RegulonDB RegulonDB

NarP Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
ubiquinol HyaD CcmF NarP nrfABCDEFG_mRNA hcp-hcr_mRNA PoxB HycE acetoin hcp-hcr-poxB_mRNA NapH HyaF NrfC NrfA HyaB protoheme IX_Ext a-reduced-NrfB-protein CcmE NapG SAM vitamin K2 NapB acceptors CysG NrfE ubiquinone Reduced-NapC-proteins yeaR-yoaG hydrogen NrfB norVW_mRNA NirD nrfABCDEFG reduced hydrogenase 3 an-oxidized-NrfB-protein CcmH hcp-hcr-poxB YdhU CcmE ydhYVWXUT HycF YdhV fdnGHI HycB ammonium reduced hybrid-cluster protein HycB protoheme IX ytfE_mRNA HyaA HycF FdhF ferri c-type cytochrome CcmC menaquinol uroporphyrinogen-III YoaG NrfD CcmC NapA Precorrin NapD NapC CcmG NrfB YdeP Oxidized-NapC-proteins FdnI NH2OH NrfA nitrite_Ext HyaB NorW phosphate acetate HycE fdhF NrfC CcmH fdnGHI_mRNA CcmB NapH oxidized flavorubredoxin NapF Hcr HyaA NapG pyruvate FdnG NirB YtfE CcmA FdnI ethanal reduced Cytochrome C protein NorV HycG HycG HycC precorrin-2 YdhY NirD ydhYVWXUT_mRNA oxidized hydrogenase 3 CcmD CcmD ydeP_mRNA NapA CcmE CcmB FdhF oxidized hybrid-cluster protein CcmF napFDAGHBC-ccmABCDEFGH ytfE A(H2) yeaR-yoaG_mRNA CcmG CcmA NrfD NirB YdhW nirBDC-cysG_mRNA hyaABCDEF_mRNA hyaABCDEF HyaC siroheme fdhF_mRNA HycD NapB napFDAGHBC-ccmABCDEFGH_mRNA hcp-hcr HyaC FdnG YeaR FdnH Fe+2 YdhX precorrin-1 NrfG formate CO2 NrfF HycD ydeP Hcp HyaE phosphate FdnH adenosylhomocysteine nitrite HycC NarP NirC YdhT nirBDC-cysG norVW FlRd ammonium nitrite nitrate CO2


Gensor Unit       
Name: NarP
Signal name: Nitrate
Nitrite.
Classification:
Groups: General function prediction only
Lipid transport and metabolism
Inorganic ion transport and metabolism
Posttranslational modification, protein turnover, chaperones
Energy production and conversion
Coenzyme transport and metabolism
Intracellular trafficking, secretion, and vesicular transport
Gene Ontology Terms (GO): biological_process GO:0019645 - anaerobic electron transport chain
GO:0009061 - anaerobic respiration
GO:0045454 - cell redox homeostasis
GO:0098869 - cellular oxidant detoxification
GO:0006464 - cellular protein modification process
GO:0045333 - cellular respiration
Read more >
cellular_component GO:0043190 - ATP-binding cassette (ABC) transporter complex
GO:0044569 - [Ni-Fe] hydrogenase complex
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane
GO:0009375 - ferredoxin hydrogenase complex
GO:0009326 - formate dehydrogenase complex
Read more >
molecular_function GO:0051537 - 2 iron, 2 sulfur cluster binding
GO:0051538 - 3 iron, 4 sulfur cluster binding
GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0005524 - ATP binding
GO:0016887 - ATPase activity
GO:0042623 - ATPase activity, coupled
GO:0015439 - ATPase-coupled heme transmembrane transporter activity
Read more >
Components:
  Function Name Type
  simple_molecule A(H2) simple_molecule
  simple_molecule CO2 simple_molecule
  protein CcmA protein
  protein CcmB protein
  protein CcmC protein
  protein CcmD protein
  complex CcmD-CcmB-CcmA-CcmE-CcmC complex
  protein CcmE protein
  complex CcmE-CcmF-CcmG-CcmH complex
  protein CcmF protein
  protein CcmG protein
  protein CcmH protein
  protein CysG protein
  protein FdhF protein
  complex FdhF-HycE-HycB-HycG-HycF-HycC-HycD complex
