Transport of iron dicitrate_Ext through a bacterial membrane, leading to the presence of phosphate, iron dicitrate inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product phosphate simple molecule nd nd
product iron dicitrate simple molecule nd nd
reactant iron dicitrate_Ext simple molecule nd nd
mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA LpxC
Name: mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA -> LpxC
Description: Translation of LpxC
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA RNA nd nd
product LpxC protein nd nd
UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + acetate
Name: UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine -> UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + acetate
Description: Reaction transforming UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine into UDP-3-O-(3-hydroxytetradecanoyl)glucosamine, acetate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product acetate simple molecule nd nd
product UDP-3-O-(3-hydroxytetradecanoyl)glucosamine simple molecule nd nd
reactant UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine simple molecule nd nd
mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA RsmH
Name: mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA -> RsmH
Description: Translation of RsmH
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA RNA nd nd
product RsmH protein nd nd
S-adenosyl-L-methionine + cytidine1402 in 16S rRNA S-adenosyl-L-homocysteine + N4-methylcytidine1402 in 16S rRNA
Name: S-adenosyl-L-methionine + cytidine1402 in 16S rRNA -> S-adenosyl-L-homocysteine + N4-methylcytidine1402 in 16S rRNA
Description: Reaction transforming S-adenosyl-L-methionine, cytidine1402 in 16S rRNA into S-adenosyl-L-homocysteine, N4-methylcytidine1402 in 16S rRNA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product S-adenosyl-L-homocysteine simple molecule nd nd
reactant cytidine1402 in 16S rRNA simple molecule nd nd
reactant S-adenosyl-L-methionine simple molecule nd nd
product N4-methylcytidine1402 in 16S rRNA simple molecule nd nd
mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA MurG
Name: mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA -> MurG
Description: Translation of MurG
Type: translation
Components:
Function Name Type Evidence Reference(s)
product MurG protein nd nd
reactant mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA RNA nd nd
N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol + UDP-GlcNAc N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine + UDP
Name: N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol + UDP-GlcNAc -> N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine + UDP
Description: Reaction transforming N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol, UDP-GlcNAc into N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine, UDP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenol simple molecule nd nd
product UDP simple molecule nd nd
product N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine-diphosphoundecaprenyl-N-acetylglucosamine simple molecule nd nd
reactant UDP-GlcNAc simple molecule nd nd
mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA MurE
Name: mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA -> MurE
Description: Translation of MurE
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA RNA nd nd
product MurE protein nd nd
M-DAP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate + phosphate
Name: M-DAP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamate -> UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate + phosphate
Description: Reaction transforming M-DAP, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate into UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate, phosphate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate simple molecule nd nd
reactant UDP-N-acetylmuramoyl-L-alanyl-D-glutamate simple molecule nd nd
reactant M-DAP simple molecule nd nd
product phosphate simple molecule nd nd
ndh_mRNA Ndh
Name: ndh_mRNA -> Ndh
Description: Translation of Ndh
Type: translation
Components:
Function Name Type Evidence Reference(s)
product Ndh protein nd nd
reactant ndh_mRNA RNA nd nd
ubiquinone an ubiquinol
Name: ubiquinone -> an ubiquinol
Description: Reaction transforming ubiquinone into an ubiquinol
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product an ubiquinol simple molecule nd nd
