RegulonDB RegulonDB

OmpR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
RNA:RygB hydrophilic solute or ion 600 Da_Ext partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine disaccharide chitobiose short-chain alcohol_Ext This Gensor Unit is not yet available FlhC RpsP pgaABCD_mRNA glycerol 1-phosphate TolB RNA:SraE nucleoside sra RpsQ FlhC polyol amino acid_Ext omrB csgDEFG_mRNA sugar phosphate 5-methylthioribose_Ext pgaABCD RpsJ Ala-gamma-D-Glu-Dap base(2) LCFA_Ext RpsD BolA poly-beta-1,6-N-acetyl-D-glucosamine_Ext PgaD FlhD RpsO N-acetylneuraminate_Ext fadL_mRNA RpsI Ala-gamma-D-Glu-Dap_Ext disaccharide_Ext RpsL aldonate_Ext trisaccharide flhDC_mRNA RpsF partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext oligopeptide OmpR RNA:MicF NmpC RpsI RpsK BolA RpsN PgaA maltose_Ext amide_Ext OmpF CsgE ion_Ext bolA_mRNA nucleotide RpsK organophosphorus compound_Ext CsgD CsgA RpsA inositol OmpF RpsC EcnB betaine_Ext maltose nmpC uridine-diphosphate MCFA_Ext GrxD caprate_Ext nucleotide_Ext short-chain acid anion beta-Neu5Ac ompF amine CsgG trisaccharide_Ext RpsQ lactone_Ext monocarboxylate_Ext RpsD glycoside RpsF sugar phosphate_Ext OmpR amino acid glycerol 1-phosphate_Ext RpsP dtpA_mRNA This Gensor Unit is not yet available RpsT aldonate monocarboxylate flhDC RpsM inositol_Ext RpsS hydroxy carboxylate FlhD amine_Ext MCFA Sra RpsO organophosphorus compound CsgA_Ext RpsU oligopeptide_Ext nucleoside_Ext lactone RpsE sugar RpsS phosphate hydrophilic solute or ion 600 Da ion 5-methylthioribose PgaC DtpA nucleotide sugar_Ext FadL glycoside_Ext phosphate sra_mRNA beta-Neu5Ac_Ext dtpA chitobiose_Ext short-chain acid anion_Ext caprate csgDEFG RpsU TolB RpsJ dicarboxylate_Ext base(2)_Ext CsgG RpsH dipeptide_Ext CsgE micF_mRNA enterobactin RpsH RpsL PgaD sulfadiazine ompC_mRNA RpsB RpsA nucleotide sugar UDP-GlcNAc omrB_mRNA micF organosulfur compound_Ext PgaB GrxD OmpC RpsM hydroxy carboxylate_Ext N-acetylneuraminate aromatic compound PgaC ompC short-chain alcohol ompF_mRNA CsgF RpsC RpsT dicarboxylate poly-beta-1,6-N-acetyl-D-glucosamine nmpC_mRNA omrA_mRNA aromatic compound_Ext fadL amide acetate RpsE RpsR Sra RpsN RpsR betaine polyol_Ext dipeptide bolA RCHO RpsB RpsG enterobactin_Ext RpsG NAcGlc sugar_Ext LCFA omrA organosulfur compound sulfadiazine_Ext RCHO_Ext


Gensor Unit       
Name: OmpR
Signal name: Changes in extracellular osmolarity.