  protein FdnG protein
  protein FdnH protein
  protein FdnI protein
  complex FdnI-FdnH-FdnG complex
  simple_molecule Fe+2 simple_molecule
  simple_molecule FlRd simple_molecule
  protein Hcp protein
  protein Hcr protein
  protein HyaA protein
  complex HyaA-HyaB-HyaC complex
  protein HyaB protein
  protein HyaC protein
  protein HyaD protein
  protein HyaE protein
  protein HyaF protein
  protein HycB protein
  protein HycC protein
  protein HycD protein
  protein HycE protein
  protein HycF protein
  protein HycG protein
  simple_molecule NH2OH simple_molecule
  protein NapA protein
  protein NapB protein
  complex NapB-NapA complex
  protein NapC protein
  protein NapD protein
  protein NapF protein
  protein NapG protein
  complex NapG-NapH complex
  protein NapH protein
  protein NarP protein
  complex NarP-phosphate complex
  protein NirB protein
  protein NirC protein
  protein NirD protein
  complex NirD-NirB complex
  protein NorV protein
  protein NorW protein
  protein NrfA protein
  complex NrfA-NrfB complex
  protein NrfB protein
  protein NrfC protein
  protein NrfD protein
  complex NrfD-NrfC complex
  protein NrfE protein
  protein NrfF protein
  protein NrfG protein
  simple_molecule Oxidized-NapC-proteins simple_molecule
  protein PoxB protein
  simple_molecule Precorrin simple_molecule
  simple_molecule Reduced-NapC-proteins simple_molecule
  simple_molecule SAM simple_molecule
  protein YdeP protein
  protein YdhT protein
  protein YdhU protein
  protein YdhV protein
  protein YdhW protein
  protein YdhX protein
  protein YdhY protein
  protein YeaR protein
  protein YoaG protein
  protein YtfE protein
  simple_molecule a-reduced-NrfB-protein simple_molecule
  simple_molecule acceptors simple_molecule
  simple_molecule acetate simple_molecule
  simple_molecule acetoin simple_molecule
  simple_molecule adenosylhomocysteine simple_molecule
  simple_molecule ammonium simple_molecule
  simple_molecule an-oxidized-NrfB-protein simple_molecule
  simple_molecule ethanal simple_molecule
  gene fdhF gene
  RNA fdhF_mRNA RNA
  gene fdnGHI gene
  RNA fdnGHI_mRNA RNA
  simple_molecule ferri c-type cytochrome simple_molecule
  simple_molecule formate simple_molecule
  gene hcp-hcr gene
  gene hcp-hcr-poxB gene
  RNA hcp-hcr-poxB_mRNA RNA
  RNA hcp-hcr_mRNA RNA
  gene hyaABCDEF gene
  RNA hyaABCDEF_mRNA RNA
  simple_molecule hydrogen simple_molecule
  simple_molecule menaquinol simple_molecule
  gene napFDAGHBC-ccmABCDEFGH gene
  RNA napFDAGHBC-ccmABCDEFGH_mRNA RNA
  gene nirBDC-cysG gene
  RNA nirBDC-cysG_mRNA RNA
  simple_molecule nitrate simple_molecule
  simple_molecule nitrite simple_molecule
  simple_molecule nitrite_Ext simple_molecule
  gene norVW gene
  RNA norVW_mRNA RNA
  gene nrfABCDEFG gene
  RNA nrfABCDEFG_mRNA RNA
  simple_molecule oxidized flavorubredoxin simple_molecule
  simple_molecule oxidized hybrid-cluster protein simple_molecule
  simple_molecule oxidized hydrogenase 3 simple_molecule
  simple_molecule phosphate simple_molecule
  simple_molecule precorrin-1 simple_molecule
  simple_molecule precorrin-2 simple_molecule
  simple_molecule protoheme IX simple_molecule
  simple_molecule protoheme IX_Ext simple_molecule
  simple_molecule pyruvate simple_molecule