reactant ubiquinone simple molecule nd nd
Cu(II) Cu(I)
Name: Cu(II) -> Cu(I)
Description: Reaction transforming Cu(II) into Cu(I)
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant Cu(II) simple molecule nd nd
product Cu(I) simple molecule nd nd
lipA_mRNA LipA
Name: lipA_mRNA -> LipA
Description: Translation of LipA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant lipA_mRNA RNA nd nd
product LipA protein nd nd
an octanoylated protein lipoyl-domain + S-adenosyl-L-methionine + sulfur(2-) lipoyl-domain + 5′-deoxyadenosine + L-methionine
Name: an octanoylated protein lipoyl-domain + S-adenosyl-L-methionine + sulfur(2-) -> lipoyl-domain + 5′-deoxyadenosine + L-methionine
Description: Reaction transforming an octanoylated protein lipoyl-domain, S-adenosyl-L-methionine, sulfur(2-) into lipoyl-domain, 5′-deoxyadenosine , L-methionine
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant S-adenosyl-L-methionine simple molecule nd nd
product 5′-deoxyadenosine simple molecule nd nd
product L-methionine simple molecule nd nd
reactant sulfur(2-) simple molecule nd nd
reactant an octanoylated protein lipoyl-domain simple molecule nd nd
product lipoyl-domain simple molecule nd nd
fecABCDE_mRNA FecD
Name: fecABCDE_mRNA -> FecD
Description: Translation of FecD
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant fecABCDE_mRNA RNA nd nd
product FecD protein nd nd
grcA_mRNA GrcA
Name: grcA_mRNA -> GrcA
Description: Translation of GrcA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant grcA_mRNA RNA nd nd
product GrcA protein nd nd
mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA MurD
Name: mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA -> MurD
Description: Translation of MurD
Type: translation
Components:
Function Name Type Evidence Reference(s)
product MurD protein nd nd
reactant mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA RNA nd nd
D-glu + UDP-N-acetylmuramyl-L-Ala UDP-N-acetylmuramoyl-L-alanyl-D-glutamate + phosphate
Name: D-glu + UDP-N-acetylmuramyl-L-Ala -> UDP-N-acetylmuramoyl-L-alanyl-D-glutamate + phosphate
Description: Reaction transforming D-glu, UDP-N-acetylmuramyl-L-Ala into UDP-N-acetylmuramoyl-L-alanyl-D-glutamate, phosphate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant D-glu simple molecule nd nd
reactant UDP-N-acetylmuramyl-L-Ala simple molecule nd nd
product phosphate simple molecule nd nd
product UDP-N-acetylmuramoyl-L-alanyl-D-glutamate simple molecule nd nd
pdhR-aceEF-lpd_mRNA AceE
Name: pdhR-aceEF-lpd_mRNA -> AceE
Description: Translation of AceE
Type: translation
Components:
Function Name Type Evidence Reference(s)
product AceE protein nd nd
reactant pdhR-aceEF-lpd_mRNA RNA nd nd
AceE + AceF + Lpd AceE-AceF-Lpd
Name: AceE + AceF + Lpd -> AceE-AceF-Lpd
Description: Reaction transforming AceE, AceF, Lpd into AceE-AceF-Lpd
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant AceF protein nd nd
reactant AceE protein nd nd
product AceE-AceF-Lpd complex nd nd
reactant Lpd protein nd nd
pyruvate + CoA ac-CoA + CO2
Name: pyruvate + CoA -> ac-CoA + CO2
Description: Reaction transforming pyruvate, CoA into ac-CoA, CO2
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant CoA simple molecule nd nd
reactant pyruvate simple molecule nd nd
product ac-CoA simple molecule nd nd
product CO2 simple molecule nd nd
pyruvate + a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine an [enzyme] N6-(S-acetyldihydrolipoyl)lysine + CO2
Name: pyruvate + a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine -> an [enzyme] N6-(S-acetyldihydrolipoyl)lysine + CO2
Description: Reaction transforming pyruvate, a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine into an [enzyme] N6-(S-acetyldihydrolipoyl)lysine, CO2
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine simple molecule nd nd
product CO2 simple molecule nd nd
product an [enzyme] N6-(S-acetyldihydrolipoyl)lysine simple molecule nd nd
reactant pyruvate simple molecule nd nd
ac-CoA + a [pyruvate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine CoA + an [enzyme] N6-(S-acetyldihydrolipoyl)lysine
Name: ac-CoA + a [pyruvate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine -> CoA + an [enzyme] N6-(S-acetyldihydrolipoyl)lysine
Description: Reaction transforming ac-CoA, a [pyruvate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine into CoA, an [enzyme] N6-(S-acetyldihydrolipoyl)lysine