Classification:
Groups: Cell motility
General function prediction only
Lipid transport and metabolism
Carbohydrate transport and metabolism
Signal transduction mechanisms
Amino acid transport and metabolism
Cell wall/membrane/envelope biogenesis
Gene Ontology Terms (GO): biological_process GO:0042891 - antibiotic transport
GO:0044780 - bacterial-type flagellum assembly
GO:0044781 - bacterial-type flagellum organization
GO:0043213 - bacteriocin transport
GO:0042710 - biofilm formation
GO:0022610 - biological adhesion
Read more >
cellular_component GO:0036405 - anchored component of cell outer membrane
GO:0009279 - cell outer membrane
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0022627 - cytosolic small ribosomal subunit
GO:0045203 - integral component of cell outer membrane
GO:0016021 - integral component of membrane
Read more >
molecular_function GO:0003677 - DNA binding
GO:0008375 - acetylglucosaminyltransferase activity
GO:0042895 - antibiotic transmembrane transporter activity
GO:0001216 - bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
GO:0001217 - bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding
GO:0000986 - bacterial-type proximal promoter sequence-specific DNA binding
GO:0000499 - base pairing with mRNA
Read more >
Components:
  Function Name Type
  simple_molecule 5-methylthioribose simple_molecule
  simple_molecule 5-methylthioribose_Ext simple_molecule
  simple_molecule Ala-γ-D-Glu-Dap simple_molecule
  simple_molecule Ala-γ-D-Glu-Dap_Ext simple_molecule
  protein BolA protein
  complex BolA-GrxD complex
  simple_molecule CsgA simple_molecule
  simple_molecule CsgA_Ext simple_molecule
  protein CsgD protein
  protein CsgE protein
  complex CsgE-CsgG complex
  protein CsgF protein
  protein CsgG protein
  protein DtpA protein
  protein EcnB protein
  protein FadL protein
  protein FlhC protein
  protein FlhD protein
  complex FlhD-FlhC complex
  protein GrxD protein
  simple_molecule LCFA simple_molecule
  simple_molecule LCFA_Ext simple_molecule
  simple_molecule MCFA simple_molecule
  simple_molecule MCFA_Ext simple_molecule
  simple_molecule N-acetylneuraminate simple_molecule
  simple_molecule N-acetylneuraminate_Ext simple_molecule
  simple_molecule NAcGlc simple_molecule
  protein NmpC protein
  protein OmpC protein
  protein OmpF protein
  protein OmpR protein
  complex OmpR-phosphate complex
  protein PgaA protein
  protein PgaB protein
  protein PgaC protein
  protein PgaD protein
  complex PgaD-PgaC complex
  simple_molecule RCHO simple_molecule
  simple_molecule RCHO_Ext simple_molecule
  protein RNA:MicF protein
  protein RNA:RygB protein
  protein RNA:SraE protein
  protein RpsA protein
  complex RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra complex
  protein RpsB protein
  protein RpsC protein
  protein RpsD protein
  protein RpsE protein
  protein RpsF protein
  protein RpsG protein
  protein RpsH protein
  protein RpsI protein
  protein RpsJ protein
  protein RpsK protein
  protein RpsL protein
  protein RpsM protein
  protein RpsN protein
  protein RpsO protein
  protein RpsP protein
  protein RpsQ protein
  protein RpsR protein
  protein RpsS protein
  protein RpsT protein
  protein RpsU protein
  protein Sra protein
  protein TolB protein
  complex TolB-OmpF complex
  simple_molecule UDP-GlcNAc simple_molecule
  simple_molecule acetate simple_molecule
  simple_molecule aldonate simple_molecule
  simple_molecule aldonate_Ext simple_molecule
  simple_molecule amide simple_molecule
  simple_molecule amide_Ext simple_molecule
  simple_molecule amine simple_molecule
  simple_molecule amine_Ext simple_molecule
  simple_molecule amino acid simple_molecule
  simple_molecule amino acid_Ext simple_molecule
  simple_molecule aromatic compound simple_molecule
  simple_molecule aromatic compound_Ext simple_molecule
  simple_molecule base(2) simple_molecule
  simple_molecule base(2)_Ext simple_molecule
  simple_molecule beta-Neu5Ac simple_molecule
  simple_molecule beta-Neu5Ac_Ext simple_molecule
  simple_molecule betaine simple_molecule
  simple_molecule betaine_Ext simple_molecule
  gene bolA gene
  RNA bolA_mRNA RNA
  simple_molecule caprate simple_molecule
  simple_molecule caprate_Ext simple_molecule
  simple_molecule chitobiose simple_molecule
  simple_molecule chitobiose_Ext simple_molecule
  gene csgDEFG gene
  RNA csgDEFG_mRNA RNA
  simple_molecule dicarboxylate simple_molecule
  simple_molecule dicarboxylate_Ext simple_molecule
  simple_molecule dipeptide simple_molecule
  simple_molecule dipeptide_Ext simple_molecule
  simple_molecule disaccharide simple_molecule
  simple_molecule disaccharide_Ext simple_molecule
  gene dtpA gene
  RNA dtpA_mRNA RNA
  gene ecnB gene
  RNA ecnB_mRNA RNA
  simple_molecule enterobactin simple_molecule
