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OmpR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
(3E,5Z)-tetradecadienoate (3E,5Z)-tetradecadienoate_Ext BolA CsgD CsgE CsgF CsgG EcnB FadL FlhC FlhD This Gensor Unit is not yet available NmpC OmpC OmpF OmpR This Gensor Unit is not yet available This Gensor Unit is not yet available Sra TppB LCFA LCFA_Ext a tripeptide a tripeptide_Ext bolA bolA_mRNA csgDEFG csgDEFG_mRNA CsgA CsgA_Ext This Gensor Unit is not yet available This Gensor Unit is not yet available fadL fadL_mRNA flhDC flhDC_mRNA glycine betaine glycine betaine_Ext hydrophilic solute or ion < 600 Da hydrophilic solute or ion < 600 Da_Ext micF micF_mRNA nmpC nmpC_mRNA ompC ompC_mRNA ompF ompF_mRNA omrA omrA_mRNA omrB omrB_mRNA sra sra_mRNA This Gensor Unit is not yet available This Gensor Unit is not yet available phosphate CsgG CsgE CsgF OmpR phosphate


Gensor Unit       
Name: OmpR
Classification:
Groups: GUs related to the two-component system
Gene Ontology Terms (GO): GO:0000986 - bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding
GO:0046930 - pore complex
GO:0008270 - zinc ion binding
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0016020 - membrane
GO:1902208 - regulation of bacterial-type flagellum assembly
GO:0044010 - single-species biofilm formation
GO:0006811 - ion transport
GO:0005737 - cytoplasm
GO:0003735 - structural constituent of ribosome
GO:0044780 - bacterial-type flagellum assembly
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Components:
Function Name Type
simple molecule phosphate simple molecule