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a [pyruvate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine simple molecule nd nd
product an [enzyme] N6-(S-acetyldihydrolipoyl)lysine simple molecule nd nd
reactant ac-CoA simple molecule nd nd
product CoA simple molecule nd nd
a [pyruvate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine
Name: a [pyruvate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine -> a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine
Description: Reaction transforming a [pyruvate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine into a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine simple molecule nd nd
reactant a [pyruvate dehydrogenase E2 protein] N6-dihydrolipoyl-L-lysine simple molecule nd nd
pyruvate + TDP 2-(alpha-hydroxyethyl)-TPP + CO2
Name: pyruvate + TDP -> 2-(alpha-hydroxyethyl)-TPP + CO2
Description: Reaction transforming pyruvate, TDP into 2-(alpha-hydroxyethyl)-TPP, CO2
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product 2-(alpha-hydroxyethyl)-TPP simple molecule nd nd
reactant pyruvate simple molecule nd nd
reactant TDP simple molecule nd nd
product CO2 simple molecule nd nd
2-(alpha-hydroxyethyl)-TPP + a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine an [enzyme] N6-(S-acetyldihydrolipoyl)lysine + TDP
Name: 2-(alpha-hydroxyethyl)-TPP + a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine -> an [enzyme] N6-(S-acetyldihydrolipoyl)lysine + TDP
Description: Reaction transforming 2-(alpha-hydroxyethyl)-TPP, a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine into an [enzyme] N6-(S-acetyldihydrolipoyl)lysine, TDP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product an [enzyme] N6-(S-acetyldihydrolipoyl)lysine simple molecule nd nd
reactant 2-(alpha-hydroxyethyl)-TPP simple molecule nd nd
reactant a [pyruvate dehydrogenase E2 protein] N6-lipoyl-L-lysine simple molecule nd nd
product TDP simple molecule nd nd
cyoABCDE_mRNA CyoC
Name: cyoABCDE_mRNA -> CyoC
Description: Translation of CyoC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product CyoC protein nd nd
reactant cyoABCDE_mRNA RNA nd nd
CyoD + CyoA + CyoB + CyoC CyoD-CyoA-CyoB-CyoC
Name: CyoD + CyoA + CyoB + CyoC -> CyoD-CyoA-CyoB-CyoC
Description: Reaction transforming CyoD, CyoA, CyoB, CyoC into CyoD-CyoA-CyoB-CyoC
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant CyoC protein nd nd
product CyoD-CyoA-CyoB-CyoC complex nd nd
reactant CyoB protein nd nd
reactant CyoD protein nd nd
reactant CyoA protein nd nd
oxygen_Ext + an ubiquinol_Ext ubiquinone
Name: oxygen_Ext + an ubiquinol_Ext -> ubiquinone
Description: Transport of oxygen_Ext, an ubiquinol_Ext through a bacterial membrane, leading to the presence of ubiquinone inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant an ubiquinol_Ext simple molecule nd nd
reactant oxygen_Ext simple molecule nd nd
product ubiquinone simple molecule nd nd
mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA MurF
Name: mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA -> MurF
Description: Translation of MurF
Type: translation
Components:
Function Name Type Evidence Reference(s)
product MurF protein nd nd
reactant mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA RNA nd nd
D-alanyl-D-alanine + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine + phosphate
Name: D-alanyl-D-alanine + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate -> UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine + phosphate
Description: Reaction transforming D-alanyl-D-alanine, UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate into UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine, phosphate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine simple molecule nd nd
reactant UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelate simple molecule nd nd
product phosphate simple molecule nd nd
reactant D-alanyl-D-alanine simple molecule nd nd
fecABCDE_mRNA FecA
Name: fecABCDE_mRNA -> FecA
Description: Translation of FecA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant fecABCDE_mRNA RNA nd nd
product FecA protein nd nd
FecA + ExbD + ExbB + TonB FecA-ExbD-ExbB-TonB
Name: FecA + ExbD + ExbB + TonB -> FecA-ExbD-ExbB-TonB
Description: Reaction transforming FecA, ExbD, ExbB, TonB into FecA-ExbD-ExbB-TonB
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant ExbB protein nd nd
reactant FecA protein nd nd
reactant TonB protein nd nd
reactant ExbD protein nd nd
