RegulonDB

Name:

fdhF -> fdhF_mRNA

Description:

Transcription of transcription unit fdhF. Reaction activation by NarP-phosphate.

Type:

transcription

Pathway Components:

fdhF - NarP-phosphate -> fdhF_mRNA

Components:

Function	Name	Type
activator	NarP-phosphate	complex
reactant	fdhF	gene
product	fdhF_mRNA	RNA

Name:

hcp-hcr -> hcp-hcr_mRNA

Description:

Transcription of transcription unit hcp-hcr. Reaction activation by NarP-phosphate.

Type:

transcription

Pathway Components:

hcp-hcr - NarP-phosphate -> hcp-hcr_mRNA

Components:

Function	Name	Type
activator	NarP-phosphate	complex
reactant	hcp-hcr	gene
product	hcp-hcr_mRNA	RNA

Name:

hcp-hcr-poxB -> hcp-hcr-poxB_mRNA

Description:

Transcription of transcription unit hcp-hcr-poxB. Reaction activation by NarP-phosphate.

Type:

transcription

Pathway Components:

hcp-hcr-poxB - NarP-phosphate -> hcp-hcr-poxB_mRNA

Components:

Function	Name	Type
activator	NarP-phosphate	complex
reactant	hcp-hcr-poxB	gene
product	hcp-hcr-poxB_mRNA	RNA

Name:

napFDAGHBC-ccmABCDEFGH -> napFDAGHBC-ccmABCDEFGH_mRNA

Description:

Transcription of transcription unit napFDAGHBC-ccmABCDEFGH. Reaction activation by NarP-phosphate. Reaction inhibition by NarP-phosphate.

Type:

transcription

Pathway Components:

napFDAGHBC-ccmABCDEFGH - NarP-phosphate - NarP-phosphate -> napFDAGHBC-ccmABCDEFGH_mRNA

Components:

Function	Name	Type
activator	NarP-phosphate	complex
inhibitor	NarP-phosphate	complex
reactant	napFDAGHBC-ccmABCDEFGH	gene
product	napFDAGHBC-ccmABCDEFGH_mRNA	RNA

Name:

nirBDC-cysG -> nirBDC-cysG_mRNA

Description:

Transcription of transcription unit nirBDC-cysG. Reaction activation by NarP-phosphate.

Type:

transcription

Pathway Components:

nirBDC-cysG - NarP-phosphate -> nirBDC-cysG_mRNA

Components:

Function	Name	Type
activator	NarP-phosphate	complex
reactant	nirBDC-cysG	gene
product	nirBDC-cysG_mRNA	RNA

Name:

nrfABCDEFG -> nrfABCDEFG_mRNA

Description:

Transcription of transcription unit nrfABCDEFG. Reaction activation by NarP-phosphate.

Type:

transcription

Pathway Components:

nrfABCDEFG - NarP-phosphate -> nrfABCDEFG_mRNA

Components:

Function	Name	Type
activator	NarP-phosphate	complex
reactant	nrfABCDEFG	gene
product	nrfABCDEFG_mRNA	RNA

Name:

yeaR-yoaG -> yeaR-yoaG_mRNA

Description:

Transcription of transcription unit yeaR-yoaG. Reaction activation by NarP-phosphate.

Type:

transcription

Pathway Components:

yeaR-yoaG - NarP-phosphate -> yeaR-yoaG_mRNA

Components:

Function	Name	Type
activator	NarP-phosphate	complex
reactant	yeaR-yoaG	gene
product	yeaR-yoaG_mRNA	RNA

Name:

ytfE -> ytfE_mRNA

Description:

Transcription of transcription unit ytfE. Reaction activation by NarP-phosphate.

Type:

transcription

Pathway Components:

ytfE - NarP-phosphate -> ytfE_mRNA

Components:

Function	Name	Type
activator	NarP-phosphate	complex
reactant	ytfE	gene
product	ytfE_mRNA	RNA

Name:

fdnGHI -> fdnGHI_mRNA

Description:

Transcription of transcription unit fdnGHI. Reaction inhibition by NarP-phosphate.

Type:

transcription

Pathway Components:

fdnGHI - NarP-phosphate -> fdnGHI_mRNA

Components:

Function	Name	Type
inhibitor	NarP-phosphate	complex
reactant	fdnGHI	gene
product	fdnGHI_mRNA	RNA

Name:

hyaABCDEF -> hyaABCDEF_mRNA

Description:

Transcription of transcription unit hyaABCDEF. Reaction inhibition by NarP-phosphate.