  simple_molecule reduced Cytochrome C protein simple_molecule
  simple_molecule reduced hybrid-cluster protein simple_molecule
  simple_molecule reduced hydrogenase 3 simple_molecule
  simple_molecule siroheme simple_molecule
  simple_molecule ubiquinol simple_molecule
  simple_molecule ubiquinone simple_molecule
  simple_molecule uroporphyrinogen-III simple_molecule
  simple_molecule vitamin K2 simple_molecule
  gene ydeP gene
  RNA ydeP_mRNA RNA
  gene ydhYVWXUT gene
  RNA ydhYVWXUT_mRNA RNA
  gene yeaR-yoaG gene
  RNA yeaR-yoaG_mRNA RNA
  gene ytfE gene
  RNA ytfE_mRNA RNA


Reactions       
Showing 99 reactions
phosphate + NarP NarP-phosphate
Name: phosphate + NarP -> NarP-phosphate
Description: Reaction transforming phosphate, NarP into NarP-phosphate
Type: state transition
Pathway Components: phosphate + NarP -> NarP-phosphate
Components:
Function Name Type
reactant NarP protein
product NarP-phosphate complex
reactant phosphate simple_molecule
NarP-phosphate fdhF fdhF_mRNA
Name: fdhF -> fdhF_mRNA
Description: Transcription of transcription unit fdhF. Reaction activation by NarP-phosphate.
Type: transcription
Pathway Components: fdhF - NarP-phosphate -> fdhF_mRNA
Components:
Function Name Type
activator NarP-phosphate complex
reactant fdhF gene
product fdhF_mRNA RNA
NarP-phosphate hcp-hcr hcp-hcr_mRNA
Name: hcp-hcr -> hcp-hcr_mRNA
Description: Transcription of transcription unit hcp-hcr. Reaction activation by NarP-phosphate.
Type: transcription
Pathway Components: hcp-hcr - NarP-phosphate -> hcp-hcr_mRNA
Components:
Function Name Type
activator NarP-phosphate complex
reactant hcp-hcr gene
product hcp-hcr_mRNA RNA
NarP-phosphate hcp-hcr-poxB hcp-hcr-poxB_mRNA
Name: hcp-hcr-poxB -> hcp-hcr-poxB_mRNA
Description: Transcription of transcription unit hcp-hcr-poxB. Reaction activation by NarP-phosphate.
Type: transcription
Pathway Components: hcp-hcr-poxB - NarP-phosphate -> hcp-hcr-poxB_mRNA
Components:
Function Name Type
activator NarP-phosphate complex
reactant hcp-hcr-poxB gene
product hcp-hcr-poxB_mRNA RNA
NarP-phosphate NarP-phosphate napFDAGHBC-ccmABCDEFGH napFDAGHBC-ccmABCDEFGH_mRNA
Name: napFDAGHBC-ccmABCDEFGH -> napFDAGHBC-ccmABCDEFGH_mRNA
Description: Transcription of transcription unit napFDAGHBC-ccmABCDEFGH. Reaction activation by NarP-phosphate. Reaction inhibition by NarP-phosphate.
Type: transcription
Pathway Components: napFDAGHBC-ccmABCDEFGH - NarP-phosphate - NarP-phosphate -> napFDAGHBC-ccmABCDEFGH_mRNA
Components:
Function Name Type
activator NarP-phosphate complex
inhibitor NarP-phosphate complex
reactant napFDAGHBC-ccmABCDEFGH gene
product napFDAGHBC-ccmABCDEFGH_mRNA RNA
NarP-phosphate nirBDC-cysG nirBDC-cysG_mRNA
Name: nirBDC-cysG -> nirBDC-cysG_mRNA
Description: Transcription of transcription unit nirBDC-cysG. Reaction activation by NarP-phosphate.
Type: transcription
Pathway Components: nirBDC-cysG - NarP-phosphate -> nirBDC-cysG_mRNA
Components:
Function Name Type
activator NarP-phosphate complex
reactant nirBDC-cysG gene
product nirBDC-cysG_mRNA RNA
NarP-phosphate nrfABCDEFG nrfABCDEFG_mRNA
Name: nrfABCDEFG -> nrfABCDEFG_mRNA
Description: Transcription of transcription unit nrfABCDEFG. Reaction activation by NarP-phosphate.