  simple_molecule enterobactin_Ext simple_molecule
  gene fadL gene
  RNA fadL_mRNA RNA
  gene flhDC gene
  RNA flhDC_mRNA RNA
  simple_molecule glycerol 1-phosphate simple_molecule
  simple_molecule glycerol 1-phosphate_Ext simple_molecule
  simple_molecule glycoside simple_molecule
  simple_molecule glycoside_Ext simple_molecule
  simple_molecule hydrophilic solute or ion 600 Da simple_molecule
  simple_molecule hydrophilic solute or ion 600 Da_Ext simple_molecule
  simple_molecule hydroxy carboxylate simple_molecule
  simple_molecule hydroxy carboxylate_Ext simple_molecule
  simple_molecule inositol simple_molecule
  simple_molecule inositol_Ext simple_molecule
  simple_molecule ion simple_molecule
  simple_molecule ion_Ext simple_molecule
  simple_molecule lactone simple_molecule
  simple_molecule lactone_Ext simple_molecule
  simple_molecule maltose simple_molecule
  simple_molecule maltose_Ext simple_molecule
  gene micF gene
  RNA micF_mRNA RNA
  simple_molecule monocarboxylate simple_molecule
  simple_molecule monocarboxylate_Ext simple_molecule
  gene nmpC gene
  RNA nmpC_mRNA RNA
  simple_molecule nucleoside simple_molecule
  simple_molecule nucleoside_Ext simple_molecule
  simple_molecule nucleotide simple_molecule
  simple_molecule nucleotide sugar simple_molecule
  simple_molecule nucleotide sugar_Ext simple_molecule
  simple_molecule nucleotide_Ext simple_molecule
  simple_molecule oligopeptide simple_molecule
  simple_molecule oligopeptide_Ext simple_molecule
  gene ompC gene
  RNA ompC_mRNA RNA
  gene ompF gene
  RNA ompF_mRNA RNA
  gene omrA gene
  RNA omrA_mRNA RNA
  gene omrB gene
  RNA omrB_mRNA RNA
  simple_molecule organophosphorus compound simple_molecule
  simple_molecule organophosphorus compound_Ext simple_molecule
  simple_molecule organosulfur compound simple_molecule
  simple_molecule organosulfur compound_Ext simple_molecule
  simple_molecule partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine simple_molecule
  simple_molecule partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext simple_molecule
  gene pgaABCD gene
  RNA pgaABCD_mRNA RNA
  simple_molecule phosphate simple_molecule
  simple_molecule poly-beta-1,6-N-acetyl-D-glucosamine simple_molecule
  simple_molecule poly-beta-1,6-N-acetyl-D-glucosamine_Ext simple_molecule
  simple_molecule polyol simple_molecule
  simple_molecule polyol_Ext simple_molecule
  simple_molecule short-chain acid anion simple_molecule
  simple_molecule short-chain acid anion_Ext simple_molecule
  simple_molecule short-chain alcohol simple_molecule
  simple_molecule short-chain alcohol_Ext simple_molecule
  gene sra gene
  RNA sra_mRNA RNA
  simple_molecule sugar simple_molecule
  simple_molecule sugar phosphate simple_molecule
  simple_molecule sugar phosphate_Ext simple_molecule
  simple_molecule sugar_Ext simple_molecule
  simple_molecule sulfadiazine simple_molecule
  simple_molecule sulfadiazine_Ext simple_molecule
  simple_molecule trisaccharide simple_molecule
  simple_molecule trisaccharide_Ext simple_molecule
  simple_molecule uridine-diphosphate simple_molecule


Reactions       
Showing 89 reactions
phosphate + OmpR OmpR-phosphate
Name: phosphate + OmpR -> OmpR-phosphate
Description: Reaction transforming phosphate, OmpR into OmpR-phosphate
Type: state transition
Pathway Components: phosphate + OmpR -> OmpR-phosphate
csgDEFG csgDEFG_mRNA
Name: csgDEFG -> csgDEFG_mRNA
Description: Transcription of transcription unit csgDEFG. Reaction activation by OmpR-phosphate.
Type: transcription
Pathway Components: csgDEFG - OmpR-phosphate -> csgDEFG_mRNA
dtpA dtpA_mRNA
Name: dtpA -> dtpA_mRNA
Description: Transcription of transcription unit dtpA. Reaction activation by OmpR-phosphate.
Type: transcription
Pathway Components: dtpA - OmpR-phosphate -> dtpA_mRNA
micF micF_mRNA
Name: micF -> micF_mRNA
Description: Transcription of transcription unit micF. Reaction activation by OmpR-phosphate.
Type: transcription
Pathway Components: micF - OmpR-phosphate -> micF_mRNA
ompC ompC_mRNA
Name: ompC -> ompC_mRNA
Description: Transcription of transcription unit ompC. Reaction activation by OmpR-phosphate.
Type: transcription
Pathway Components: ompC - OmpR-phosphate -> ompC_mRNA
ompF ompF_mRNA
Name: ompF -> ompF_mRNA
Description: Transcription of transcription unit ompF. Reaction activation by OmpR-phosphate. Reaction inhibition by OmpR-phosphate.
Type: transcription
Pathway Components: ompF - OmpR-phosphate - OmpR-phosphate -> ompF_mRNA
omrA omrA_mRNA
Name: omrA -> omrA_mRNA
Description: Transcription of transcription unit omrA. Reaction activation by OmpR-phosphate.
Type: transcription
Pathway Components: omrA - OmpR-phosphate -> omrA_mRNA
omrB omrB_mRNA
Name: omrB -> omrB_mRNA
Description: Transcription of transcription unit omrB. Reaction activation by OmpR-phosphate.
