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NikR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
nickel nickel_Ext NikA NikB NikC NikD NikE NikR nikABCDER nikABCDER_mRNA phosphate NikR nickel NikD NikE NikB NikC NikA


Gensor Unit       
Name: NikR
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0043190 - ATP-binding cassette (ABC) transporter complex
GO:0015413 - nickel-transporting ATPase activity
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0016020 - membrane
GO:0035444 - nickel cation transmembrane transport
GO:0042597 - periplasmic space
GO:0016887 - ATPase activity
GO:0006811 - ion transport
GO:0016151 - nickel cation binding
GO:0003677 - DNA binding
GO:0050919 - negative chemotaxis
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Components:
Function Name Type
RNA nikABCDER_mRNA RNA


Reactions       
Showing 12 reactions
Cadmium + NikR NikR-Cadmium
Name: Cadmium + NikR -> NikR-Cadmium
Description: Reaction transforming Cadmium, NikR into NikR-Cadmium
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant Cadmium simple molecule nd nd
reactant NikR protein nd nd
product NikR-Cadmium complex nd nd
nikABCDER nikABCDER_mRNA
Name: nikABCDER -> nikABCDER_mRNA
Description: Transcription of transcription unit nikABCDER; reaction inhibition by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product nikABCDER_mRNA RNA nd nd
reactant nikABCDER gene nd nd
cobalt ion + NikR NikR-cobalt ion
Name: cobalt ion + NikR -> NikR-cobalt ion
Description: Reaction transforming cobalt ion, NikR into NikR-cobalt ion
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant cobalt ion simple molecule nd nd
reactant NikR protein nd nd
product NikR-cobalt ion complex nd nd
Cu(II) + NikR NikR-Cu(II)
Name: Cu(II) + NikR -> NikR-Cu(II)
Description: Reaction transforming Cu(II), NikR into NikR-Cu(II)
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product NikR-Cu(II) complex nd nd
reactant NikR protein nd nd
reactant Cu(II) simple molecule nd nd
nickel + NikR NikR-nickel
Name: nickel + NikR -> NikR-nickel
Description: Reaction transforming nickel, NikR into NikR-nickel
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product NikR-nickel complex nd nd
reactant NikR protein nd nd
reactant nickel simple molecule nd nd
Zinc + NikR NikR-Zinc
Name: Zinc + NikR -> NikR-Zinc
Description: Reaction transforming Zinc, NikR into NikR-Zinc
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant Zinc simple molecule nd nd
reactant NikR protein nd nd
product NikR-Zinc complex nd nd
nikABCDER_mRNA NikA
Name: nikABCDER_mRNA -> NikA
Description: Translation of NikA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant nikABCDER_mRNA RNA nd nd
product NikA protein nd nd
nikABCDER_mRNA NikB
Name: nikABCDER_mRNA -> NikB
Description: Translation of NikB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant nikABCDER_mRNA RNA nd nd
product NikB protein nd nd
nikABCDER_mRNA NikC
Name: nikABCDER_mRNA -> NikC
Description: Translation of NikC
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant nikABCDER_mRNA RNA nd nd
product NikC protein nd nd
nikABCDER_mRNA NikD
Name: nikABCDER_mRNA -> NikD
Description: Translation of NikD
Type: translation
Components:
Function Name Type Evidence Reference(s)
product NikD protein nd nd
reactant nikABCDER_mRNA RNA nd nd
nikABCDER_mRNA NikE
Name: nikABCDER_mRNA -> NikE
Description: Translation of NikE
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant nikABCDER_mRNA RNA nd nd
product NikE protein nd nd
nikABCDER_mRNA NikR
Name: nikABCDER_mRNA -> NikR
Description: Translation of NikR
Type: translation
Components:
Function Name Type Evidence Reference(s)
product NikR protein nd nd
reactant nikABCDER_mRNA RNA nd nd



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