RegulonDB

Showing 89 reactions

Name:

phosphate + OmpR -> OmpR-phosphate

Description:

Reaction transforming phosphate, OmpR into OmpR-phosphate

Type:

state transition

Pathway Components:

phosphate + OmpR -> OmpR-phosphate

Components:

Function	Name	Type
reactant	OmpR	protein
product	OmpR-phosphate	complex
reactant	phosphate	simple_molecule

Name:

csgDEFG -> csgDEFG_mRNA

Description:

Transcription of transcription unit csgDEFG. Reaction activation by OmpR-phosphate.

Type:

transcription

Pathway Components:

csgDEFG - OmpR-phosphate -> csgDEFG_mRNA

Components:

Function	Name	Type
activator	OmpR-phosphate	complex
reactant	csgDEFG	gene
product	csgDEFG_mRNA	RNA

Name:

dtpA -> dtpA_mRNA

Description:

Transcription of transcription unit dtpA. Reaction activation by OmpR-phosphate.

Type:

transcription

Pathway Components:

dtpA - OmpR-phosphate -> dtpA_mRNA

Components:

Function	Name	Type
activator	OmpR-phosphate	complex
reactant	dtpA	gene
product	dtpA_mRNA	RNA

Name:

micF -> micF_mRNA

Description:

Transcription of transcription unit micF. Reaction activation by OmpR-phosphate.

Type:

transcription

Pathway Components:

micF - OmpR-phosphate -> micF_mRNA

Components:

Function	Name	Type
activator	OmpR-phosphate	complex
reactant	micF	gene
product	micF_mRNA	RNA

Name:

ompC -> ompC_mRNA

Description:

Transcription of transcription unit ompC. Reaction activation by OmpR-phosphate.

Type:

transcription

Pathway Components:

ompC - OmpR-phosphate -> ompC_mRNA

Components:

Function	Name	Type
activator	OmpR-phosphate	complex
reactant	ompC	gene
product	ompC_mRNA	RNA

Name:

ompF -> ompF_mRNA

Description:

Transcription of transcription unit ompF. Reaction activation by OmpR-phosphate. Reaction inhibition by OmpR-phosphate.

Type:

transcription

Pathway Components:

ompF - OmpR-phosphate - OmpR-phosphate -> ompF_mRNA

Components:

Function	Name	Type
activator	OmpR-phosphate	complex
inhibitor	OmpR-phosphate	complex
reactant	ompF	gene
product	ompF_mRNA	RNA

Name:

omrA -> omrA_mRNA

Description:

Transcription of transcription unit omrA. Reaction activation by OmpR-phosphate.

Type:

transcription

Pathway Components:

omrA - OmpR-phosphate -> omrA_mRNA

Components:

Function	Name	Type
activator	OmpR-phosphate	complex
reactant	omrA	gene
product	omrA_mRNA	RNA

Name:

omrB -> omrB_mRNA

Description:

Transcription of transcription unit omrB. Reaction activation by OmpR-phosphate.

Type:

transcription

Pathway Components:

omrB - OmpR-phosphate -> omrB_mRNA

Components:

Function	Name	Type
activator	OmpR-phosphate	complex
reactant	omrB	gene
product	omrB_mRNA	RNA

Name:

bolA -> bolA_mRNA

Description:

Transcription of transcription unit bolA. Reaction inhibition by OmpR-phosphate.

Type:

transcription

Pathway Components:

bolA - OmpR-phosphate -> bolA_mRNA

Components:

Function	Name	Type
inhibitor	OmpR-phosphate	complex
reactant	bolA	gene
product	bolA_mRNA	RNA

Name:

ecnB -> ecnB_mRNA

Description:

Transcription of transcription unit ecnB. Reaction inhibition by OmpR-phosphate.