Type: transcription
Pathway Components: omrB - OmpR-phosphate -> omrB_mRNA
bolA bolA_mRNA
Name: bolA -> bolA_mRNA
Description: Transcription of transcription unit bolA. Reaction inhibition by OmpR-phosphate.
Type: transcription
Pathway Components: bolA - OmpR-phosphate -> bolA_mRNA
ecnB ecnB_mRNA
Name: ecnB -> ecnB_mRNA
Description: Transcription of transcription unit ecnB. Reaction inhibition by OmpR-phosphate.
Type: transcription
Pathway Components: ecnB - OmpR-phosphate -> ecnB_mRNA
fadL fadL_mRNA
Name: fadL -> fadL_mRNA
Description: Transcription of transcription unit fadL. Reaction inhibition by OmpR-phosphate.
Type: transcription
Pathway Components: fadL - OmpR-phosphate -> fadL_mRNA
flhDC flhDC_mRNA
Name: flhDC -> flhDC_mRNA
Description: Transcription of transcription unit flhDC. Reaction inhibition by OmpR-phosphate.
Type: transcription
Pathway Components: flhDC - OmpR-phosphate -> flhDC_mRNA
nmpC nmpC_mRNA
Name: nmpC -> nmpC_mRNA
Description: Transcription of transcription unit nmpC. Reaction inhibition by OmpR-phosphate.
Type: transcription
Pathway Components: nmpC - OmpR-phosphate -> nmpC_mRNA
pgaABCD pgaABCD_mRNA
Name: pgaABCD -> pgaABCD_mRNA
Description: Transcription of transcription unit pgaABCD. Reaction inhibition by OmpR-phosphate.
Type: transcription
Pathway Components: pgaABCD - OmpR-phosphate -> pgaABCD_mRNA
sra sra_mRNA
Name: sra -> sra_mRNA
Description: Transcription of transcription unit sra. Reaction inhibition by OmpR-phosphate.
Type: transcription
Pathway Components: sra - OmpR-phosphate -> sra_mRNA
bolA_mRNA BolA
Name: bolA_mRNA -> BolA
Description: Translation of BolA
Type: translation
Pathway Components: bolA_mRNA -> BolA
BolA + GrxD BolA-GrxD
Name: BolA + GrxD -> BolA-GrxD
Description: Reaction transforming BolA, GrxD into BolA-GrxD
Type: state transition
Pathway Components: BolA + GrxD -> BolA-GrxD
sra_mRNA Sra
Name: sra_mRNA -> Sra
Description: Translation of Sra
Type: translation
Pathway Components: sra_mRNA -> Sra
RpsJ + RpsC + RpsB + RpsK + RpsD + RpsS + RpsG + RpsM + RpsL + RpsF + RpsR + RpsE + RpsO + RpsI + RpsN + RpsU + RpsH + RpsA + RpsP + RpsQ + RpsT + Sra RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra
Name: RpsJ + RpsC + RpsB + RpsK + RpsD + RpsS + RpsG + RpsM + RpsL + RpsF + RpsR + RpsE + RpsO + RpsI + RpsN + RpsU + RpsH + RpsA + RpsP + RpsQ + RpsT + Sra -> RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra
Description: Reaction transforming RpsJ, RpsC, RpsB, RpsK, RpsD, RpsS, RpsG, RpsM, RpsL, RpsF, RpsR, RpsE, RpsO, RpsI, RpsN, RpsU, RpsH, RpsA, RpsP, RpsQ, RpsT, Sra into RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra
Type: state transition
Pathway Components: RpsJ + RpsC + RpsB + RpsK + RpsD + RpsS + RpsG + RpsM + RpsL + RpsF + RpsR + RpsE + RpsO + RpsI + RpsN + RpsU + RpsH + RpsA + RpsP + RpsQ + RpsT + Sra -> RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra
ompC_mRNA OmpC
Name: ompC_mRNA -> OmpC
Description: Translation of OmpC
Type: translation
Pathway Components: ompC_mRNA -> OmpC
hydrophilic solute or ion 600 Da_Ext hydrophilic solute or ion 600 Da
Name: hydrophilic solute or ion 600 Da_Ext -> hydrophilic solute or ion 600 Da
Description: Transport of hydrophilic solute or ion 600 Da_Ext through a bacterial membrane, leading to the presence of hydrophilic solute or ion 600 Da inside the cell.
Type: transport
Pathway Components: hydrophilic solute or ion 600 Da_Ext - OmpC - OmpF -> hydrophilic solute or ion 600 Da
organophosphorus compound_Ext organophosphorus compound
Name: organophosphorus compound_Ext -> organophosphorus compound
Description: Transport of organophosphorus compound_Ext through a bacterial membrane, leading to the presence of organophosphorus compound inside the cell.
