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NhaR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
Sodium Sodium_Ext NhaA NhaR OsmC PgaA PgaB PgaC PgaD Udp UDP-GlcNAc acetate nhaAR nhaAR_mRNA osmC osmC_mRNA partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext pgaABCD pgaABCD_mRNA PGA PGA_Ext NhaR Sodium PgaD PgaC


Gensor Unit       
Name: NhaR
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0022891 - substrate-specific transmembrane transporter activity
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0003824 - catalytic activity
GO:0016020 - membrane
GO:0016491 - oxidoreductase activity
GO:0015081 - sodium ion transmembrane transporter activity
GO:0005737 - cytoplasm
GO:0005887 - integral component of plasma membrane
GO:0006811 - ion transport
GO:0006979 - response to oxidative stress
GO:0043708 - cell adhesion involved in biofilm formation
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Components:
Function Name Type
simple molecule PGA_Ext simple molecule


Reactions       
Showing 17 reactions
NhaR + Sodium NhaR-Sodium
Name: NhaR + Sodium -> NhaR-Sodium
Description: Reaction transforming NhaR, Sodium into NhaR-Sodium
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product NhaR-Sodium complex nd nd
reactant NhaR protein nd nd
reactant Sodium simple molecule nd nd
nhaAR nhaAR_mRNA
Name: nhaAR -> nhaAR_mRNA
Description: Transcription of transcription unit nhaAR; reaction activation by NhaR-Sodium.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product nhaAR_mRNA RNA nd nd
reactant nhaAR gene nd nd
osmC osmC_mRNA
Name: osmC -> osmC_mRNA
Description: Transcription of transcription unit osmC; reaction activation by NhaR-Sodium.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant osmC gene nd nd
product osmC_mRNA RNA nd nd
pgaABCD pgaABCD_mRNA
Name: pgaABCD -> pgaABCD_mRNA
Description: Transcription of transcription unit pgaABCD; reaction activation by NhaR-Sodium.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product pgaABCD_mRNA RNA nd nd
reactant pgaABCD gene nd nd
nhaAR_mRNA NhaA
Name: nhaAR_mRNA -> NhaA
Description: Translation of NhaA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant nhaAR_mRNA RNA nd nd
product NhaA protein nd nd
Sodium_Ext Sodium
Name: Sodium_Ext -> Sodium
Description: Transport of Sodium_Ext through a bacterial membrane, leading to the presence of Sodium inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product Sodium simple molecule nd nd
reactant Sodium_Ext simple molecule nd nd
pgaABCD_mRNA PgaA
Name: pgaABCD_mRNA -> PgaA
Description: Translation of PgaA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product PgaA protein nd nd
reactant pgaABCD_mRNA RNA nd nd
partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine
Name: partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext -> partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine
Description: Transport of partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext through a bacterial membrane, leading to the presence of partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine simple molecule nd nd
reactant partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine_Ext simple molecule nd nd
pgaABCD_mRNA PgaB
Name: pgaABCD_mRNA -> PgaB
Description: Translation of PgaB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product PgaB protein nd nd
reactant pgaABCD_mRNA RNA nd nd
PGA partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine + acetate
Name: PGA -> partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine + acetate
Description: Reaction transforming PGA into partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine, acetate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product acetate simple molecule nd nd
product partially N-deacetylated poly-beta-1,6-N-acetyl-D-glucosamine simple molecule nd nd
reactant PGA simple molecule nd nd
nhaAR_mRNA NhaR
Name: nhaAR_mRNA -> NhaR
Description: Translation of NhaR
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant nhaAR_mRNA RNA nd nd
product NhaR protein nd nd
osmC_mRNA OsmC
Name: osmC_mRNA -> OsmC
Description: Translation of OsmC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product OsmC protein nd nd
reactant osmC_mRNA RNA nd nd
pgaABCD_mRNA PgaC
Name: pgaABCD_mRNA -> PgaC
Description: Translation of PgaC
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant pgaABCD_mRNA RNA nd nd
product PgaC protein nd nd
PgaD + PgaC PgaD-PgaC
Name: PgaD + PgaC -> PgaD-PgaC
Description: Reaction transforming PgaD, PgaC into PgaD-PgaC
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant PgaD protein nd nd
product PgaD-PgaC complex nd nd
reactant PgaC protein nd nd
PGA_Ext PGA
Name: PGA_Ext -> PGA
Description: Transport of PGA_Ext through a bacterial membrane, leading to the presence of PGA inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant PGA_Ext simple molecule nd nd
product PGA simple molecule nd nd
UDP-GlcNAc PGA + UDP
Name: UDP-GlcNAc -> PGA + UDP
Description: Reaction transforming UDP-GlcNAc into PGA, UDP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product PGA simple molecule nd nd
product UDP simple molecule nd nd
reactant UDP-GlcNAc simple molecule nd nd
pgaABCD_mRNA PgaD
Name: pgaABCD_mRNA -> PgaD
Description: Translation of PgaD
Type: translation
Components:
Function Name Type Evidence Reference(s)
product PgaD protein nd nd
reactant pgaABCD_mRNA RNA nd nd



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