RegulonDB RegulonDB

NarL Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
L-malate L-malate_Ext 2'-(5-triphosphoribosyl)-3'-dephospho-CoA 2-oxobutyrate 3-octaprenyl-4-hydroxybenzoate 4-hydroxybenzoate AdhE AspA CO2 CaiF CcmA CcmB CcmC CcmD CcmE CcmF CcmG CcmH CitC CitD CitE CitF CitG CitX CydC CydD CysG D-tartrate D-tartrate_Ext DNA guanine DcuA DcuB DcuR DcuS DmsA DmsB DmsC DmsD DpiA DpiB FdhF FdnG FdnH FdnI Fe+2 FocA FrdA FrdB FrdC FrdD FumB H2 H2_Ext Hcp Hcr HyaA HyaB HyaC HyaD HyaE HyaF HybA HybB HybC HybD HybE HybF HybG HybO HycB HycD HycE HycF HycG asp asp_Ext L-cysteine L-cysteine_Ext MoeA MoeB NapA NapB NapD NapF NapG NapH NarG NarH NarI NarJ NarK NarL nickel nickel_Ext NikB NikC NikE NikR NirB NirC NirD NorV NorW NrfA NrfB NrfC NrfD NrfE NrfF NrfG NuoA NuoB NuoC NuoE NuoF NuoG NuoH NuoI NuoJ NuoK NuoL NuoM NuoN Ogt pyruvate formate lyase, active form PflB S-adenosyl-L-homocysteine S-adenosyl-L-methionine TorA TorC TorD UbiA UbiC YdhT YdhU YdhV YdhW YdhX YdhY YeaR YnfE YnfF YnfG YnfH YoaG YtfE a C4-dicarboxylate a C4-dicarboxylate_Ext DNA 6-O-methylguanine a [citrate-lyase] (acetyl form) a [citrate-lyase] (citryl form) a [citrate-lyase] (thiol form) peptide cysteine carboxy-adenylated MoaD a citrate lyase apo-[acyl-carrier protein] a citrate lyase holo-[acyl-carrier protein] a menaquinol a menaquinol_Ext menaquinone menaquinone_Ext 1-Alcohol a protein-S-methyl-L-cysteine reduced Cytochrome C protein a reduced cytochrome c552 a reduced electron acceptor a reduced hydrogenase 3 a small subunit of molybdopterin synthase acetaldehyde ac-CoA adenine H2Dtpp-mADP adhE adhE_mRNA OPP ammonia RCHO an oxidized c-type cytochrome an oxidized cytochrome c552 an oxidized electron acceptor an oxidized hydrogenase 3 an ubiquinol ubiquinone ubiquinone_Ext aspA aspA-dcuA aspA-dcuA_mRNA aspA_mRNA caiF caiF_mRNA chorismate citCDEFXG citCDEFXG_mRNA cit CoA cydDC cydDC_mRNA dcuB-fumB dcuB-fumB_mRNA dcuSR dcuSR_mRNA dephospho-CoA DMS DMSO PP dmsABC dmsABC_mRNA dpiBA dpiBA_mRNA eth fdhF fdhF_mRNA fdnGHI fdnGHI_mRNA focA-pflB focA-pflB_mRNA formate formate_Ext frdABCD frdABCD_mRNA fumarate fumarate_Ext GSH GSH_Ext hcp-hcr hcp-hcr_mRNA hyaABCDEF hyaABCDEF_mRNA hybOABCDEFG hybOABCDEFG_mRNA NH2OH moeAB moeAB_mRNA molybdate molybdenum cofactor napFDAGHBC-ccmABCDEFGH napFDAGHBC-ccmABCDEFGH_mRNA narGHJI narGHJI_mRNA narK narK_mRNA nikABCDER nikABCDER_mRNA nirBDC-cysG nirBDC-cysG_mRNA nitrate nitrate_Ext NO nitrite nitrite_Ext nitrous oxide norVW norVW_mRNA nrfABCDEFG nrfABCDEFG_mRNA nuoABCEFGHIJKLMN nuoABCEFGHIJKLMN_mRNA ogt ogt_mRNA oxalacetate oxidized flavorubredoxin phosphate precorrin-1 precorrin-2 propanoyl-CoA protoheme IX protoheme IX_Ext pyruvate pyruvate formate-lyase FlRd selenate selenite siroheme Precorrin succinate succinate_Ext torCAD torCAD_mRNA (CH3)3NH TMAO ubiCA ubiCA_mRNA uroporphyrinogen-III ydhYVWXUT ydhYVWXUT_mRNA yeaR-yoaG yeaR-yoaG_mRNA ynfEFGH-dmsD ynfEFGH-dmsD_mRNA ytfE ytfE_mRNA |Ox-Hybrid-Cluster-Proteins| |Red-Hybrid-Cluster-Proteins| phosphate NikA a [citrate-lyase] (acetyl form) acetate PP PP succinate succinate_Ext succinate succinate_Ext succinate fumarate fumarate fumarate succinate oxalacetate asp succinate_Ext nitrate_Ext nitrite nitrite menaquinone menaquinone_Ext formate_Ext CO2 a reduced electron acceptor a reduced electron acceptor menaquinone menaquinone pyruvate an ubiquinol phosphate phosphate phosphate formate CoA formate formate formate formate CO2 CO2 an oxidized electron acceptor an oxidized electron acceptor a menaquinol a menaquinol menaquinone_Ext nitrite a menaquinol menaquinone_Ext H2_Ext PP S-adenosyl-L-homocysteine NikD HycC HycE HycB HycG HycD HycF FdhF HycC CitD CitE CitF NirD NirB NapH NapA NapB NapG CcmA CcmE CcmB CcmD CcmC NapC HyaB HyaA HyaC NarG NarH NarI HybC HybA HybB HybO NuoN NuoM NuoL NuoJ NuoK NuoI NuoH NuoF NuoG NuoE NuoC NuoA NuoB NikA NikB NikC NikD NikE CydC CydD DmsA DmsB DmsC FdnI FdnH FdnG TorA TorC YnfG YnfE YnfF YnfH NrfC NrfA NrfB NrfD a menaquinol