Type: transport
Pathway Components: organophosphorus compound_Ext - OmpC - OmpF -> organophosphorus compound
MCFA_Ext MCFA
Name: MCFA_Ext -> MCFA
Description: Transport of MCFA_Ext through a bacterial membrane, leading to the presence of MCFA inside the cell.
Type: transport
Pathway Components: MCFA_Ext - OmpC - OmpF -> MCFA
caprate_Ext caprate
Name: caprate_Ext -> caprate
Description: Transport of caprate_Ext through a bacterial membrane, leading to the presence of caprate inside the cell.
Type: transport
Pathway Components: caprate_Ext - OmpC - OmpF -> caprate
glycoside_Ext glycoside
Name: glycoside_Ext -> glycoside
Description: Transport of glycoside_Ext through a bacterial membrane, leading to the presence of glycoside inside the cell.
Type: transport
Pathway Components: glycoside_Ext - OmpC - OmpF -> glycoside
sugar_Ext sugar
Name: sugar_Ext -> sugar
Description: Transport of sugar_Ext through a bacterial membrane, leading to the presence of sugar inside the cell.
Type: transport
Pathway Components: sugar_Ext - OmpC - OmpF -> sugar
beta-Neu5Ac_Ext beta-Neu5Ac
Name: beta-Neu5Ac_Ext -> beta-Neu5Ac
Description: Transport of beta-Neu5Ac_Ext through a bacterial membrane, leading to the presence of beta-Neu5Ac inside the cell.
Type: transport
Pathway Components: beta-Neu5Ac_Ext - OmpC - OmpF -> beta-Neu5Ac
N-acetylneuraminate_Ext N-acetylneuraminate
Name: N-acetylneuraminate_Ext -> N-acetylneuraminate
Description: Transport of N-acetylneuraminate_Ext through a bacterial membrane, leading to the presence of N-acetylneuraminate inside the cell.
Type: transport
Pathway Components: N-acetylneuraminate_Ext - OmpC - OmpF -> N-acetylneuraminate
sugar phosphate_Ext sugar phosphate
Name: sugar phosphate_Ext -> sugar phosphate
Description: Transport of sugar phosphate_Ext through a bacterial membrane, leading to the presence of sugar phosphate inside the cell.
Type: transport
Pathway Components: sugar phosphate_Ext - OmpC - OmpF -> sugar phosphate
monocarboxylate_Ext monocarboxylate
Name: monocarboxylate_Ext -> monocarboxylate
Description: Transport of monocarboxylate_Ext through a bacterial membrane, leading to the presence of monocarboxylate inside the cell.
Type: transport
Pathway Components: monocarboxylate_Ext - OmpC - OmpF -> monocarboxylate
aromatic compound_Ext aromatic compound
Name: aromatic compound_Ext -> aromatic compound
Description: Transport of aromatic compound_Ext through a bacterial membrane, leading to the presence of aromatic compound inside the cell.
Type: transport
Pathway Components: aromatic compound_Ext - OmpC - OmpF -> aromatic compound
enterobactin_Ext enterobactin
Name: enterobactin_Ext -> enterobactin
Description: Transport of enterobactin_Ext through a bacterial membrane, leading to the presence of enterobactin inside the cell.
Type: transport
Pathway Components: enterobactin_Ext - OmpC - OmpF -> enterobactin
trisaccharide_Ext trisaccharide
Name: trisaccharide_Ext -> trisaccharide
Description: Transport of trisaccharide_Ext through a bacterial membrane, leading to the presence of trisaccharide inside the cell.
Type: transport
Pathway Components: trisaccharide_Ext - OmpC - OmpF -> trisaccharide
disaccharide_Ext disaccharide
Name: disaccharide_Ext -> disaccharide
Description: Transport of disaccharide_Ext through a bacterial membrane, leading to the presence of disaccharide inside the cell.
Type: transport
Pathway Components: disaccharide_Ext - OmpC - OmpF -> disaccharide
maltose_Ext maltose
Name: maltose_Ext -> maltose
Description: Transport of maltose_Ext through a bacterial membrane, leading to the presence of maltose inside the cell.
Type: transport
Pathway Components: maltose_Ext - OmpC - OmpF -> maltose
chitobiose_Ext chitobiose
Name: chitobiose_Ext -> chitobiose
Description: Transport of chitobiose_Ext through a bacterial membrane, leading to the presence of chitobiose inside the cell.
Type: transport
Pathway Components: chitobiose_Ext - OmpC - OmpF -> chitobiose
oligopeptide_Ext oligopeptide
Name: oligopeptide_Ext -> oligopeptide
Description: Transport of oligopeptide_Ext through a bacterial membrane, leading to the presence of oligopeptide inside the cell.