Type: transcription
Pathway Components: nrfABCDEFG - NarP-phosphate -> nrfABCDEFG_mRNA
Components:
Function Name Type
activator NarP-phosphate complex
reactant nrfABCDEFG gene
product nrfABCDEFG_mRNA RNA
NarP-phosphate yeaR-yoaG yeaR-yoaG_mRNA
Name: yeaR-yoaG -> yeaR-yoaG_mRNA
Description: Transcription of transcription unit yeaR-yoaG. Reaction activation by NarP-phosphate.
Type: transcription
Pathway Components: yeaR-yoaG - NarP-phosphate -> yeaR-yoaG_mRNA
Components:
Function Name Type
activator NarP-phosphate complex
reactant yeaR-yoaG gene
product yeaR-yoaG_mRNA RNA
NarP-phosphate ytfE ytfE_mRNA
Name: ytfE -> ytfE_mRNA
Description: Transcription of transcription unit ytfE. Reaction activation by NarP-phosphate.
Type: transcription
Pathway Components: ytfE - NarP-phosphate -> ytfE_mRNA
Components:
Function Name Type
activator NarP-phosphate complex
reactant ytfE gene
product ytfE_mRNA RNA
NarP-phosphate fdnGHI fdnGHI_mRNA
Name: fdnGHI -> fdnGHI_mRNA
Description: Transcription of transcription unit fdnGHI. Reaction inhibition by NarP-phosphate.
Type: transcription
Pathway Components: fdnGHI - NarP-phosphate -> fdnGHI_mRNA
Components:
Function Name Type
inhibitor NarP-phosphate complex
reactant fdnGHI gene
product fdnGHI_mRNA RNA
NarP-phosphate hyaABCDEF hyaABCDEF_mRNA
Name: hyaABCDEF -> hyaABCDEF_mRNA
Description: Transcription of transcription unit hyaABCDEF. Reaction inhibition by NarP-phosphate.
Type: transcription
Pathway Components: hyaABCDEF - NarP-phosphate -> hyaABCDEF_mRNA
Components:
Function Name Type
inhibitor NarP-phosphate complex
reactant hyaABCDEF gene
product hyaABCDEF_mRNA RNA
NarP-phosphate norVW norVW_mRNA
Name: norVW -> norVW_mRNA
Description: Transcription of transcription unit norVW. Reaction inhibition by NarP-phosphate.
Type: transcription
Pathway Components: norVW - NarP-phosphate -> norVW_mRNA
Components:
Function Name Type
inhibitor NarP-phosphate complex
reactant norVW gene
product norVW_mRNA RNA
NarP-phosphate ydeP ydeP_mRNA
Name: ydeP -> ydeP_mRNA
Description: Transcription of transcription unit ydeP. Reaction inhibition by NarP-phosphate.
Type: transcription
Pathway Components: ydeP - NarP-phosphate -> ydeP_mRNA
Components:
Function Name Type
inhibitor NarP-phosphate complex
reactant ydeP gene
product ydeP_mRNA RNA
NarP-phosphate ydhYVWXUT ydhYVWXUT_mRNA
Name: ydhYVWXUT -> ydhYVWXUT_mRNA
Description: Transcription of transcription unit ydhYVWXUT. Reaction inhibition by NarP-phosphate.