Type:

transcription

Pathway Components:

ecnB - OmpR-phosphate -> ecnB_mRNA

Components:

Function	Name	Type
inhibitor	OmpR-phosphate	complex
reactant	ecnB	gene
product	ecnB_mRNA	RNA

Name:

fadL -> fadL_mRNA

Description:

Transcription of transcription unit fadL. Reaction inhibition by OmpR-phosphate.

Type:

transcription

Pathway Components:

fadL - OmpR-phosphate -> fadL_mRNA

Components:

Function	Name	Type
inhibitor	OmpR-phosphate	complex
reactant	fadL	gene
product	fadL_mRNA	RNA

Name:

flhDC -> flhDC_mRNA

Description:

Transcription of transcription unit flhDC. Reaction inhibition by OmpR-phosphate.

Type:

transcription

Pathway Components:

flhDC - OmpR-phosphate -> flhDC_mRNA

Components:

Function	Name	Type
inhibitor	OmpR-phosphate	complex
reactant	flhDC	gene
product	flhDC_mRNA	RNA

Name:

nmpC -> nmpC_mRNA

Description:

Transcription of transcription unit nmpC. Reaction inhibition by OmpR-phosphate.

Type:

transcription

Pathway Components:

nmpC - OmpR-phosphate -> nmpC_mRNA

Components:

Function	Name	Type
inhibitor	OmpR-phosphate	complex
reactant	nmpC	gene
product	nmpC_mRNA	RNA

Name:

pgaABCD -> pgaABCD_mRNA

Description:

Transcription of transcription unit pgaABCD. Reaction inhibition by OmpR-phosphate.

Type:

transcription

Pathway Components:

pgaABCD - OmpR-phosphate -> pgaABCD_mRNA

Components:

Function	Name	Type
inhibitor	OmpR-phosphate	complex
reactant	pgaABCD	gene
product	pgaABCD_mRNA	RNA

Name:

sra -> sra_mRNA

Description:

Transcription of transcription unit sra. Reaction inhibition by OmpR-phosphate.

Type:

transcription

Pathway Components:

sra - OmpR-phosphate -> sra_mRNA

Components:

Function	Name	Type
inhibitor	OmpR-phosphate	complex
reactant	sra	gene
product	sra_mRNA	RNA

Name:

bolA_mRNA -> BolA

Description:

Translation of BolA

Type:

translation

Pathway Components:

bolA_mRNA -> BolA

Components:

Function	Name	Type
product	BolA	protein
reactant	bolA_mRNA	RNA

Name:

BolA + GrxD -> BolA-GrxD

Description:

Reaction transforming BolA, GrxD into BolA-GrxD

Type:

state transition

Pathway Components:

BolA + GrxD -> BolA-GrxD

Components:

Function	Name	Type
reactant	BolA	protein
product	BolA-GrxD	complex
reactant	GrxD	protein

Name:

sra_mRNA -> Sra

Description:

Translation of Sra

Type:

translation

Pathway Components:

sra_mRNA -> Sra

Components:

Function	Name	Type
product	Sra	protein
reactant	sra_mRNA	RNA

Name:

RpsJ + RpsC + RpsB + RpsK + RpsD + RpsS + RpsG + RpsM + RpsL + RpsF + RpsR + RpsE + RpsO + RpsI + RpsN + RpsU + RpsH + RpsA + RpsP + RpsQ + RpsT + Sra -> RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra

Description:

Reaction transforming RpsJ, RpsC, RpsB, RpsK, RpsD, RpsS, RpsG, RpsM, RpsL, RpsF, RpsR, RpsE, RpsO, RpsI, RpsN, RpsU, RpsH, RpsA, RpsP, RpsQ, RpsT, Sra into RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra

Type:

state transition

Pathway Components:

Components:

Show/Hide Components Table

Function	Name	Type
reactant	RpsA	protein
product	RpsA-RpsB-RpsC-RpsD-RpsE-RpsF-RpsG-RpsH-RpsI-RpsJ-RpsK-RpsL-RpsM-RpsN-RpsO-RpsP-RpsQ-RpsR-RpsS-RpsT-RpsU-Sra	complex
reactant	RpsB	protein
reactant	RpsC	protein
reactant	RpsD	protein
reactant	RpsE	protein
reactant	RpsF	protein
reactant	RpsG	protein
reactant	RpsH	protein
reactant	RpsI	protein
reactant	RpsJ	protein
reactant	RpsK	protein
reactant	RpsL	protein
reactant	RpsM	protein
reactant	RpsN	protein
reactant	RpsO	protein
reactant	RpsP	protein
reactant	RpsQ	protein
reactant	RpsR	protein
reactant	RpsS	protein
reactant	RpsT	protein
reactant	RpsU	protein
reactant	Sra	protein

Name:

ompC_mRNA -> OmpC

Description:

Translation of OmpC

Type:

translation

Pathway Components:

ompC_mRNA -> OmpC

Components:

Function	Name	Type
product	OmpC	protein
reactant	ompC_mRNA	RNA

Name:

hydrophilic solute or ion 600 Da_Ext -> hydrophilic solute or ion 600 Da

Description:

Transport of hydrophilic solute or ion 600 Da_Ext through a bacterial membrane, leading to the presence of hydrophilic solute or ion 600 Da inside the cell.

Type:

transport

Pathway Components:

hydrophilic solute or ion 600 Da_Ext - OmpC - OmpF -> hydrophilic solute or ion 600 Da

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	hydrophilic solute or ion 600 Da	simple_molecule
reactant	hydrophilic solute or ion 600 Da_Ext	simple_molecule

Name:

organophosphorus compound_Ext -> organophosphorus compound

Description:

Transport of organophosphorus compound_Ext through a bacterial membrane, leading to the presence of organophosphorus compound inside the cell.

Type:

transport

Pathway Components:

organophosphorus compound_Ext - OmpC - OmpF -> organophosphorus compound

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	organophosphorus compound	simple_molecule
reactant	organophosphorus compound_Ext	simple_molecule

Name:

MCFA_Ext -> MCFA

Description:

Transport of MCFA_Ext through a bacterial membrane, leading to the presence of MCFA inside the cell.

Type:

transport

Pathway Components:

MCFA_Ext - OmpC - OmpF -> MCFA

Components:

Function	Name	Type
product	MCFA	simple_molecule
reactant	MCFA_Ext	simple_molecule
catalyzer	OmpC	protein
catalyzer	OmpF	protein

Name:

caprate_Ext -> caprate

Description:

Transport of caprate_Ext through a bacterial membrane, leading to the presence of caprate inside the cell.

Type:

transport

Pathway Components:

caprate_Ext - OmpC - OmpF -> caprate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	caprate	simple_molecule
reactant	caprate_Ext	simple_molecule

Name:

glycoside_Ext -> glycoside

Description:

Transport of glycoside_Ext through a bacterial membrane, leading to the presence of glycoside inside the cell.

Type:

transport

Pathway Components:

glycoside_Ext - OmpC - OmpF -> glycoside

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	glycoside	simple_molecule
reactant	glycoside_Ext	simple_molecule

Name:

sugar_Ext -> sugar

Description:

Transport of sugar_Ext through a bacterial membrane, leading to the presence of sugar inside the cell.

Type:

transport

Pathway Components:

sugar_Ext - OmpC - OmpF -> sugar

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	sugar	simple_molecule
reactant	sugar_Ext	simple_molecule

Name:

beta-Neu5Ac_Ext -> beta-Neu5Ac

Description:

Transport of beta-Neu5Ac_Ext through a bacterial membrane, leading to the presence of beta-Neu5Ac inside the cell.

