RegulonDB

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OmpR Genetic Sensory Response Unit in Escherichia coli K-12 genome

Gensor Unit Map

Gensor Unit

Name:

OmpR

Signal name:

Changes in extracellular osmolarity.

Classification:

Groups:	Cell motility General function prediction only Lipid transport and metabolism Carbohydrate transport and metabolism Signal transduction mechanisms Amino acid transport and metabolism Cell wall/membrane/envelope biogenesis
Gene Ontology Terms (GO):	biological_process	GO:0042891 - antibiotic transport GO:0044780 - bacterial-type flagellum assembly GO:0044781 - bacterial-type flagellum organization GO:0043213 - bacteriocin transport GO:0042710 - biofilm formation GO:0022610 - biological adhesion GO:0005975 - carbohydrate metabolic process GO:0043708 - cell adhesion involved in biofilm formation GO:0071474 - cellular hyperosmotic response GO:0006974 - cellular response to DNA damage stimulus GO:0034605 - cellular response to heat GO:0035442 - dipeptide transmembrane transport GO:0006855 - drug transmembrane transport GO:0120010 - intermembrane phospholipid transfer GO:0034220 - ion transmembrane transport GO:0006811 - ion transport GO:0006869 - lipid transport GO:0015909 - long-chain fatty acid transport GO:0098732 - macromolecule deacylation GO:0015718 - monocarboxylic acid transport GO:1902201 - negative regulation of bacterial-type flagellum-dependent cell motility GO:1900191 - negative regulation of single-species biofilm formation GO:0045892 - negative regulation of transcription, DNA-templated GO:0040033 - negative regulation of translation, ncRNA-mediated GO:0006857 - oligopeptide transport GO:0015833 - peptide transport GO:0015914 - phospholipid transport GO:0015774 - polysaccharide transport GO:2000144 - positive regulation of DNA-templated transcription, initiation GO:0045893 - positive regulation of transcription, DNA-templated GO:0070207 - protein homotrimerization GO:0071806 - protein transmembrane transport GO:0015031 - protein transport GO:1902600 - proton transmembrane transport GO:1902208 - regulation of bacterial-type flagellum assembly GO:1900190 - regulation of single-species biofilm formation GO:0006355 - regulation of transcription, DNA-templated GO:0042493 - response to drug GO:0006979 - response to oxidative stress GO:0009636 - response to toxic substance GO:0044010 - single-species biofilm formation GO:0006351 - transcription, DNA-templated GO:0006412 - translation GO:0055085 - transmembrane transport GO:0006810 - transport GO:0035443 - tripeptide transmembrane transport Read more >
	cellular_component	GO:0036405 - anchored component of cell outer membrane GO:0009279 - cell outer membrane GO:0005737 - cytoplasm GO:0005829 - cytosol GO:0022627 - cytosolic small ribosomal subunit GO:0045203 - integral component of cell outer membrane GO:0016021 - integral component of membrane GO:0005887 - integral component of plasma membrane GO:0031246 - intrinsic component of periplasmic side of cell outer membrane GO:0034702 - ion channel complex GO:0016020 - membrane GO:0030288 - outer membrane-bounded periplasmic space GO:0005886 - plasma membrane GO:0046930 - pore complex GO:0032993 - protein-DNA complex GO:0005840 - ribosome Read more >
	molecular_function	GO:0003677 - DNA binding GO:0008375 - acetylglucosaminyltransferase activity GO:0042895 - antibiotic transmembrane transporter activity GO:0001216 - bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding GO:0001217 - bacterial-type RNA polymerase transcriptional repressor activity, sequence-specific DNA binding GO:0000986 - bacterial-type proximal promoter sequence-specific DNA binding GO:0000499 - base pairing with mRNA GO:0003824 - catalytic activity GO:0042912 - colicin transmembrane transporter activity GO:0071916 - dipeptide transmembrane transporter activity GO:0097718 - disordered domain specific binding GO:0015238 - drug transmembrane transporter activity GO:0016787 - hydrolase activity GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds GO:0042802 - identical protein binding GO:0005216 - ion channel activity GO:0015075 - ion transmembrane transporter activity GO:0022834 - ligand-gated channel activity GO:0015483 - long-chain fatty acid transporting porin activity GO:0048027 - mRNA 5'-UTR binding GO:0046872 - metal ion binding GO:1904680 - peptide transmembrane transporter activity GO:0015333 - peptide:proton symporter activity GO:0015159 - polysaccharide transmembrane transporter activity GO:0015288 - porin activity GO:0047485 - protein N-terminus binding GO:0005515 - protein binding GO:0015078 - proton transmembrane transporter activity GO:0003735 - structural constituent of ribosome GO:0015293 - symporter activity GO:0000976 - transcription regulatory region sequence-specific DNA binding GO:0016740 - transferase activity GO:0016757 - transferase activity, transferring glycosyl groups GO:0000900 - translation repressor activity, mRNA regulatory element binding GO:0022857 - transmembrane transporter activity GO:0005215 - transporter activity GO:0042937 - tripeptide transmembrane transporter activity Read more >