product FecA-ExbD-ExbB-TonB complex nd nd
tomB-hha_mRNA TomB
Name: tomB-hha_mRNA -> TomB
Description: Translation of TomB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant tomB-hha_mRNA RNA nd nd
product TomB protein nd nd
tomB-hha_mRNA Hha
Name: tomB-hha_mRNA -> Hha
Description: Translation of Hha
Type: translation
Components:
Function Name Type Evidence Reference(s)
product Hha protein nd nd
reactant tomB-hha_mRNA RNA nd nd
mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA FtsL
Name: mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA -> FtsL
Description: Translation of FtsL
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC_mRNA RNA nd nd
product FtsL protein nd nd
hemL_mRNA HemL
Name: hemL_mRNA -> HemL
Description: Translation of HemL
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant hemL_mRNA RNA nd nd
product HemL protein nd nd
glutamate-1-semialdehyde ALA
Name: glutamate-1-semialdehyde -> ALA
Description: Reaction transforming glutamate-1-semialdehyde into ALA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product ALA simple molecule nd nd
reactant glutamate-1-semialdehyde simple molecule nd nd
pdhR-aceEF-lpd_mRNA PdhR
Name: pdhR-aceEF-lpd_mRNA -> PdhR
Description: Translation of PdhR
Type: translation
Components:
Function Name Type Evidence Reference(s)
product PdhR protein nd nd
reactant pdhR-aceEF-lpd_mRNA RNA nd nd
fecABCDE_mRNA FecE
Name: fecABCDE_mRNA -> FecE
Description: Translation of FecE
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FecE protein nd nd
reactant fecABCDE_mRNA RNA nd nd
cyoABCDE_mRNA CyoE
Name: cyoABCDE_mRNA -> CyoE
Description: Translation of CyoE
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant cyoABCDE_mRNA RNA nd nd
product CyoE protein nd nd
protoheme IX + FPP heme o + PP
Name: protoheme IX + FPP -> heme o + PP
Description: Reaction transforming protoheme IX, FPP into heme o, PP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product PP simple molecule nd nd
product heme o simple molecule nd nd
reactant FPP simple molecule nd nd
reactant protoheme IX simple molecule nd nd
glcDEFGBA_mRNA GlcB
Name: glcDEFGBA_mRNA -> GlcB
Description: Translation of GlcB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GlcB protein nd nd
reactant glcDEFGBA_mRNA RNA nd nd
ac-CoA + glyoxylate L-malate + CoA
Name: ac-CoA + glyoxylate -> L-malate + CoA
Description: Reaction transforming ac-CoA, glyoxylate into L-malate, CoA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant ac-CoA simple molecule nd nd
reactant glyoxylate simple molecule nd nd
product CoA simple molecule nd nd
product L-malate simple molecule nd nd
pdhR-aceEF-lpd_mRNA Lpd
Name: pdhR-aceEF-lpd_mRNA -> Lpd
Description: Translation of Lpd
Type: translation
Components:
Function Name Type Evidence Reference(s)
product Lpd protein nd nd
reactant pdhR-aceEF-lpd_mRNA RNA nd nd
Lpd + GcvP + GcvH + GcvT Lpd-GcvP-GcvH-GcvT
Name: Lpd + GcvP + GcvH + GcvT -> Lpd-GcvP-GcvH-GcvT
Description: Reaction transforming Lpd, GcvP, GcvH, GcvT into Lpd-GcvP-GcvH-GcvT
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant GcvP protein nd nd
reactant Lpd protein nd nd
product Lpd-GcvP-GcvH-GcvT complex nd nd
reactant GcvH protein nd nd
reactant GcvT protein nd nd
glycine + THF 5,10-methylenetetrahydrofolate + ammonia + CO2
Name: glycine + THF -> 5,10-methylenetetrahydrofolate + ammonia + CO2
Description: Reaction transforming glycine, THF into 5,10-methylenetetrahydrofolate, ammonia , CO2
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant glycine simple molecule nd nd
product CO2 simple molecule nd nd
product ammonia simple molecule nd nd
reactant THF simple molecule nd nd
product 5,10-methylenetetrahydrofolate simple molecule nd nd
a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine + glycine a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine + CO2
Name: a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine + glycine -> a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine + CO2
Description: Reaction transforming a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine, glycine into a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine, CO2
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product a [glycine-cleavage complex H protein] N6-aminomethyldihydrolipoyl-L-lysine simple molecule nd nd
reactant glycine simple molecule nd nd
reactant a [glycine-cleavage complex H protein] N6-lipoyl-L-lysine