Type:

transcription

Pathway Components:

hyaABCDEF - NarP-phosphate -> hyaABCDEF_mRNA

Components:

Function	Name	Type
inhibitor	NarP-phosphate	complex
reactant	hyaABCDEF	gene
product	hyaABCDEF_mRNA	RNA

Name:

norVW -> norVW_mRNA

Description:

Transcription of transcription unit norVW. Reaction inhibition by NarP-phosphate.

Type:

transcription

Pathway Components:

norVW - NarP-phosphate -> norVW_mRNA

Components:

Function	Name	Type
inhibitor	NarP-phosphate	complex
reactant	norVW	gene
product	norVW_mRNA	RNA

Name:

ydeP -> ydeP_mRNA

Description:

Transcription of transcription unit ydeP. Reaction inhibition by NarP-phosphate.

Type:

transcription

Pathway Components:

ydeP - NarP-phosphate -> ydeP_mRNA

Components:

Function	Name	Type
inhibitor	NarP-phosphate	complex
reactant	ydeP	gene
product	ydeP_mRNA	RNA

Name:

ydhYVWXUT -> ydhYVWXUT_mRNA

Description:

Transcription of transcription unit ydhYVWXUT. Reaction inhibition by NarP-phosphate.

Type:

transcription

Pathway Components:

ydhYVWXUT - NarP-phosphate -> ydhYVWXUT_mRNA

Components:

Function	Name	Type
inhibitor	NarP-phosphate	complex
reactant	ydhYVWXUT	gene
product	ydhYVWXUT_mRNA	RNA

Name:

nirBDC-cysG_mRNA -> NirB

Description:

Translation of NirB

Type:

translation

Pathway Components:

nirBDC-cysG_mRNA -> NirB

Components:

Function	Name	Type
product	NirB	protein
reactant	nirBDC-cysG_mRNA	RNA

Name:

NirB + NirD -> NirD-NirB

Description:

Reaction transforming NirB, NirD into NirD-NirB

Type:

state transition

Pathway Components:

NirB + NirD -> NirD-NirB

Components:

Function	Name	Type
reactant	NirB	protein
reactant	NirD	protein
product	NirD-NirB	complex

Name:

nitrite -> ammonium

Description:

Reaction transforming nitrite into ammonium

Type:

state transition

Pathway Components:

nitrite - NirD-NirB -> ammonium

Components:

Function	Name	Type
catalyzer	NirD-NirB	complex
product	ammonium	simple_molecule
reactant	nitrite	simple_molecule

Name:

nirBDC-cysG_mRNA -> NirD

Description:

Translation of NirD

Type:

translation

Pathway Components:

nirBDC-cysG_mRNA -> NirD

Components:

Function	Name	Type
product	NirD	protein
reactant	nirBDC-cysG_mRNA	RNA

Name:

nirBDC-cysG_mRNA -> NirC

Description:

Translation of NirC

Type:

translation

Pathway Components:

nirBDC-cysG_mRNA -> NirC

Components:

Function	Name	Type
product	NirC	protein
reactant	nirBDC-cysG_mRNA	RNA

Name:

nitrite_Ext -> nitrite

Description:

Transport of nitrite_Ext through a bacterial membrane, leading to the presence of nitrite inside the cell.

Type:

transport

Pathway Components:

nitrite_Ext - NirC -> nitrite

Components:

Function	Name	Type
catalyzer	NirC	protein
product	nitrite	simple_molecule
reactant	nitrite_Ext	simple_molecule

Name:

nirBDC-cysG_mRNA -> CysG

Description:

Translation of CysG

Type:

translation

Pathway Components:

nirBDC-cysG_mRNA -> CysG

Components:

Function	Name	Type
product	CysG	protein
reactant	nirBDC-cysG_mRNA	RNA

Name:

uroporphyrinogen-III + SAM -> adenosylhomocysteine + precorrin-2

Description:

Reaction transforming uroporphyrinogen-III, SAM into adenosylhomocysteine, precorrin-2

Type:

state transition

Pathway Components:

uroporphyrinogen-III + SAM - CysG -> adenosylhomocysteine + precorrin-2

Components:

Function	Name	Type
catalyzer	CysG	protein
reactant	SAM	simple_molecule
product	adenosylhomocysteine	simple_molecule
product	precorrin-2	simple_molecule
reactant	uroporphyrinogen-III	simple_molecule

Name:

precorrin-1 + SAM -> adenosylhomocysteine + precorrin-2

Description:

Reaction transforming precorrin-1, SAM into adenosylhomocysteine, precorrin-2

Type:

state transition

Pathway Components:

precorrin-1 + SAM - CysG -> adenosylhomocysteine + precorrin-2

Components:

Function	Name	Type
catalyzer	CysG	protein
reactant	SAM	simple_molecule
product	adenosylhomocysteine	simple_molecule
reactant	precorrin-1	simple_molecule
product	precorrin-2	simple_molecule

Name:

uroporphyrinogen-III + SAM -> adenosylhomocysteine + precorrin-1

Description:

Reaction transforming uroporphyrinogen-III, SAM into adenosylhomocysteine, precorrin-1

Type:

state transition

Pathway Components:

uroporphyrinogen-III + SAM - CysG -> adenosylhomocysteine + precorrin-1

Components:

Function	Name	Type
catalyzer	CysG	protein
reactant	SAM	simple_molecule
product	adenosylhomocysteine	simple_molecule
product	precorrin-1	simple_molecule
reactant	uroporphyrinogen-III	simple_molecule

Name:

precorrin-2 -> Precorrin

Description:

Reaction transforming precorrin-2 into Precorrin

Type:

state transition

Pathway Components:

precorrin-2 - CysG -> Precorrin

Components:

Function	Name	Type
catalyzer	CysG	protein
product	Precorrin	simple_molecule
reactant	precorrin-2	simple_molecule

Name:

Precorrin + Fe+2 -> siroheme

Description:

Reaction transforming Precorrin, Fe+2 into siroheme

Type:

state transition

Pathway Components:

Precorrin + Fe+2 - CysG -> siroheme

Components:

Function	Name	Type
catalyzer	CysG	protein
reactant	Fe+2	simple_molecule
reactant	Precorrin	simple_molecule
product	siroheme	simple_molecule

Name:

ydeP_mRNA -> YdeP

Description:

Translation of YdeP

Type:

translation

Pathway Components:

ydeP_mRNA -> YdeP

Components:

Function	Name	Type
product	YdeP	protein
reactant	ydeP_mRNA	RNA

Name:

ydhYVWXUT_mRNA -> YdhY

Description:

Translation of YdhY

Type:

translation

Pathway Components:

ydhYVWXUT_mRNA -> YdhY

Components:

Function	Name	Type
product	YdhY	protein
reactant	ydhYVWXUT_mRNA	RNA

Name:

ydhYVWXUT_mRNA -> YdhV

Description:

Translation of YdhV

Type:

translation

Pathway Components:

ydhYVWXUT_mRNA -> YdhV

Components:

Function	Name	Type
product	YdhV	protein
reactant	ydhYVWXUT_mRNA	RNA

Name:

ydhYVWXUT_mRNA -> YdhW

Description:

Translation of YdhW

Type:

translation

Pathway Components:

ydhYVWXUT_mRNA -> YdhW

Components:

Function	Name	Type
product	YdhW	protein
reactant	ydhYVWXUT_mRNA	RNA

Name:

ydhYVWXUT_mRNA -> YdhX

Description:

Translation of YdhX

Type:

translation

Pathway Components:

ydhYVWXUT_mRNA -> YdhX

Components:

Function	Name	Type
product	YdhX	protein
reactant	ydhYVWXUT_mRNA	RNA

Name:

ydhYVWXUT_mRNA -> YdhU

Description:

Translation of YdhU

Type:

translation

Pathway Components:

ydhYVWXUT_mRNA -> YdhU

Components:

Function	Name	Type
product	YdhU	protein
reactant	ydhYVWXUT_mRNA	RNA

Name:

ydhYVWXUT_mRNA -> YdhT

Description:

Translation of YdhT

Type:

translation

Pathway Components:

ydhYVWXUT_mRNA -> YdhT

Components:

Function	Name	Type
product	YdhT	protein
reactant	ydhYVWXUT_mRNA	RNA

Name:

hyaABCDEF_mRNA -> HyaA

Description:

Translation of HyaA

Type:

translation

Pathway Components:

hyaABCDEF_mRNA -> HyaA

Components:

Function	Name	Type
product	HyaA	protein
reactant	hyaABCDEF_mRNA	RNA

Name:

HyaB + HyaA + HyaC -> HyaA-HyaB-HyaC

Description:

Reaction transforming HyaB, HyaA, HyaC into HyaA-HyaB-HyaC

Type:

state transition

Pathway Components:

HyaB + HyaA + HyaC -> HyaA-HyaB-HyaC

Components:

Function	Name	Type
reactant	HyaA	protein
product	HyaA-HyaB-HyaC	complex
reactant	HyaB	protein
reactant	HyaC	protein