Components:

	Function	Name	Type
	simple_molecule	5-methylthioribose	simple_molecule
	simple_molecule	5-methylthioribose_Ext	simple_molecule
	simple_molecule	Ala-γ-D-Glu-Dap	simple_molecule
	simple_molecule	Ala-γ-D-Glu-Dap_Ext	simple_molecule
	protein	BolA	protein
	complex	BolA-GrxD	complex
	simple_molecule	CsgA	simple_molecule
	simple_molecule	CsgA_Ext	simple_molecule
	protein	CsgD	protein
	protein	CsgE	protein
	complex	CsgE-CsgG	complex
	protein	CsgF	protein
	protein	CsgG	protein
	protein	DtpA	protein
	protein	EcnB	protein
	protein	FadL	protein
	protein	FlhC	protein
	protein	FlhD	protein
	complex	FlhD-FlhC	complex
	protein	GrxD	protein
	simple_molecule	LCFA	simple_molecule
	simple_molecule	LCFA_Ext	simple_molecule
	simple_molecule	MCFA	simple_molecule
	simple_molecule	MCFA_Ext	simple_molecule
	simple_molecule	N-acetylneuraminate	simple_molecule
	simple_molecule	N-acetylneuraminate_Ext	simple_molecule
	simple_molecule	NAcGlc	simple_molecule
	protein	NmpC	protein
	protein	OmpC	protein
	protein	OmpF	protein
	protein	OmpR	protein
	complex	OmpR-phosphate	complex
	protein	PgaA	protein
	protein	PgaB	protein
	protein	PgaC	protein
	protein	PgaD	protein
	complex	PgaD-PgaC	complex
	simple_molecule	RCHO	simple_molecule
	simple_molecule	RCHO_Ext	simple_molecule
	protein	RNA:MicF	protein
	protein	RNA:RygB	protein
	protein	RNA:SraE	protein
	protein	RpsA	protein
	complex	RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra	complex
	protein	RpsB	protein
	protein	RpsC	protein
	protein	RpsD	protein
	protein	RpsE	protein
	protein	RpsF	protein
	protein	RpsG	protein
	protein	RpsH	protein
	protein	RpsI	protein
	protein	RpsJ	protein
	protein	RpsK	protein
	protein	RpsL	protein
	protein	RpsM	protein
	protein	RpsN	protein
	protein	RpsO	protein
	protein	RpsP	protein
	protein	RpsQ	protein
	protein	RpsR	protein
	protein	RpsS	protein
	protein	RpsT	protein
	protein	RpsU	protein
	protein	Sra	protein
	protein	TolB	protein
	complex	TolB-OmpF	complex
	simple_molecule	UDP-GlcNAc	simple_molecule
	simple_molecule	acetate	simple_molecule
	simple_molecule	aldonate	simple_molecule
	simple_molecule	aldonate_Ext	simple_molecule
	simple_molecule	amide	simple_molecule
	simple_molecule	amide_Ext	simple_molecule
	simple_molecule	amine	simple_molecule
	simple_molecule	amine_Ext	simple_molecule
	simple_molecule	amino acid	simple_molecule
	simple_molecule	amino acid_Ext	simple_molecule
	simple_molecule	aromatic compound	simple_molecule
	simple_molecule	aromatic compound_Ext	simple_molecule
	simple_molecule	base(2)	simple_molecule
	simple_molecule	base(2)_Ext	simple_molecule
	simple_molecule	beta-Neu5Ac	simple_molecule
	simple_molecule	beta-Neu5Ac_Ext	simple_molecule
	simple_molecule	betaine	simple_molecule
	simple_molecule	betaine_Ext	simple_molecule
	gene	bolA	gene
	RNA	bolA_mRNA	RNA
	simple_molecule	caprate	simple_molecule
	simple_molecule	caprate_Ext	simple_molecule
	simple_molecule	chitobiose	simple_molecule
	simple_molecule	chitobiose_Ext	simple_molecule
	gene	csgDEFG	gene
	RNA	csgDEFG_mRNA	RNA
	simple_molecule	dicarboxylate	simple_molecule
	simple_molecule	dicarboxylate_Ext	simple_molecule
	simple_molecule	dipeptide	simple_molecule
	simple_molecule	dipeptide_Ext	simple_molecule
	simple_molecule	disaccharide	simple_molecule
	simple_molecule	disaccharide_Ext	simple_molecule
	gene	dtpA	gene
	RNA	dtpA_mRNA	RNA