Type: transcription
Pathway Components: ydhYVWXUT - NarP-phosphate -> ydhYVWXUT_mRNA
Components:
Function Name Type
inhibitor NarP-phosphate complex
reactant ydhYVWXUT gene
product ydhYVWXUT_mRNA RNA
nirBDC-cysG_mRNA NirB
Name: nirBDC-cysG_mRNA -> NirB
Description: Translation of NirB
Type: translation
Pathway Components: nirBDC-cysG_mRNA -> NirB
Components:
Function Name Type
product NirB protein
reactant nirBDC-cysG_mRNA RNA
NirB + NirD NirD-NirB
Name: NirB + NirD -> NirD-NirB
Description: Reaction transforming NirB, NirD into NirD-NirB
Type: state transition
Pathway Components: NirB + NirD -> NirD-NirB
Components:
Function Name Type
reactant NirB protein
reactant NirD protein
product NirD-NirB complex
NirD-NirB nitrite ammonium
Name: nitrite -> ammonium
Description: Reaction transforming nitrite into ammonium
Type: state transition
Pathway Components: nitrite - NirD-NirB -> ammonium
Components:
Function Name Type
catalyzer NirD-NirB complex
product ammonium simple_molecule
reactant nitrite simple_molecule
nirBDC-cysG_mRNA NirD
Name: nirBDC-cysG_mRNA -> NirD
Description: Translation of NirD
Type: translation
Pathway Components: nirBDC-cysG_mRNA -> NirD
Components:
Function Name Type
product NirD protein
reactant nirBDC-cysG_mRNA RNA
nirBDC-cysG_mRNA NirC
Name: nirBDC-cysG_mRNA -> NirC
Description: Translation of NirC
Type: translation
Pathway Components: nirBDC-cysG_mRNA -> NirC
Components:
Function Name Type
product NirC protein
reactant nirBDC-cysG_mRNA RNA
NirC nitrite_Ext nitrite
Name: nitrite_Ext -> nitrite
Description: Transport of nitrite_Ext through a bacterial membrane, leading to the presence of nitrite inside the cell.
Type: transport
Pathway Components: nitrite_Ext - NirC -> nitrite
Components:
Function Name Type
catalyzer NirC protein
product nitrite simple_molecule
reactant nitrite_Ext simple_molecule
nirBDC-cysG_mRNA CysG
Name: nirBDC-cysG_mRNA -> CysG
Description: Translation of CysG
Type: translation
Pathway Components: nirBDC-cysG_mRNA -> CysG
Components:
Function Name Type
product CysG protein
reactant nirBDC-cysG_mRNA RNA
CysG uroporphyrinogen-III + SAM adenosylhomocysteine + precorrin-2
Name: uroporphyrinogen-III + SAM -> adenosylhomocysteine + precorrin-2
Description: Reaction transforming uroporphyrinogen-III, SAM into adenosylhomocysteine, precorrin-2
Type: state transition
Pathway Components: uroporphyrinogen-III + SAM - CysG -> adenosylhomocysteine + precorrin-2
Components:
Function Name Type
catalyzer CysG protein
reactant SAM simple_molecule
product adenosylhomocysteine simple_molecule
product precorrin-2 simple_molecule
reactant uroporphyrinogen-III simple_molecule
CysG precorrin-1 + SAM adenosylhomocysteine + precorrin-2
Name: precorrin-1 + SAM -> adenosylhomocysteine + precorrin-2
Description: Reaction transforming precorrin-1, SAM into adenosylhomocysteine, precorrin-2
Type: state transition
Pathway Components: precorrin-1 + SAM - CysG -> adenosylhomocysteine + precorrin-2
Components:
Function Name Type
catalyzer CysG protein
reactant SAM simple_molecule
product adenosylhomocysteine simple_molecule
reactant precorrin-1 simple_molecule
product precorrin-2 simple_molecule
CysG uroporphyrinogen-III + SAM adenosylhomocysteine + precorrin-1
Name: uroporphyrinogen-III + SAM -> adenosylhomocysteine + precorrin-1
Description: Reaction transforming uroporphyrinogen-III, SAM into adenosylhomocysteine, precorrin-1
Type: state transition
Pathway Components: uroporphyrinogen-III + SAM - CysG -> adenosylhomocysteine + precorrin-1