Type: transport
Pathway Components: oligopeptide_Ext - OmpC - OmpF -> oligopeptide
nucleotide_Ext nucleotide
Name: nucleotide_Ext -> nucleotide
Description: Transport of nucleotide_Ext through a bacterial membrane, leading to the presence of nucleotide inside the cell.
Type: transport
Pathway Components: nucleotide_Ext - OmpC - OmpF -> nucleotide
nucleotide sugar_Ext nucleotide sugar
Name: nucleotide sugar_Ext -> nucleotide sugar
Description: Transport of nucleotide sugar_Ext through a bacterial membrane, leading to the presence of nucleotide sugar inside the cell.
Type: transport
Pathway Components: nucleotide sugar_Ext - OmpC - OmpF -> nucleotide sugar
nucleoside_Ext nucleoside
Name: nucleoside_Ext -> nucleoside
Description: Transport of nucleoside_Ext through a bacterial membrane, leading to the presence of nucleoside inside the cell.
Type: transport
Pathway Components: nucleoside_Ext - OmpC - OmpF -> nucleoside
RCHO_Ext RCHO
Name: RCHO_Ext -> RCHO
Description: Transport of RCHO_Ext through a bacterial membrane, leading to the presence of RCHO inside the cell.
Type: transport
Pathway Components: RCHO_Ext - OmpC - OmpF -> RCHO
lactone_Ext lactone
Name: lactone_Ext -> lactone
Description: Transport of lactone_Ext through a bacterial membrane, leading to the presence of lactone inside the cell.
Type: transport
Pathway Components: lactone_Ext - OmpC - OmpF -> lactone
amide_Ext amide
Name: amide_Ext -> amide
Description: Transport of amide_Ext through a bacterial membrane, leading to the presence of amide inside the cell.
Type: transport
Pathway Components: amide_Ext - OmpC - OmpF -> amide
amine_Ext amine
Name: amine_Ext -> amine
Description: Transport of amine_Ext through a bacterial membrane, leading to the presence of amine inside the cell.
Type: transport
Pathway Components: amine_Ext - OmpC - OmpF -> amine
hydroxy carboxylate_Ext hydroxy carboxylate
Name: hydroxy carboxylate_Ext -> hydroxy carboxylate
Description: Transport of hydroxy carboxylate_Ext through a bacterial membrane, leading to the presence of hydroxy carboxylate inside the cell.
Type: transport
Pathway Components: hydroxy carboxylate_Ext - OmpC - OmpF -> hydroxy carboxylate
aldonate_Ext aldonate
Name: aldonate_Ext -> aldonate
Description: Transport of aldonate_Ext through a bacterial membrane, leading to the presence of aldonate inside the cell.
Type: transport
Pathway Components: aldonate_Ext - OmpC - OmpF -> aldonate
betaine_Ext betaine
Name: betaine_Ext -> betaine
Description: Transport of betaine_Ext through a bacterial membrane, leading to the presence of betaine inside the cell.
Type: transport
Pathway Components: betaine_Ext - OmpC - OmpF -> betaine
5-methylthioribose_Ext 5-methylthioribose
Name: 5-methylthioribose_Ext -> 5-methylthioribose
Description: Transport of 5-methylthioribose_Ext through a bacterial membrane, leading to the presence of 5-methylthioribose inside the cell.
Type: transport
Pathway Components: 5-methylthioribose_Ext - OmpC - OmpF -> 5-methylthioribose
inositol_Ext inositol
Name: inositol_Ext -> inositol
Description: Transport of inositol_Ext through a bacterial membrane, leading to the presence of inositol inside the cell.
Type: transport
Pathway Components: inositol_Ext - OmpC - OmpF -> inositol
amino acid_Ext amino acid
Name: amino acid_Ext -> amino acid
Description: Transport of amino acid_Ext through a bacterial membrane, leading to the presence of amino acid inside the cell.
Type: transport
Pathway Components: amino acid_Ext - OmpC - OmpF -> amino acid
base(2)_Ext base(2)
Name: base(2)_Ext -> base(2)
Description: Transport of base(2)_Ext through a bacterial membrane, leading to the presence of base(2) inside the cell.
Type: transport
Pathway Components: base(2)_Ext - OmpC - OmpF -> base(2)
dicarboxylate_Ext dicarboxylate
Name: dicarboxylate_Ext -> dicarboxylate
Description: Transport of dicarboxylate_Ext through a bacterial membrane, leading to the presence of dicarboxylate inside the cell.
Type: transport
Pathway Components: dicarboxylate_Ext - OmpC - OmpF -> dicarboxylate
polyol_Ext polyol
Name: polyol_Ext -> polyol
Description: Transport of polyol_Ext through a bacterial membrane, leading to the presence of polyol inside the cell.