	gene	ecnB	gene
	RNA	ecnB_mRNA	RNA
	simple_molecule	enterobactin	simple_molecule
	simple_molecule	enterobactin_Ext	simple_molecule
	gene	fadL	gene
	RNA	fadL_mRNA	RNA
	gene	flhDC	gene
	RNA	flhDC_mRNA	RNA
	simple_molecule	glycerol 1-phosphate	simple_molecule
	simple_molecule	glycerol 1-phosphate_Ext	simple_molecule
	simple_molecule	glycoside	simple_molecule
	simple_molecule	glycoside_Ext	simple_molecule
	simple_molecule	hydrophilic solute or ion 600 Da	simple_molecule
	simple_molecule	hydrophilic solute or ion 600 Da_Ext	simple_molecule
	simple_molecule	hydroxy carboxylate	simple_molecule
	simple_molecule	hydroxy carboxylate_Ext	simple_molecule
	simple_molecule	inositol	simple_molecule
	simple_molecule	inositol_Ext	simple_molecule
	simple_molecule	ion	simple_molecule
	simple_molecule	ion_Ext	simple_molecule
	simple_molecule	lactone	simple_molecule
	simple_molecule	lactone_Ext	simple_molecule
	simple_molecule	maltose	simple_molecule
	simple_molecule	maltose_Ext	simple_molecule
	gene	micF	gene
	RNA	micF_mRNA	RNA
	simple_molecule	monocarboxylate	simple_molecule
	simple_molecule	monocarboxylate_Ext	simple_molecule
	gene	nmpC	gene
	RNA	nmpC_mRNA	RNA
	simple_molecule	nucleoside	simple_molecule
	simple_molecule	nucleoside_Ext	simple_molecule
	simple_molecule	nucleotide	simple_molecule
	simple_molecule	nucleotide sugar	simple_molecule
	simple_molecule	nucleotide sugar_Ext	simple_molecule
	simple_molecule	nucleotide_Ext	simple_molecule
	simple_molecule	oligopeptide	simple_molecule
	simple_molecule	oligopeptide_Ext	simple_molecule
	gene	ompC	gene
	RNA	ompC_mRNA	RNA
	gene	ompF	gene
	RNA	ompF_mRNA	RNA
	gene	omrA	gene
	RNA	omrA_mRNA	RNA
	gene	omrB	gene
	RNA	omrB_mRNA	RNA
	simple_molecule	organophosphorus compound	simple_molecule
	simple_molecule	organophosphorus compound_Ext	simple_molecule
	simple_molecule	organosulfur compound	simple_molecule
	simple_molecule	organosulfur compound_Ext	simple_molecule
	simple_molecule	partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine	simple_molecule
	simple_molecule	partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext	simple_molecule
	gene	pgaABCD	gene
	RNA	pgaABCD_mRNA	RNA
	simple_molecule	phosphate	simple_molecule
	simple_molecule	poly-beta-1,6-N-acetyl-D-glucosamine	simple_molecule
	simple_molecule	poly-beta-1,6-N-acetyl-D-glucosamine_Ext	simple_molecule
	simple_molecule	polyol	simple_molecule
	simple_molecule	polyol_Ext	simple_molecule
	simple_molecule	short-chain acid anion	simple_molecule
	simple_molecule	short-chain acid anion_Ext	simple_molecule
	simple_molecule	short-chain alcohol	simple_molecule
	simple_molecule	short-chain alcohol_Ext	simple_molecule
	gene	sra	gene
	RNA	sra_mRNA	RNA
	simple_molecule	sugar	simple_molecule
	simple_molecule	sugar phosphate	simple_molecule
	simple_molecule	sugar phosphate_Ext	simple_molecule
	simple_molecule	sugar_Ext	simple_molecule
	simple_molecule	sulfadiazine	simple_molecule
	simple_molecule	sulfadiazine_Ext	simple_molecule
	simple_molecule	trisaccharide	simple_molecule
	simple_molecule	trisaccharide_Ext	simple_molecule
	simple_molecule	uridine-diphosphate	simple_molecule

Reactions

Showing 89 reactions

Name:	phosphate + OmpR -> OmpR-phosphate
Description:	Reaction transforming phosphate, OmpR into OmpR-phosphate
Type:	state transition
Pathway Components:	phosphate + OmpR -> OmpR-phosphate