Type:

transport

Pathway Components:

beta-Neu5Ac_Ext - OmpC - OmpF -> beta-Neu5Ac

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	beta-Neu5Ac	simple_molecule
reactant	beta-Neu5Ac_Ext	simple_molecule

Name:

N-acetylneuraminate_Ext -> N-acetylneuraminate

Description:

Transport of N-acetylneuraminate_Ext through a bacterial membrane, leading to the presence of N-acetylneuraminate inside the cell.

Type:

transport

Pathway Components:

N-acetylneuraminate_Ext - OmpC - OmpF -> N-acetylneuraminate

Components:

Function	Name	Type
product	N-acetylneuraminate	simple_molecule
reactant	N-acetylneuraminate_Ext	simple_molecule
catalyzer	OmpC	protein
catalyzer	OmpF	protein

Name:

sugar phosphate_Ext -> sugar phosphate

Description:

Transport of sugar phosphate_Ext through a bacterial membrane, leading to the presence of sugar phosphate inside the cell.

Type:

transport

Pathway Components:

sugar phosphate_Ext - OmpC - OmpF -> sugar phosphate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	sugar phosphate	simple_molecule
reactant	sugar phosphate_Ext	simple_molecule

Name:

monocarboxylate_Ext -> monocarboxylate

Description:

Transport of monocarboxylate_Ext through a bacterial membrane, leading to the presence of monocarboxylate inside the cell.

Type:

transport

Pathway Components:

monocarboxylate_Ext - OmpC - OmpF -> monocarboxylate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	monocarboxylate	simple_molecule
reactant	monocarboxylate_Ext	simple_molecule

Name:

aromatic compound_Ext -> aromatic compound

Description:

Transport of aromatic compound_Ext through a bacterial membrane, leading to the presence of aromatic compound inside the cell.

Type:

transport

Pathway Components:

aromatic compound_Ext - OmpC - OmpF -> aromatic compound

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	aromatic compound	simple_molecule
reactant	aromatic compound_Ext	simple_molecule

Name:

enterobactin_Ext -> enterobactin

Description:

Transport of enterobactin_Ext through a bacterial membrane, leading to the presence of enterobactin inside the cell.

Type:

transport

Pathway Components:

enterobactin_Ext - OmpC - OmpF -> enterobactin

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	enterobactin	simple_molecule
reactant	enterobactin_Ext	simple_molecule

Name:

trisaccharide_Ext -> trisaccharide

Description:

Transport of trisaccharide_Ext through a bacterial membrane, leading to the presence of trisaccharide inside the cell.

Type:

transport

Pathway Components:

trisaccharide_Ext - OmpC - OmpF -> trisaccharide

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	trisaccharide	simple_molecule
reactant	trisaccharide_Ext	simple_molecule

Name:

disaccharide_Ext -> disaccharide

Description:

Transport of disaccharide_Ext through a bacterial membrane, leading to the presence of disaccharide inside the cell.

Type:

transport

Pathway Components:

disaccharide_Ext - OmpC - OmpF -> disaccharide

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	disaccharide	simple_molecule
reactant	disaccharide_Ext	simple_molecule

Name:

maltose_Ext -> maltose

Description:

Transport of maltose_Ext through a bacterial membrane, leading to the presence of maltose inside the cell.

Type:

transport

Pathway Components:

maltose_Ext - OmpC - OmpF -> maltose

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	maltose	simple_molecule
reactant	maltose_Ext	simple_molecule

Name:

chitobiose_Ext -> chitobiose

Description:

Transport of chitobiose_Ext through a bacterial membrane, leading to the presence of chitobiose inside the cell.

Type:

transport

Pathway Components:

chitobiose_Ext - OmpC - OmpF -> chitobiose

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	chitobiose	simple_molecule
reactant	chitobiose_Ext	simple_molecule

Name:

oligopeptide_Ext -> oligopeptide

Description:

Transport of oligopeptide_Ext through a bacterial membrane, leading to the presence of oligopeptide inside the cell.