Components:
Function Name Type
catalyzer CysG protein
reactant SAM simple_molecule
product adenosylhomocysteine simple_molecule
product precorrin-1 simple_molecule
reactant uroporphyrinogen-III simple_molecule
CysG precorrin-2 Precorrin
Name: precorrin-2 -> Precorrin
Description: Reaction transforming precorrin-2 into Precorrin
Type: state transition
Pathway Components: precorrin-2 - CysG -> Precorrin
Components:
Function Name Type
catalyzer CysG protein
product Precorrin simple_molecule
reactant precorrin-2 simple_molecule
CysG Precorrin + Fe+2 siroheme
Name: Precorrin + Fe+2 -> siroheme
Description: Reaction transforming Precorrin, Fe+2 into siroheme
Type: state transition
Pathway Components: Precorrin + Fe+2 - CysG -> siroheme
Components:
Function Name Type
catalyzer CysG protein
reactant Fe+2 simple_molecule
reactant Precorrin simple_molecule
product siroheme simple_molecule
ydeP_mRNA YdeP
Name: ydeP_mRNA -> YdeP
Description: Translation of YdeP
Type: translation
Pathway Components: ydeP_mRNA -> YdeP
Components:
Function Name Type
product YdeP protein
reactant ydeP_mRNA RNA
ydhYVWXUT_mRNA YdhY
Name: ydhYVWXUT_mRNA -> YdhY
Description: Translation of YdhY
Type: translation
Pathway Components: ydhYVWXUT_mRNA -> YdhY
Components:
Function Name Type
product YdhY protein
reactant ydhYVWXUT_mRNA RNA
ydhYVWXUT_mRNA YdhV
Name: ydhYVWXUT_mRNA -> YdhV
Description: Translation of YdhV
Type: translation
Pathway Components: ydhYVWXUT_mRNA -> YdhV
Components:
Function Name Type
product YdhV protein
reactant ydhYVWXUT_mRNA RNA
ydhYVWXUT_mRNA YdhW
Name: ydhYVWXUT_mRNA -> YdhW
Description: Translation of YdhW
Type: translation
Pathway Components: ydhYVWXUT_mRNA -> YdhW
Components:
Function Name Type
product YdhW protein
reactant ydhYVWXUT_mRNA RNA
ydhYVWXUT_mRNA YdhX
Name: ydhYVWXUT_mRNA -> YdhX
Description: Translation of YdhX
Type: translation
Pathway Components: ydhYVWXUT_mRNA -> YdhX
Components:
Function Name Type
product YdhX protein
reactant ydhYVWXUT_mRNA RNA
ydhYVWXUT_mRNA YdhU
Name: ydhYVWXUT_mRNA -> YdhU
Description: Translation of YdhU
Type: translation
Pathway Components: ydhYVWXUT_mRNA -> YdhU
Components:
Function Name Type
product YdhU protein
reactant ydhYVWXUT_mRNA RNA
ydhYVWXUT_mRNA YdhT
Name: ydhYVWXUT_mRNA -> YdhT
Description: Translation of YdhT
Type: translation
Pathway Components: ydhYVWXUT_mRNA -> YdhT
Components:
Function Name Type
product YdhT protein
reactant ydhYVWXUT_mRNA RNA
hyaABCDEF_mRNA HyaA
Name: hyaABCDEF_mRNA -> HyaA
Description: Translation of HyaA
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaA
Components:
Function Name Type
product HyaA protein
reactant hyaABCDEF_mRNA RNA
HyaB + HyaA + HyaC HyaA-HyaB-HyaC
Name: HyaB + HyaA + HyaC -> HyaA-HyaB-HyaC
Description: Reaction transforming HyaB, HyaA, HyaC into HyaA-HyaB-HyaC
Type: state transition
Pathway Components: HyaB + HyaA + HyaC -> HyaA-HyaB-HyaC
Components:
Function Name Type
reactant HyaA protein
product HyaA-HyaB-HyaC complex
reactant HyaB protein
reactant HyaC protein
hyaABCDEF_mRNA HyaB
Name: hyaABCDEF_mRNA -> HyaB
Description: Translation of HyaB
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaB
Components:
Function Name Type
product HyaB protein
reactant hyaABCDEF_mRNA RNA
hyaABCDEF_mRNA HyaC
Name: hyaABCDEF_mRNA -> HyaC
Description: Translation of HyaC
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaC
Components:
Function Name Type
product HyaC protein
reactant hyaABCDEF_mRNA RNA
hyaABCDEF_mRNA HyaD
Name: hyaABCDEF_mRNA -> HyaD
Description: Translation of HyaD