Name:	csgDEFG -> csgDEFG_mRNA
Description:	Transcription of transcription unit csgDEFG. Reaction activation by OmpR-phosphate.
Type:	transcription
Pathway Components:	csgDEFG - OmpR-phosphate -> csgDEFG_mRNA

Name:	dtpA -> dtpA_mRNA
Description:	Transcription of transcription unit dtpA. Reaction activation by OmpR-phosphate.
Type:	transcription
Pathway Components:	dtpA - OmpR-phosphate -> dtpA_mRNA

Name:	micF -> micF_mRNA
Description:	Transcription of transcription unit micF. Reaction activation by OmpR-phosphate.
Type:	transcription
Pathway Components:	micF - OmpR-phosphate -> micF_mRNA

Name:	ompC -> ompC_mRNA
Description:	Transcription of transcription unit ompC. Reaction activation by OmpR-phosphate.
Type:	transcription
Pathway Components:	ompC - OmpR-phosphate -> ompC_mRNA

Name:	ompF -> ompF_mRNA
Description:	Transcription of transcription unit ompF. Reaction activation by OmpR-phosphate. Reaction inhibition by OmpR-phosphate.
Type:	transcription
Pathway Components:	ompF - OmpR-phosphate - OmpR-phosphate -> ompF_mRNA

Name:	omrA -> omrA_mRNA
Description:	Transcription of transcription unit omrA. Reaction activation by OmpR-phosphate.
Type:	transcription
Pathway Components:	omrA - OmpR-phosphate -> omrA_mRNA

Name:	omrB -> omrB_mRNA
Description:	Transcription of transcription unit omrB. Reaction activation by OmpR-phosphate.
Type:	transcription
Pathway Components:	omrB - OmpR-phosphate -> omrB_mRNA

Name:	bolA -> bolA_mRNA
Description:	Transcription of transcription unit bolA. Reaction inhibition by OmpR-phosphate.
Type:	transcription
Pathway Components:	bolA - OmpR-phosphate -> bolA_mRNA

Name:	ecnB -> ecnB_mRNA
Description:	Transcription of transcription unit ecnB. Reaction inhibition by OmpR-phosphate.
Type:	transcription
Pathway Components:	ecnB - OmpR-phosphate -> ecnB_mRNA

Name:	fadL -> fadL_mRNA
Description:	Transcription of transcription unit fadL. Reaction inhibition by OmpR-phosphate.
Type:	transcription
Pathway Components:	fadL - OmpR-phosphate -> fadL_mRNA

Name:	flhDC -> flhDC_mRNA
Description:	Transcription of transcription unit flhDC. Reaction inhibition by OmpR-phosphate.
Type:	transcription
Pathway Components:	flhDC - OmpR-phosphate -> flhDC_mRNA

Name:	nmpC -> nmpC_mRNA
Description:	Transcription of transcription unit nmpC. Reaction inhibition by OmpR-phosphate.
Type:	transcription
Pathway Components:	nmpC - OmpR-phosphate -> nmpC_mRNA

Name:	pgaABCD -> pgaABCD_mRNA
Description:	Transcription of transcription unit pgaABCD. Reaction inhibition by OmpR-phosphate.
Type:	transcription
Pathway Components:	pgaABCD - OmpR-phosphate -> pgaABCD_mRNA

Name:	sra -> sra_mRNA
Description:	Transcription of transcription unit sra. Reaction inhibition by OmpR-phosphate.
Type:	transcription
Pathway Components:	sra - OmpR-phosphate -> sra_mRNA

Name:	bolA_mRNA -> BolA
Description:	Translation of BolA
Type:	translation
Pathway Components:	bolA_mRNA -> BolA

Name:	BolA + GrxD -> BolA-GrxD
Description:	Reaction transforming BolA, GrxD into BolA-GrxD
Type:	state transition
Pathway Components:	BolA + GrxD -> BolA-GrxD

Name:	sra_mRNA -> Sra
Description:	Translation of Sra
Type:	translation
Pathway Components:	sra_mRNA -> Sra

Name:	RpsJ + RpsC + RpsB + RpsK + RpsD + RpsS + RpsG + RpsM + RpsL + RpsF + RpsR + RpsE + RpsO + RpsI + RpsN + RpsU + RpsH + RpsA + RpsP + RpsQ + RpsT + Sra -> RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra
Description:	Reaction transforming RpsJ, RpsC, RpsB, RpsK, RpsD, RpsS, RpsG, RpsM, RpsL, RpsF, RpsR, RpsE, RpsO, RpsI, RpsN, RpsU, RpsH, RpsA, RpsP, RpsQ, RpsT, Sra into RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra
Type:	state transition
Pathway Components:	RpsJ + RpsC + RpsB + RpsK + RpsD + RpsS + RpsG + RpsM + RpsL + RpsF + RpsR + RpsE + RpsO + RpsI + RpsN + RpsU + RpsH + RpsA + RpsP + RpsQ + RpsT + Sra -> RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra

Name:	ompC_mRNA -> OmpC
Description:	Translation of OmpC
Type:	translation
Pathway Components:	ompC_mRNA -> OmpC

Name:	hydrophilic solute or ion 600 Da_Ext -> hydrophilic solute or ion 600 Da
Description:	Transport of hydrophilic solute or ion 600 Da_Ext through a bacterial membrane, leading to the presence of hydrophilic solute or ion 600 Da inside the cell.
Type:	transport
Pathway Components:	hydrophilic solute or ion 600 Da_Ext - OmpC - OmpF -> hydrophilic solute or ion 600 Da

Name:	organophosphorus compound_Ext -> organophosphorus compound
Description:	Transport of organophosphorus compound_Ext through a bacterial membrane, leading to the presence of organophosphorus compound inside the cell.
Type:	transport
Pathway Components:	organophosphorus compound_Ext - OmpC - OmpF -> organophosphorus compound

Name:	MCFA_Ext -> MCFA
Description:	Transport of MCFA_Ext through a bacterial membrane, leading to the presence of MCFA inside the cell.
Type:	transport
Pathway Components:	MCFA_Ext - OmpC - OmpF -> MCFA

Name:	caprate_Ext -> caprate
Description:	Transport of caprate_Ext through a bacterial membrane, leading to the presence of caprate inside the cell.
Type:	transport
Pathway Components:	caprate_Ext - OmpC - OmpF -> caprate

Name:	glycoside_Ext -> glycoside
Description:	Transport of glycoside_Ext through a bacterial membrane, leading to the presence of glycoside inside the cell.
Type:	transport
Pathway Components:	glycoside_Ext - OmpC - OmpF -> glycoside

Name:	sugar_Ext -> sugar
Description:	Transport of sugar_Ext through a bacterial membrane, leading to the presence of sugar inside the cell.
Type:	transport
Pathway Components:	sugar_Ext - OmpC - OmpF -> sugar

Name:	beta-Neu5Ac_Ext -> beta-Neu5Ac
Description:	Transport of beta-Neu5Ac_Ext through a bacterial membrane, leading to the presence of beta-Neu5Ac inside the cell.
Type:	transport
Pathway Components:	beta-Neu5Ac_Ext - OmpC - OmpF -> beta-Neu5Ac

Name:	N-acetylneuraminate_Ext -> N-acetylneuraminate
Description:	Transport of N-acetylneuraminate_Ext through a bacterial membrane, leading to the presence of N-acetylneuraminate inside the cell.
Type:	transport
Pathway Components:	N-acetylneuraminate_Ext - OmpC - OmpF -> N-acetylneuraminate

Name:	sugar phosphate_Ext -> sugar phosphate
Description:	Transport of sugar phosphate_Ext through a bacterial membrane, leading to the presence of sugar phosphate inside the cell.
Type:	transport
Pathway Components:	sugar phosphate_Ext - OmpC - OmpF -> sugar phosphate

Name:	monocarboxylate_Ext -> monocarboxylate
Description:	Transport of monocarboxylate_Ext through a bacterial membrane, leading to the presence of monocarboxylate inside the cell.
Type:	transport
Pathway Components:	monocarboxylate_Ext - OmpC - OmpF -> monocarboxylate

Name:	aromatic compound_Ext -> aromatic compound
Description:	Transport of aromatic compound_Ext through a bacterial membrane, leading to the presence of aromatic compound inside the cell.
Type:	transport
Pathway Components:	aromatic compound_Ext - OmpC - OmpF -> aromatic compound

Name:	enterobactin_Ext -> enterobactin
Description:	Transport of enterobactin_Ext through a bacterial membrane, leading to the presence of enterobactin inside the cell.
Type:	transport
Pathway Components:	enterobactin_Ext - OmpC - OmpF -> enterobactin

Name:	trisaccharide_Ext -> trisaccharide
Description:	Transport of trisaccharide_Ext through a bacterial membrane, leading to the presence of trisaccharide inside the cell.
Type:	transport
Pathway Components:	trisaccharide_Ext - OmpC - OmpF -> trisaccharide