Reactions       
Showing 38 reactions
bolA bolA_mRNA
Name: bolA -> bolA_mRNA
Description: Transcription of transcription unit bolA; reaction inhibition by OmpR-phosphate.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product bolA_mRNA RNA nd nd
reactant bolA gene nd nd
csgDEFG csgDEFG_mRNA
Name: csgDEFG -> csgDEFG_mRNA
Description: Transcription of transcription unit csgDEFG; reaction activation by BasR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product csgDEFG_mRNA RNA nd nd
reactant csgDEFG gene nd nd
ecnB ecnB_mRNA
Name: ecnB -> ecnB_mRNA
Description: Transcription of transcription unit ecnB; reaction inhibition by OmpR-phosphate.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant ecnB gene nd nd
product ecnB_mRNA RNA nd nd
fadL fadL_mRNA
Name: fadL -> fadL_mRNA
Description: Transcription of transcription unit fadL; reaction inhibition by FadR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product fadL_mRNA RNA nd nd
reactant fadL gene nd nd
flhDC flhDC_mRNA
Name: flhDC -> flhDC_mRNA
Description: Transcription of transcription unit flhDC; reaction inhibition by FliZ.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant flhDC gene nd nd
product flhDC_mRNA RNA nd nd
micF micF_mRNA
Name: micF -> micF_mRNA
Description: Transcription of transcription unit micF; reaction activation by HU.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product micF_mRNA RNA nd nd
reactant micF gene nd nd
nmpC nmpC_mRNA
Name: nmpC -> nmpC_mRNA
Description: Transcription of transcription unit nmpC; reaction inhibition by MprA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product nmpC_mRNA RNA nd nd
reactant nmpC gene nd nd
ompC ompC_mRNA
Name: ompC -> ompC_mRNA
Description: Transcription of transcription unit ompC; reaction activation by CpxR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product ompC_mRNA RNA nd nd
reactant ompC gene nd nd
ompF ompF_mRNA
Name: ompF -> ompF_mRNA
Description: Transcription of transcription unit ompF; reaction inhibition by CpxR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant ompF gene nd nd
product ompF_mRNA RNA nd nd
omrA omrA_mRNA
Name: omrA -> omrA_mRNA
Description: Transcription of transcription unit omrA; reaction activation by OmpR-phosphate.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant omrA gene nd nd
product omrA_mRNA RNA nd nd
omrB omrB_mRNA
Name: omrB -> omrB_mRNA
Description: Transcription of transcription unit omrB; reaction activation by OmpR-phosphate.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant omrB gene nd nd
product omrB_mRNA RNA nd nd
sra sra_mRNA
Name: sra -> sra_mRNA
Description: Transcription of transcription unit sra; reaction inhibition by OmpR-phosphate.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant sra gene nd nd
product sra_mRNA RNA nd nd
tppB tppB_mRNA
Name: tppB -> tppB_mRNA
Description: Transcription of transcription unit tppB; reaction activation by OmpR-phosphate.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product tppB_mRNA RNA nd nd
reactant tppB gene nd nd
csgDEFG_mRNA CsgF
Name: csgDEFG_mRNA -> CsgF
Description: Translation of CsgF
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant csgDEFG_mRNA RNA nd nd
product CsgF protein nd nd
CsgG + CsgE + CsgF CsgG-CsgE-CsgF
Name: CsgG + CsgE + CsgF -> CsgG-CsgE-CsgF
Description: Reaction transforming CsgG, CsgE, CsgF into CsgG-CsgE-CsgF
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product CsgG-CsgE-CsgF complex nd nd
reactant CsgF protein nd nd
reactant CsgG protein nd nd
reactant CsgE protein nd nd
CsgA_Ext CsgA
Name: CsgA_Ext -> CsgA
Description: Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant CsgA_Ext simple molecule nd nd
product CsgA simple molecule nd nd
flhDC_mRNA FlhD
Name: flhDC_mRNA -> FlhD
Description: Translation of FlhD
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant flhDC_mRNA RNA nd nd
product FlhD protein nd nd
omrA_mRNA OmrA small regulatory RNA
Name: omrA_mRNA -> OmrA small regulatory RNA
Description: Translation of OmrA small regulatory RNA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant omrA_mRNA RNA nd nd
product OmrA small regulatory RNA RNA nd nd
ecnB_mRNA EcnB
Name: ecnB_mRNA -> EcnB
Description: Translation of EcnB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant ecnB_mRNA RNA nd nd
product EcnB protein nd nd
omrB_mRNA OmrB small regulatory RNA
Name: omrB_mRNA -> OmrB small regulatory RNA
Description: Translation of OmrB small regulatory RNA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant omrB_mRNA RNA nd nd
product OmrB small regulatory RNA RNA nd nd
micF_mRNA MicF small regulatory RNA
Name: micF_mRNA -> MicF small regulatory RNA
Description: Translation of MicF small regulatory RNA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant micF_mRNA RNA nd nd
product MicF small regulatory RNA RNA nd nd
csgDEFG_mRNA CsgE
Name: csgDEFG_mRNA -> CsgE
Description: Translation of CsgE
Type: translation
Components:
Function Name Type Evidence Reference(s)
product CsgE protein nd nd
reactant csgDEFG_mRNA RNA nd nd
sra_mRNA Sra
Name: sra_mRNA -> Sra
Description: Translation of Sra
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant sra_mRNA RNA nd nd
product Sra protein nd nd
ompF_mRNA OmpF
Name: ompF_mRNA -> OmpF
Description: Translation of OmpF
Type: translation
Components:
Function Name Type Evidence Reference(s)
product OmpF protein nd nd
reactant ompF_mRNA RNA nd nd
glycine betaine_Ext glycine betaine
Name: glycine betaine_Ext -> glycine betaine
Description: Transport of glycine betaine_Ext through a bacterial membrane, leading to the presence of glycine betaine inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant glycine betaine_Ext simple molecule nd nd
product glycine betaine simple molecule nd nd
hydrophilic solute or ion < 600 Da_Ext hydrophilic solute or ion < 600 Da
Name: hydrophilic solute or ion < 600 Da_Ext -> hydrophilic solute or ion < 600 Da
Description: Transport of hydrophilic solute or ion < 600 Da_Ext through a bacterial membrane, leading to the presence of hydrophilic solute or ion < 600 Da inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product hydrophilic solute or ion < 600 Da simple molecule nd nd
reactant hydrophilic solute or ion < 600 Da_Ext simple molecule nd nd
nmpC_mRNA NmpC
Name: nmpC_mRNA -> NmpC
Description: Translation of NmpC
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant nmpC_mRNA RNA nd nd
product NmpC protein nd nd
bolA_mRNA BolA
Name: bolA_mRNA -> BolA
Description: Translation of BolA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product BolA protein nd nd
reactant bolA_mRNA RNA nd nd
csgDEFG_mRNA CsgD
Name: csgDEFG_mRNA -> CsgD
Description: Translation of CsgD
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant csgDEFG_mRNA RNA nd nd
product CsgD protein nd nd
tppB_mRNA TppB
Name: tppB_mRNA -> TppB
Description: Translation of TppB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product TppB protein nd nd
reactant tppB_mRNA RNA nd nd
a tripeptide_Ext a tripeptide
Name: a tripeptide_Ext -> a tripeptide
Description: Transport of a tripeptide_Ext through a bacterial membrane, leading to the presence of a tripeptide inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant a tripeptide_Ext simple molecule nd nd
product a tripeptide simple molecule nd nd
csgDEFG_mRNA CsgG
Name: csgDEFG_mRNA -> CsgG
Description: Translation of CsgG
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant csgDEFG_mRNA RNA nd nd
product CsgG protein nd nd
fadL_mRNA FadL
Name: fadL_mRNA -> FadL
Description: Translation of FadL
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FadL protein nd nd
reactant fadL_mRNA RNA nd nd
LCFA_Ext LCFA
Name: LCFA_Ext -> LCFA
Description: Transport of LCFA_Ext through a bacterial membrane, leading to the presence of LCFA inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant LCFA_Ext simple molecule nd nd
product LCFA simple molecule nd nd
(3E,5Z)-tetradecadienoate_Ext (3E,5Z)-tetradecadienoate
Name: (3E,5Z)-tetradecadienoate_Ext -> (3E,5Z)-tetradecadienoate
Description: Transport of (3E,5Z)-tetradecadienoate_Ext through a bacterial membrane, leading to the presence of (3E,5Z)-tetradecadienoate inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product (3E,5Z)-tetradecadienoate simple molecule nd nd
reactant (3E,5Z)-tetradecadienoate_Ext simple molecule nd nd
ompC_mRNA OmpC
Name: ompC_mRNA -> OmpC
Description: Translation of OmpC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product OmpC protein nd nd
reactant ompC_mRNA RNA nd nd
flhDC_mRNA FlhC
Name: flhDC_mRNA -> FlhC
Description: Translation of FlhC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FlhC protein nd nd
reactant flhDC_mRNA RNA nd nd
OmpR + phosphate OmpR-phosphate
Name: OmpR + phosphate -> OmpR-phosphate
Description: Reaction transforming OmpR, phosphate into OmpR-phosphate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant OmpR protein nd nd
product OmpR-phosphate complex nd nd
reactant phosphate simple molecule nd nd



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