Type:

transport

Pathway Components:

oligopeptide_Ext - OmpC - OmpF -> oligopeptide

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	oligopeptide	simple_molecule
reactant	oligopeptide_Ext	simple_molecule

Name:

nucleotide_Ext -> nucleotide

Description:

Transport of nucleotide_Ext through a bacterial membrane, leading to the presence of nucleotide inside the cell.

Type:

transport

Pathway Components:

nucleotide_Ext - OmpC - OmpF -> nucleotide

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	nucleotide	simple_molecule
reactant	nucleotide_Ext	simple_molecule

Name:

nucleotide sugar_Ext -> nucleotide sugar

Description:

Transport of nucleotide sugar_Ext through a bacterial membrane, leading to the presence of nucleotide sugar inside the cell.

Type:

transport

Pathway Components:

nucleotide sugar_Ext - OmpC - OmpF -> nucleotide sugar

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	nucleotide sugar	simple_molecule
reactant	nucleotide sugar_Ext	simple_molecule

Name:

nucleoside_Ext -> nucleoside

Description:

Transport of nucleoside_Ext through a bacterial membrane, leading to the presence of nucleoside inside the cell.

Type:

transport

Pathway Components:

nucleoside_Ext - OmpC - OmpF -> nucleoside

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	nucleoside	simple_molecule
reactant	nucleoside_Ext	simple_molecule

Name:

RCHO_Ext -> RCHO

Description:

Transport of RCHO_Ext through a bacterial membrane, leading to the presence of RCHO inside the cell.

Type:

transport

Pathway Components:

RCHO_Ext - OmpC - OmpF -> RCHO

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	RCHO	simple_molecule
reactant	RCHO_Ext	simple_molecule

Name:

lactone_Ext -> lactone

Description:

Transport of lactone_Ext through a bacterial membrane, leading to the presence of lactone inside the cell.

Type:

transport

Pathway Components:

lactone_Ext - OmpC - OmpF -> lactone

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	lactone	simple_molecule
reactant	lactone_Ext	simple_molecule

Name:

amide_Ext -> amide

Description:

Transport of amide_Ext through a bacterial membrane, leading to the presence of amide inside the cell.

Type:

transport

Pathway Components:

amide_Ext - OmpC - OmpF -> amide

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	amide	simple_molecule
reactant	amide_Ext	simple_molecule

Name:

amine_Ext -> amine

Description:

Transport of amine_Ext through a bacterial membrane, leading to the presence of amine inside the cell.

Type:

transport

Pathway Components:

amine_Ext - OmpC - OmpF -> amine

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	amine	simple_molecule
reactant	amine_Ext	simple_molecule

Name:

hydroxy carboxylate_Ext -> hydroxy carboxylate

Description:

Transport of hydroxy carboxylate_Ext through a bacterial membrane, leading to the presence of hydroxy carboxylate inside the cell.

Type:

transport

Pathway Components:

hydroxy carboxylate_Ext - OmpC - OmpF -> hydroxy carboxylate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	hydroxy carboxylate	simple_molecule
reactant	hydroxy carboxylate_Ext	simple_molecule

Name:

aldonate_Ext -> aldonate

Description:

Transport of aldonate_Ext through a bacterial membrane, leading to the presence of aldonate inside the cell.

Type:

transport

Pathway Components:

aldonate_Ext - OmpC - OmpF -> aldonate

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	aldonate	simple_molecule
reactant	aldonate_Ext	simple_molecule

Name:

betaine_Ext -> betaine

Description:

Transport of betaine_Ext through a bacterial membrane, leading to the presence of betaine inside the cell.

Type:

transport

Pathway Components:

betaine_Ext - OmpC - OmpF -> betaine

Components:

Function	Name	Type
catalyzer	OmpC	protein
catalyzer	OmpF	protein
product	betaine	simple_molecule
reactant	betaine_Ext	simple_molecule

Gensor Unit Map