Name:	disaccharide_Ext -> disaccharide
Description:	Transport of disaccharide_Ext through a bacterial membrane, leading to the presence of disaccharide inside the cell.
Type:	transport
Pathway Components:	disaccharide_Ext - OmpC - OmpF -> disaccharide

Name:	maltose_Ext -> maltose
Description:	Transport of maltose_Ext through a bacterial membrane, leading to the presence of maltose inside the cell.
Type:	transport
Pathway Components:	maltose_Ext - OmpC - OmpF -> maltose

Name:	chitobiose_Ext -> chitobiose
Description:	Transport of chitobiose_Ext through a bacterial membrane, leading to the presence of chitobiose inside the cell.
Type:	transport
Pathway Components:	chitobiose_Ext - OmpC - OmpF -> chitobiose

Name:	oligopeptide_Ext -> oligopeptide
Description:	Transport of oligopeptide_Ext through a bacterial membrane, leading to the presence of oligopeptide inside the cell.
Type:	transport
Pathway Components:	oligopeptide_Ext - OmpC - OmpF -> oligopeptide

Name:	nucleotide_Ext -> nucleotide
Description:	Transport of nucleotide_Ext through a bacterial membrane, leading to the presence of nucleotide inside the cell.
Type:	transport
Pathway Components:	nucleotide_Ext - OmpC - OmpF -> nucleotide

Name:	nucleotide sugar_Ext -> nucleotide sugar
Description:	Transport of nucleotide sugar_Ext through a bacterial membrane, leading to the presence of nucleotide sugar inside the cell.
Type:	transport
Pathway Components:	nucleotide sugar_Ext - OmpC - OmpF -> nucleotide sugar

Name:	nucleoside_Ext -> nucleoside
Description:	Transport of nucleoside_Ext through a bacterial membrane, leading to the presence of nucleoside inside the cell.
Type:	transport
Pathway Components:	nucleoside_Ext - OmpC - OmpF -> nucleoside

Name:	RCHO_Ext -> RCHO
Description:	Transport of RCHO_Ext through a bacterial membrane, leading to the presence of RCHO inside the cell.
Type:	transport
Pathway Components:	RCHO_Ext - OmpC - OmpF -> RCHO

Name:	lactone_Ext -> lactone
Description:	Transport of lactone_Ext through a bacterial membrane, leading to the presence of lactone inside the cell.
Type:	transport
Pathway Components:	lactone_Ext - OmpC - OmpF -> lactone

Name:	amide_Ext -> amide
Description:	Transport of amide_Ext through a bacterial membrane, leading to the presence of amide inside the cell.
Type:	transport
Pathway Components:	amide_Ext - OmpC - OmpF -> amide

Name:	amine_Ext -> amine
Description:	Transport of amine_Ext through a bacterial membrane, leading to the presence of amine inside the cell.
Type:	transport
Pathway Components:	amine_Ext - OmpC - OmpF -> amine

Name:	hydroxy carboxylate_Ext -> hydroxy carboxylate
Description:	Transport of hydroxy carboxylate_Ext through a bacterial membrane, leading to the presence of hydroxy carboxylate inside the cell.
Type:	transport
Pathway Components:	hydroxy carboxylate_Ext - OmpC - OmpF -> hydroxy carboxylate

Name:	aldonate_Ext -> aldonate
Description:	Transport of aldonate_Ext through a bacterial membrane, leading to the presence of aldonate inside the cell.
Type:	transport
Pathway Components:	aldonate_Ext - OmpC - OmpF -> aldonate

Name:	betaine_Ext -> betaine
Description:	Transport of betaine_Ext through a bacterial membrane, leading to the presence of betaine inside the cell.
Type:	transport
Pathway Components:	betaine_Ext - OmpC - OmpF -> betaine

Name:	5-methylthioribose_Ext -> 5-methylthioribose
Description:	Transport of 5-methylthioribose_Ext through a bacterial membrane, leading to the presence of 5-methylthioribose inside the cell.
Type:	transport
Pathway Components:	5-methylthioribose_Ext - OmpC - OmpF -> 5-methylthioribose

Name:	inositol_Ext -> inositol
Description:	Transport of inositol_Ext through a bacterial membrane, leading to the presence of inositol inside the cell.
Type:	transport
Pathway Components:	inositol_Ext - OmpC - OmpF -> inositol

Name:	amino acid_Ext -> amino acid
Description:	Transport of amino acid_Ext through a bacterial membrane, leading to the presence of amino acid inside the cell.
Type:	transport
Pathway Components:	amino acid_Ext - OmpC - OmpF -> amino acid