Name:

hyaABCDEF_mRNA -> HyaB

Description:

Translation of HyaB

Type:

translation

Pathway Components:

hyaABCDEF_mRNA -> HyaB

Components:

Function	Name	Type
product	HyaB	protein
reactant	hyaABCDEF_mRNA	RNA

Name:

hyaABCDEF_mRNA -> HyaC

Description:

Translation of HyaC

Type:

translation

Pathway Components:

hyaABCDEF_mRNA -> HyaC

Components:

Function	Name	Type
product	HyaC	protein
reactant	hyaABCDEF_mRNA	RNA

Name:

hyaABCDEF_mRNA -> HyaD

Description:

Translation of HyaD

Type:

translation

Pathway Components:

hyaABCDEF_mRNA -> HyaD

Components:

Function	Name	Type
product	HyaD	protein
reactant	hyaABCDEF_mRNA	RNA

Name:

hyaABCDEF_mRNA -> HyaE

Description:

Translation of HyaE

Type:

translation

Pathway Components:

hyaABCDEF_mRNA -> HyaE

Components:

Function	Name	Type
product	HyaE	protein
reactant	hyaABCDEF_mRNA	RNA

Name:

hyaABCDEF_mRNA -> HyaF

Description:

Translation of HyaF

Type:

translation

Pathway Components:

hyaABCDEF_mRNA -> HyaF

Components:

Function	Name	Type
product	HyaF	protein
reactant	hyaABCDEF_mRNA	RNA

Name:

yeaR-yoaG_mRNA -> YeaR

Description:

Translation of YeaR

Type:

translation

Pathway Components:

yeaR-yoaG_mRNA -> YeaR

Components:

Function	Name	Type
product	YeaR	protein
reactant	yeaR-yoaG_mRNA	RNA

Name:

yeaR-yoaG_mRNA -> YoaG

Description:

Translation of YoaG

Type:

translation

Pathway Components:

yeaR-yoaG_mRNA -> YoaG

Components:

Function	Name	Type
product	YoaG	protein
reactant	yeaR-yoaG_mRNA	RNA

Name:

fdhF_mRNA -> FdhF

Description:

Translation of FdhF

Type:

translation

Pathway Components:

fdhF_mRNA -> FdhF

Components:

Function	Name	Type
product	FdhF	protein
reactant	fdhF_mRNA	RNA

Name:

HycC + HycB + FdhF + HycG + HycF + HycD + HycE -> FdhF-HycE-HycB-HycG-HycF-HycC-HycD

Description:

Reaction transforming HycC, HycB, FdhF, HycG, HycF, HycD, HycE into FdhF-HycE-HycB-HycG-HycF-HycC-HycD

Type:

state transition

Pathway Components:

HycC + HycB + FdhF + HycG + HycF + HycD + HycE -> FdhF-HycE-HycB-HycG-HycF-HycC-HycD

Components:

Function	Name	Type
reactant	FdhF	protein
product	FdhF-HycE-HycB-HycG-HycF-HycC-HycD	complex
reactant	HycB	protein
reactant	HycC	protein
reactant	HycD	protein
reactant	HycE	protein
reactant	HycF	protein
reactant	HycG	protein

Name:

formate -> hydrogen + CO2

Description:

Reaction transforming formate into hydrogen, CO2

Type:

state transition

Pathway Components:

formate - FdhF-HycE-HycB-HycG-HycF-HycC-HycD -> hydrogen + CO2

Components:

Function	Name	Type
product	CO2	simple_molecule
catalyzer	FdhF-HycE-HycB-HycG-HycF-HycC-HycD	complex
reactant	formate	simple_molecule
product	hydrogen	simple_molecule

Name:

oxidized hydrogenase 3 + formate -> reduced hydrogenase 3 + CO2

Description:

Reaction transforming oxidized hydrogenase 3, formate into reduced hydrogenase 3, CO2

Type:

state transition

Pathway Components:

oxidized hydrogenase 3 + formate - FdhF -> reduced hydrogenase 3 + CO2

Components:

Function	Name	Type
product	CO2	simple_molecule
catalyzer	FdhF	protein
reactant	formate	simple_molecule
reactant	oxidized hydrogenase 3	simple_molecule
product	reduced hydrogenase 3	simple_molecule

Name:

acceptors + formate -> A(H2) + CO2

Description:

Reaction transforming acceptors, formate into A(H2), CO2

Type:

state transition

Pathway Components:

acceptors + formate - FdhF - nitrate - nitrite -> A(H2) + CO2

Components:

Function	Name	Type
product	A(H2)	simple_molecule
product	CO2	simple_molecule
catalyzer	FdhF	protein
reactant	acceptors	simple_molecule
reactant	formate	simple_molecule
inhibitor	nitrate	simple_molecule
inhibitor	nitrite	simple_molecule

Name:

hcp-hcr_mRNA -> Hcp

Description:

Translation of Hcp

Type:

translation

Pathway Components:

hcp-hcr_mRNA -> Hcp

Components:

Function	Name	Type
product	Hcp	protein
reactant	hcp-hcr_mRNA	RNA

Name:

NH2OH + A(H2) -> acceptors + ammonium

Description:

Reaction transforming NH2OH, A(H2) into acceptors, ammonium

Type:

state transition

Pathway Components:

NH2OH + A(H2) - Hcp -> acceptors + ammonium

Components:

Function	Name	Type
reactant	A(H2)	simple_molecule
catalyzer	Hcp	protein
reactant	NH2OH	simple_molecule
product	acceptors	simple_molecule
product	ammonium	simple_molecule

Name:

hcp-hcr_mRNA -> Hcr

Description:

Translation of Hcr

Type:

translation

Pathway Components:

hcp-hcr_mRNA -> Hcr

Components:

Function	Name	Type
product	Hcr	protein
reactant	hcp-hcr_mRNA	RNA

Name:

oxidized hybrid-cluster protein -> reduced hybrid-cluster protein

Description:

Reaction transforming oxidized hybrid-cluster protein into reduced hybrid-cluster protein

Type:

state transition

Pathway Components:

oxidized hybrid-cluster protein - Hcr -> reduced hybrid-cluster protein

Components:

Function	Name	Type
catalyzer	Hcr	protein
reactant	oxidized hybrid-cluster protein	simple_molecule
product	reduced hybrid-cluster protein	simple_molecule

Name:

norVW_mRNA -> NorV

Description:

Translation of NorV

Type:

translation

Pathway Components:

norVW_mRNA -> NorV

Components:

Function	Name	Type
product	NorV	protein
reactant	norVW_mRNA	RNA

Name:

norVW_mRNA -> FlRd

Description:

Translation of FlRd

Type:

translation

Pathway Components:

norVW_mRNA -> FlRd

Components:

Function	Name	Type
product	FlRd	simple_molecule
reactant	norVW_mRNA	RNA

Name:

norVW_mRNA -> NorW

Description:

Translation of NorW

Type:

translation

Pathway Components:

norVW_mRNA -> NorW

Components:

Function	Name	Type
product	NorW	protein
reactant	norVW_mRNA	RNA

Name:

oxidized flavorubredoxin -> FlRd

Description:

Reaction transforming oxidized flavorubredoxin into FlRd

Type:

state transition

Pathway Components:

oxidized flavorubredoxin - NorW -> FlRd

Components:

Function	Name	Type
product	FlRd	simple_molecule
catalyzer	NorW	protein
reactant	oxidized flavorubredoxin	simple_molecule

Name:

ytfE_mRNA -> YtfE

Description:

Translation of YtfE

Type:

translation

Pathway Components:

ytfE_mRNA -> YtfE

Components:

Function	Name	Type
product	YtfE	protein
reactant	ytfE_mRNA	RNA

Name:

fdnGHI_mRNA -> FdnG

Description:

Translation of FdnG

Type:

translation

Pathway Components:

fdnGHI_mRNA -> FdnG

Components:

Function	Name	Type
product	FdnG	protein
reactant	fdnGHI_mRNA	RNA

Name:

FdnG + FdnI + FdnH -> FdnI-FdnH-FdnG

Description:

Reaction transforming FdnG, FdnI, FdnH into FdnI-FdnH-FdnG

Type:

state transition

Pathway Components:

FdnG + FdnI + FdnH -> FdnI-FdnH-FdnG

Components:

Function	Name	Type
reactant	FdnG	protein
reactant	FdnH	protein
reactant	FdnI	protein
product	FdnI-FdnH-FdnG	complex

Name:

fdnGHI_mRNA -> FdnH

Description:

Translation of FdnH

Type:

translation

Pathway Components:

fdnGHI_mRNA -> FdnH

Components:

Function	Name	Type
product	FdnH	protein
reactant	fdnGHI_mRNA	RNA

Name:

fdnGHI_mRNA -> FdnI

Description:

Translation of FdnI

Type:

translation

Pathway Components:

fdnGHI_mRNA -> FdnI

Components:

Function	Name	Type
product	FdnI	protein
reactant	fdnGHI_mRNA	RNA

Gensor Unit Map