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaD
Components:
Function Name Type
product HyaD protein
reactant hyaABCDEF_mRNA RNA
hyaABCDEF_mRNA HyaE
Name: hyaABCDEF_mRNA -> HyaE
Description: Translation of HyaE
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaE
Components:
Function Name Type
product HyaE protein
reactant hyaABCDEF_mRNA RNA
hyaABCDEF_mRNA HyaF
Name: hyaABCDEF_mRNA -> HyaF
Description: Translation of HyaF
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaF
Components:
Function Name Type
product HyaF protein
reactant hyaABCDEF_mRNA RNA
yeaR-yoaG_mRNA YeaR
Name: yeaR-yoaG_mRNA -> YeaR
Description: Translation of YeaR
Type: translation
Pathway Components: yeaR-yoaG_mRNA -> YeaR
Components:
Function Name Type
product YeaR protein
reactant yeaR-yoaG_mRNA RNA
yeaR-yoaG_mRNA YoaG
Name: yeaR-yoaG_mRNA -> YoaG
Description: Translation of YoaG
Type: translation
Pathway Components: yeaR-yoaG_mRNA -> YoaG
Components:
Function Name Type
product YoaG protein
reactant yeaR-yoaG_mRNA RNA
fdhF_mRNA FdhF
Name: fdhF_mRNA -> FdhF
Description: Translation of FdhF
Type: translation
Pathway Components: fdhF_mRNA -> FdhF
Components:
Function Name Type
product FdhF protein
reactant fdhF_mRNA RNA
HycC + HycB + FdhF + HycG + HycF + HycD + HycE FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Name: HycC + HycB + FdhF + HycG + HycF + HycD + HycE -> FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Description: Reaction transforming HycC, HycB, FdhF, HycG, HycF, HycD, HycE into FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Type: state transition
Pathway Components: HycC + HycB + FdhF + HycG + HycF + HycD + HycE -> FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Components:
Function Name Type
reactant FdhF protein
product FdhF-HycE-HycB-HycG-HycF-HycC-HycD complex
reactant HycB protein
reactant HycC protein
reactant HycD protein
reactant HycE protein
reactant HycF protein
reactant HycG protein
FdhF-HycE-HycB-HycG-HycF-HycC-HycD formate hydrogen + CO2
Name: formate -> hydrogen + CO2
Description: Reaction transforming formate into hydrogen, CO2
Type: state transition
Pathway Components: formate - FdhF-HycE-HycB-HycG-HycF-HycC-HycD -> hydrogen + CO2
Components:
Function Name Type
product CO2 simple_molecule
catalyzer FdhF-HycE-HycB-HycG-HycF-HycC-HycD complex
reactant formate simple_molecule
product hydrogen simple_molecule
FdhF oxidized hydrogenase 3 + formate reduced hydrogenase 3 + CO2
Name: oxidized hydrogenase 3 + formate -> reduced hydrogenase 3 + CO2
Description: Reaction transforming oxidized hydrogenase 3, formate into reduced hydrogenase 3, CO2
Type: state transition
Pathway Components: oxidized hydrogenase 3 + formate - FdhF -> reduced hydrogenase 3 + CO2
Components:
Function Name Type
product CO2 simple_molecule
catalyzer FdhF protein
reactant formate simple_molecule
reactant oxidized hydrogenase 3 simple_molecule
product reduced hydrogenase 3 simple_molecule
FdhF nitrate nitrite acceptors + formate A(H2) + CO2
Name: acceptors + formate -> A(H2) + CO2
Description: Reaction transforming acceptors, formate into A(H2), CO2
Type: state transition
Pathway Components: acceptors + formate - FdhF - nitrate - nitrite -> A(H2) + CO2
Components:
Function Name Type
product A(H2) simple_molecule
product CO2 simple_molecule
catalyzer FdhF protein
reactant acceptors simple_molecule
reactant formate simple_molecule
inhibitor nitrate simple_molecule
inhibitor nitrite simple_molecule
hcp-hcr_mRNA Hcp
Name: hcp-hcr_mRNA -> Hcp