Name:	base(2)_Ext -> base(2)
Description:	Transport of base(2)_Ext through a bacterial membrane, leading to the presence of base(2) inside the cell.
Type:	transport
Pathway Components:	base(2)_Ext - OmpC - OmpF -> base(2)

Name:	dicarboxylate_Ext -> dicarboxylate
Description:	Transport of dicarboxylate_Ext through a bacterial membrane, leading to the presence of dicarboxylate inside the cell.
Type:	transport
Pathway Components:	dicarboxylate_Ext - OmpC - OmpF -> dicarboxylate

Name:	polyol_Ext -> polyol
Description:	Transport of polyol_Ext through a bacterial membrane, leading to the presence of polyol inside the cell.
Type:	transport
Pathway Components:	polyol_Ext - OmpC - OmpF -> polyol

Name:	short-chain alcohol_Ext -> short-chain alcohol
Description:	Transport of short-chain alcohol_Ext through a bacterial membrane, leading to the presence of short-chain alcohol inside the cell.
Type:	transport
Pathway Components:	short-chain alcohol_Ext - OmpC - OmpF -> short-chain alcohol

Name:	short-chain acid anion_Ext -> short-chain acid anion
Description:	Transport of short-chain acid anion_Ext through a bacterial membrane, leading to the presence of short-chain acid anion inside the cell.
Type:	transport
Pathway Components:	short-chain acid anion_Ext - OmpC - OmpF -> short-chain acid anion

Name:	organosulfur compound_Ext -> organosulfur compound
Description:	Transport of organosulfur compound_Ext through a bacterial membrane, leading to the presence of organosulfur compound inside the cell.
Type:	transport
Pathway Components:	organosulfur compound_Ext - OmpC - OmpF -> organosulfur compound

Name:	sulfadiazine_Ext -> sulfadiazine
Description:	Transport of sulfadiazine_Ext through a bacterial membrane, leading to the presence of sulfadiazine inside the cell.
Type:	transport
Pathway Components:	sulfadiazine_Ext - OmpC - OmpF -> sulfadiazine

Name:	ion_Ext -> ion
Description:	Transport of ion_Ext through a bacterial membrane, leading to the presence of ion inside the cell.
Type:	transport
Pathway Components:	ion_Ext - OmpC - OmpF -> ion

Name:	glycerol 1-phosphate_Ext -> glycerol 1-phosphate
Description:	Transport of glycerol 1-phosphate_Ext through a bacterial membrane, leading to the presence of glycerol 1-phosphate inside the cell.
Type:	transport
Pathway Components:	glycerol 1-phosphate_Ext - OmpC - OmpF -> glycerol 1-phosphate

Name:	pgaABCD_mRNA -> PgaA
Description:	Translation of PgaA
Type:	translation
Pathway Components:	pgaABCD_mRNA -> PgaA

Name:	partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext -> partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine
Description:	Transport of partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext through a bacterial membrane, leading to the presence of partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine inside the cell.
Type:	transport
Pathway Components:	partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext - PgaA -> partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine

Name:	pgaABCD_mRNA -> PgaB
Description:	Translation of PgaB
Type:	translation
Pathway Components:	pgaABCD_mRNA -> PgaB

Name:	poly-beta-1,6-N-acetyl-D-glucosamine -> partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine + acetate
Description:	Reaction transforming poly-beta-1,6-N-acetyl-D-glucosamine into partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine, acetate
Type:	state transition
Pathway Components:	poly-beta-1,6-N-acetyl-D-glucosamine - PgaB -> partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine + acetate

Name:	pgaABCD_mRNA -> PgaC
Description:	Translation of PgaC
Type:	translation
Pathway Components:	pgaABCD_mRNA -> PgaC

Name:	PgaC + PgaD -> PgaD-PgaC
Description:	Reaction transforming PgaC, PgaD into PgaD-PgaC
Type:	state transition
Pathway Components:	PgaC + PgaD -> PgaD-PgaC

Name:	poly-beta-1,6-N-acetyl-D-glucosamine_Ext -> poly-beta-1,6-N-acetyl-D-glucosamine
Description:	Transport of poly-beta-1,6-N-acetyl-D-glucosamine_Ext through a bacterial membrane, leading to the presence of poly-beta-1,6-N-acetyl-D-glucosamine inside the cell.
Type:	transport
Pathway Components:	poly-beta-1,6-N-acetyl-D-glucosamine_Ext - PgaD-PgaC -> poly-beta-1,6-N-acetyl-D-glucosamine