Type: transport
Pathway Components: polyol_Ext - OmpC - OmpF -> polyol
short-chain alcohol_Ext short-chain alcohol
Name: short-chain alcohol_Ext -> short-chain alcohol
Description: Transport of short-chain alcohol_Ext through a bacterial membrane, leading to the presence of short-chain alcohol inside the cell.
Type: transport
Pathway Components: short-chain alcohol_Ext - OmpC - OmpF -> short-chain alcohol
short-chain acid anion_Ext short-chain acid anion
Name: short-chain acid anion_Ext -> short-chain acid anion
Description: Transport of short-chain acid anion_Ext through a bacterial membrane, leading to the presence of short-chain acid anion inside the cell.
Type: transport
Pathway Components: short-chain acid anion_Ext - OmpC - OmpF -> short-chain acid anion
organosulfur compound_Ext organosulfur compound
Name: organosulfur compound_Ext -> organosulfur compound
Description: Transport of organosulfur compound_Ext through a bacterial membrane, leading to the presence of organosulfur compound inside the cell.
Type: transport
Pathway Components: organosulfur compound_Ext - OmpC - OmpF -> organosulfur compound
sulfadiazine_Ext sulfadiazine
Name: sulfadiazine_Ext -> sulfadiazine
Description: Transport of sulfadiazine_Ext through a bacterial membrane, leading to the presence of sulfadiazine inside the cell.
Type: transport
Pathway Components: sulfadiazine_Ext - OmpC - OmpF -> sulfadiazine
ion_Ext ion
Name: ion_Ext -> ion
Description: Transport of ion_Ext through a bacterial membrane, leading to the presence of ion inside the cell.
Type: transport
Pathway Components: ion_Ext - OmpC - OmpF -> ion
glycerol 1-phosphate_Ext glycerol 1-phosphate
Name: glycerol 1-phosphate_Ext -> glycerol 1-phosphate
Description: Transport of glycerol 1-phosphate_Ext through a bacterial membrane, leading to the presence of glycerol 1-phosphate inside the cell.
Type: transport
Pathway Components: glycerol 1-phosphate_Ext - OmpC - OmpF -> glycerol 1-phosphate
pgaABCD_mRNA PgaA
Name: pgaABCD_mRNA -> PgaA
Description: Translation of PgaA
Type: translation
Pathway Components: pgaABCD_mRNA -> PgaA
partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine
Name: partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext -> partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine
Description: Transport of partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext through a bacterial membrane, leading to the presence of partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine inside the cell.
Type: transport
Pathway Components: partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext - PgaA -> partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine
pgaABCD_mRNA PgaB
Name: pgaABCD_mRNA -> PgaB
Description: Translation of PgaB
Type: translation
Pathway Components: pgaABCD_mRNA -> PgaB
poly-beta-1,6-N-acetyl-D-glucosamine partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine + acetate
Name: poly-beta-1,6-N-acetyl-D-glucosamine -> partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine + acetate
Description: Reaction transforming poly-beta-1,6-N-acetyl-D-glucosamine into partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine, acetate
Type: state transition
Pathway Components: poly-beta-1,6-N-acetyl-D-glucosamine - PgaB -> partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine + acetate
pgaABCD_mRNA PgaC
Name: pgaABCD_mRNA -> PgaC
Description: Translation of PgaC
Type: translation
Pathway Components: pgaABCD_mRNA -> PgaC
PgaC + PgaD PgaD-PgaC
Name: PgaC + PgaD -> PgaD-PgaC
Description: Reaction transforming PgaC, PgaD into PgaD-PgaC
Type: state transition
Pathway Components: PgaC + PgaD -> PgaD-PgaC
poly-beta-1,6-N-acetyl-D-glucosamine_Ext poly-beta-1,6-N-acetyl-D-glucosamine
Name: poly-beta-1,6-N-acetyl-D-glucosamine_Ext -> poly-beta-1,6-N-acetyl-D-glucosamine
Description: Transport of poly-beta-1,6-N-acetyl-D-glucosamine_Ext through a bacterial membrane, leading to the presence of poly-beta-1,6-N-acetyl-D-glucosamine inside the cell.