Description: Translation of Hcp
Type: translation
Pathway Components: hcp-hcr_mRNA -> Hcp
Components:
Function Name Type
product Hcp protein
reactant hcp-hcr_mRNA RNA
Hcp NH2OH + A(H2) acceptors + ammonium
Name: NH2OH + A(H2) -> acceptors + ammonium
Description: Reaction transforming NH2OH, A(H2) into acceptors, ammonium
Type: state transition
Pathway Components: NH2OH + A(H2) - Hcp -> acceptors + ammonium
Components:
Function Name Type
reactant A(H2) simple_molecule
catalyzer Hcp protein
reactant NH2OH simple_molecule
product acceptors simple_molecule
product ammonium simple_molecule
hcp-hcr_mRNA Hcr
Name: hcp-hcr_mRNA -> Hcr
Description: Translation of Hcr
Type: translation
Pathway Components: hcp-hcr_mRNA -> Hcr
Components:
Function Name Type
product Hcr protein
reactant hcp-hcr_mRNA RNA
Hcr oxidized hybrid-cluster protein reduced hybrid-cluster protein
Name: oxidized hybrid-cluster protein -> reduced hybrid-cluster protein
Description: Reaction transforming oxidized hybrid-cluster protein into reduced hybrid-cluster protein
Type: state transition
Pathway Components: oxidized hybrid-cluster protein - Hcr -> reduced hybrid-cluster protein
Components:
Function Name Type
catalyzer Hcr protein
reactant oxidized hybrid-cluster protein simple_molecule
product reduced hybrid-cluster protein simple_molecule
norVW_mRNA NorV
Name: norVW_mRNA -> NorV
Description: Translation of NorV
Type: translation
Pathway Components: norVW_mRNA -> NorV
Components:
Function Name Type
product NorV protein
reactant norVW_mRNA RNA
norVW_mRNA FlRd
Name: norVW_mRNA -> FlRd
Description: Translation of FlRd
Type: translation
Pathway Components: norVW_mRNA -> FlRd
Components:
Function Name Type
product FlRd simple_molecule
reactant norVW_mRNA RNA
norVW_mRNA NorW
Name: norVW_mRNA -> NorW
Description: Translation of NorW
Type: translation
Pathway Components: norVW_mRNA -> NorW
Components:
Function Name Type
product NorW protein
reactant norVW_mRNA RNA
NorW oxidized flavorubredoxin FlRd
Name: oxidized flavorubredoxin -> FlRd
Description: Reaction transforming oxidized flavorubredoxin into FlRd
Type: state transition
Pathway Components: oxidized flavorubredoxin - NorW -> FlRd
Components:
Function Name Type
product FlRd simple_molecule
catalyzer NorW protein
reactant oxidized flavorubredoxin simple_molecule
ytfE_mRNA YtfE
Name: ytfE_mRNA -> YtfE
Description: Translation of YtfE
Type: translation
Pathway Components: ytfE_mRNA -> YtfE
Components:
Function Name Type
product YtfE protein
reactant ytfE_mRNA RNA
fdnGHI_mRNA FdnG
Name: fdnGHI_mRNA -> FdnG
Description: Translation of FdnG
Type: translation
Pathway Components: fdnGHI_mRNA -> FdnG
Components:
Function Name Type
product FdnG protein
reactant fdnGHI_mRNA RNA
FdnG + FdnI + FdnH FdnI-FdnH-FdnG
Name: FdnG + FdnI + FdnH -> FdnI-FdnH-FdnG
Description: Reaction transforming FdnG, FdnI, FdnH into FdnI-FdnH-FdnG
Type: state transition
Pathway Components: FdnG + FdnI + FdnH -> FdnI-FdnH-FdnG
Components:
Function Name Type
reactant FdnG protein
reactant FdnH protein
reactant FdnI protein
product FdnI-FdnH-FdnG complex
fdnGHI_mRNA FdnH
Name: fdnGHI_mRNA -> FdnH
Description: Translation of FdnH
Type: translation
Pathway Components: fdnGHI_mRNA -> FdnH
Components:
Function Name Type
product FdnH protein
reactant fdnGHI_mRNA RNA
fdnGHI_mRNA FdnI
Name: fdnGHI_mRNA -> FdnI
Description: Translation of FdnI
Type: translation
Pathway Components: fdnGHI_mRNA -> FdnI
Components:
Function Name Type
product FdnI protein
reactant fdnGHI_mRNA RNA