Name:	UDP-GlcNAc + NAcGlc -> poly-beta-1,6-N-acetyl-D-glucosamine + uridine-diphosphate
Description:	Reaction transforming UDP-GlcNAc, NAcGlc into poly-beta-1,6-N-acetyl-D-glucosamine, uridine-diphosphate
Type:	state transition
Pathway Components:	UDP-GlcNAc + NAcGlc - PgaD-PgaC -> poly-beta-1,6-N-acetyl-D-glucosamine + uridine-diphosphate

Name:	pgaABCD_mRNA -> PgaD
Description:	Translation of PgaD
Type:	translation
Pathway Components:	pgaABCD_mRNA -> PgaD

Name:	flhDC_mRNA -> FlhD
Description:	Translation of FlhD
Type:	translation
Pathway Components:	flhDC_mRNA -> FlhD

Name:	FlhC + FlhD -> FlhD-FlhC
Description:	Reaction transforming FlhC, FlhD into FlhD-FlhC
Type:	state transition
Pathway Components:	FlhC + FlhD -> FlhD-FlhC

Name:	flhDC_mRNA -> FlhC
Description:	Translation of FlhC
Type:	translation
Pathway Components:	flhDC_mRNA -> FlhC

Name:	dtpA_mRNA -> DtpA
Description:	Translation of DtpA
Type:	translation
Pathway Components:	dtpA_mRNA -> DtpA

Name:	dipeptide_Ext -> dipeptide
Description:	Transport of dipeptide_Ext through a bacterial membrane, leading to the presence of dipeptide inside the cell.
Type:	transport
Pathway Components:	dipeptide_Ext - DtpA -> dipeptide

Name:	Ala-γ-D-Glu-Dap_Ext -> Ala-γ-D-Glu-Dap
Description:	Transport of Ala-γ-D-Glu-Dap_Ext through a bacterial membrane, leading to the presence of Ala-γ-D-Glu-Dap inside the cell.
Type:	transport
Pathway Components:	Ala-γ-D-Glu-Dap_Ext - DtpA -> Ala-γ-D-Glu-Dap

Name:	ecnB_mRNA -> EcnB
Description:	Translation of EcnB
Type:	translation
Pathway Components:	ecnB_mRNA -> EcnB

Name:	csgDEFG_mRNA -> CsgD
Description:	Translation of CsgD
Type:	translation
Pathway Components:	csgDEFG_mRNA -> CsgD

Name:	csgDEFG_mRNA -> CsgE
Description:	Translation of CsgE
Type:	translation
Pathway Components:	csgDEFG_mRNA -> CsgE

Name:	CsgE + CsgG -> CsgE-CsgG
Description:	Reaction transforming CsgE, CsgG into CsgE-CsgG
Type:	state transition
Pathway Components:	CsgE + CsgG -> CsgE-CsgG

Name:	CsgA_Ext -> CsgA
Description:	Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the cell.
Type:	transport
Pathway Components:	CsgA_Ext - CsgE-CsgG -> CsgA

Name:	csgDEFG_mRNA -> CsgF
Description:	Translation of CsgF
Type:	translation
Pathway Components:	csgDEFG_mRNA -> CsgF

Name:	csgDEFG_mRNA -> CsgG
Description:	Translation of CsgG
Type:	translation
Pathway Components:	csgDEFG_mRNA -> CsgG

Name:	micF_mRNA -> RNA:MicF
Description:	Translation of RNA:MicF
Type:	translation
Pathway Components:	micF_mRNA -> RNA:MicF

Name:	omrB_mRNA -> RNA:RygB
Description:	Translation of RNA:RygB
Type:	translation
Pathway Components:	omrB_mRNA -> RNA:RygB

Name:	omrA_mRNA -> RNA:SraE
Description:	Translation of RNA:SraE
Type:	translation
Pathway Components:	omrA_mRNA -> RNA:SraE

Name:	fadL_mRNA -> FadL
Description:	Translation of FadL
Type:	translation
Pathway Components:	fadL_mRNA -> FadL

Name:	LCFA_Ext -> LCFA
Description:	Transport of LCFA_Ext through a bacterial membrane, leading to the presence of LCFA inside the cell.
Type:	transport
Pathway Components:	LCFA_Ext - FadL -> LCFA

Name:	ompF_mRNA -> OmpF
Description:	Translation of OmpF
Type:	translation
Pathway Components:	ompF_mRNA -> OmpF

Name:	OmpF + TolB -> TolB-OmpF
Description:	Reaction transforming OmpF, TolB into TolB-OmpF
Type:	state transition
Pathway Components:	OmpF + TolB -> TolB-OmpF

Name:	nmpC_mRNA -> NmpC
Description:	Translation of NmpC
Type:	translation
Pathway Components:	nmpC_mRNA -> NmpC

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