Type: transport
Pathway Components: poly-beta-1,6-N-acetyl-D-glucosamine_Ext - PgaD-PgaC -> poly-beta-1,6-N-acetyl-D-glucosamine
UDP-GlcNAc + NAcGlc poly-beta-1,6-N-acetyl-D-glucosamine + uridine-diphosphate
Name: UDP-GlcNAc + NAcGlc -> poly-beta-1,6-N-acetyl-D-glucosamine + uridine-diphosphate
Description: Reaction transforming UDP-GlcNAc, NAcGlc into poly-beta-1,6-N-acetyl-D-glucosamine, uridine-diphosphate
Type: state transition
Pathway Components: UDP-GlcNAc + NAcGlc - PgaD-PgaC -> poly-beta-1,6-N-acetyl-D-glucosamine + uridine-diphosphate
pgaABCD_mRNA PgaD
Name: pgaABCD_mRNA -> PgaD
Description: Translation of PgaD
Type: translation
Pathway Components: pgaABCD_mRNA -> PgaD
flhDC_mRNA FlhD
Name: flhDC_mRNA -> FlhD
Description: Translation of FlhD
Type: translation
Pathway Components: flhDC_mRNA -> FlhD
FlhC + FlhD FlhD-FlhC
Name: FlhC + FlhD -> FlhD-FlhC
Description: Reaction transforming FlhC, FlhD into FlhD-FlhC
Type: state transition
Pathway Components: FlhC + FlhD -> FlhD-FlhC
flhDC_mRNA FlhC
Name: flhDC_mRNA -> FlhC
Description: Translation of FlhC
Type: translation
Pathway Components: flhDC_mRNA -> FlhC
dtpA_mRNA DtpA
Name: dtpA_mRNA -> DtpA
Description: Translation of DtpA
Type: translation
Pathway Components: dtpA_mRNA -> DtpA
dipeptide_Ext dipeptide
Name: dipeptide_Ext -> dipeptide
Description: Transport of dipeptide_Ext through a bacterial membrane, leading to the presence of dipeptide inside the cell.
Type: transport
Pathway Components: dipeptide_Ext - DtpA -> dipeptide
Ala-γ-D-Glu-Dap_Ext Ala-γ-D-Glu-Dap
Name: Ala-γ-D-Glu-Dap_Ext -> Ala-γ-D-Glu-Dap
Description: Transport of Ala-γ-D-Glu-Dap_Ext through a bacterial membrane, leading to the presence of Ala-γ-D-Glu-Dap inside the cell.
Type: transport
Pathway Components: Ala-γ-D-Glu-Dap_Ext - DtpA -> Ala-γ-D-Glu-Dap
ecnB_mRNA EcnB
Name: ecnB_mRNA -> EcnB
Description: Translation of EcnB
Type: translation
Pathway Components: ecnB_mRNA -> EcnB
csgDEFG_mRNA CsgD
Name: csgDEFG_mRNA -> CsgD
Description: Translation of CsgD
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgD
csgDEFG_mRNA CsgE
Name: csgDEFG_mRNA -> CsgE
Description: Translation of CsgE
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgE
CsgE + CsgG CsgE-CsgG
Name: CsgE + CsgG -> CsgE-CsgG
Description: Reaction transforming CsgE, CsgG into CsgE-CsgG
Type: state transition
Pathway Components: CsgE + CsgG -> CsgE-CsgG
CsgA_Ext CsgA
Name: CsgA_Ext -> CsgA
Description: Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the cell.
Type: transport
Pathway Components: CsgA_Ext - CsgE-CsgG -> CsgA
csgDEFG_mRNA CsgF
Name: csgDEFG_mRNA -> CsgF
Description: Translation of CsgF
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgF
csgDEFG_mRNA CsgG
Name: csgDEFG_mRNA -> CsgG
Description: Translation of CsgG
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgG
micF_mRNA RNA:MicF
Name: micF_mRNA -> RNA:MicF
Description: Translation of RNA:MicF
Type: translation
Pathway Components: micF_mRNA -> RNA:MicF
omrB_mRNA RNA:RygB
Name: omrB_mRNA -> RNA:RygB
Description: Translation of RNA:RygB
Type: translation
Pathway Components: omrB_mRNA -> RNA:RygB
omrA_mRNA RNA:SraE
Name: omrA_mRNA -> RNA:SraE
Description: Translation of RNA:SraE
Type: translation
Pathway Components: omrA_mRNA -> RNA:SraE
fadL_mRNA FadL
Name: fadL_mRNA -> FadL
Description: Translation of FadL
Type: translation
Pathway Components: fadL_mRNA -> FadL
LCFA_Ext LCFA
Name: LCFA_Ext -> LCFA
Description: Transport of LCFA_Ext through a bacterial membrane, leading to the presence of LCFA inside the cell.
Type: transport
Pathway Components: LCFA_Ext - FadL -> LCFA
ompF_mRNA OmpF
Name: ompF_mRNA -> OmpF
Description: Translation of OmpF
Type: translation
Pathway Components: ompF_mRNA -> OmpF
OmpF + TolB TolB-OmpF
Name: OmpF + TolB -> TolB-OmpF
Description: Reaction transforming OmpF, TolB into TolB-OmpF
Type: state transition
Pathway Components: OmpF + TolB -> TolB-OmpF
nmpC_mRNA NmpC
Name: nmpC_mRNA -> NmpC
Description: Translation of NmpC
Type: translation
Pathway Components: nmpC_mRNA -> NmpC



RegulonDB