Gensor Unit       
Name: NarL
Signal name: presence of nitrate or nitrate.
Classification:
Groups: GUs related to the two-component system
Gene Ontology Terms (GO): GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0003824 - catalytic activity
GO:0004325 - ferrochelatase activity
GO:0006744 - ubiquinone biosynthetic process
GO:0015413 - nickel-transporting ATPase activity
GO:0018315 - molybdenum incorporation into molybdenum-molybdopterin complex
GO:0006099 - tricarboxylic acid cycle
GO:0015499 - formate transmembrane transporter activity
GO:0008652 - cellular amino acid biosynthetic process
GO:0010181 - FMN binding
GO:0008814 - citrate CoA-transferase activity
Read more >
Components:
Function Name Type
simple molecule |Red-Hybrid-Cluster-Proteins| simple molecule


Reactions       
Showing 228 reactions
NarL + phosphate NarL-Phosphorylated
Name: NarL + phosphate -> NarL-Phosphorylated
Description: Reaction transforming NarL, phosphate into NarL-Phosphorylated
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant phosphate simple molecule nd nd
reactant NarL protein nd nd
product NarL-Phosphorylated complex nd nd
adhE adhE_mRNA
Name: adhE -> adhE_mRNA
Description: Transcription of transcription unit adhE; reaction inhibition by Cra.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant adhE gene nd nd
product adhE_mRNA RNA nd nd
aspA aspA_mRNA
Name: aspA -> aspA_mRNA
Description: Transcription of transcription unit aspA; reaction inhibition by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant aspA gene nd nd
product aspA_mRNA RNA nd nd
aspA-dcuA aspA-dcuA_mRNA
Name: aspA-dcuA -> aspA-dcuA_mRNA
Description: Transcription of transcription unit aspA-dcuA; reaction inhibition by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant aspA-dcuA gene nd nd
product aspA-dcuA_mRNA RNA nd nd
caiF caiF_mRNA
Name: caiF -> caiF_mRNA
Description: Transcription of transcription unit caiF; reaction inhibition by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product caiF_mRNA RNA nd nd
reactant caiF gene nd nd
citCDEFXG citCDEFXG_mRNA
Name: citCDEFXG -> citCDEFXG_mRNA
Description: Transcription of transcription unit citCDEFXG; reaction activation by DpiA-Pasp.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product citCDEFXG_mRNA RNA nd nd
reactant citCDEFXG gene nd nd
cydDC cydDC_mRNA
Name: cydDC -> cydDC_mRNA
Description: Transcription of transcription unit cydDC; reaction activation by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant cydDC gene nd nd
product cydDC_mRNA RNA nd nd
dcuB-fumB dcuB-fumB_mRNA
Name: dcuB-fumB -> dcuB-fumB_mRNA
Description: Transcription of transcription unit dcuB-fumB; reaction activation by DcuR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant dcuB-fumB gene nd nd
product dcuB-fumB_mRNA RNA nd nd
dcuSR dcuSR_mRNA
Name: dcuSR -> dcuSR_mRNA
Description: Transcription of transcription unit dcuSR; reaction inhibition by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product dcuSR_mRNA RNA nd nd
reactant dcuSR gene nd nd
dmsABC dmsABC_mRNA
Name: dmsABC -> dmsABC_mRNA
Description: Transcription of transcription unit dmsABC; reaction inhibition by ModE-molybdate.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant dmsABC gene nd nd
product dmsABC_mRNA RNA nd nd
dpiBA dpiBA_mRNA
Name: dpiBA -> dpiBA_mRNA
Description: Transcription of transcription unit dpiBA; reaction activation by DcuR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant dpiBA gene nd nd
product dpiBA_mRNA RNA nd nd
fdhF fdhF_mRNA
Name: fdhF -> fdhF_mRNA
Description: Transcription of transcription unit fdhF; reaction activation by FhlA-Formate.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant fdhF gene nd nd
product fdhF_mRNA RNA nd nd
fdnGHI fdnGHI_mRNA
Name: fdnGHI -> fdnGHI_mRNA
Description: Transcription of transcription unit fdnGHI; reaction activation by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product fdnGHI_mRNA RNA nd nd
reactant fdnGHI gene nd nd
focA-pflB focA-pflB_mRNA
Name: focA-pflB -> focA-pflB_mRNA
Description: Transcription of transcription unit focA-pflB; reaction inhibition by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant focA-pflB gene nd nd
product focA-pflB_mRNA RNA nd nd
frdABCD frdABCD_mRNA
Name: frdABCD -> frdABCD_mRNA
Description: Transcription of transcription unit frdABCD; reaction activation by DcuR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product frdABCD_mRNA RNA nd nd
reactant frdABCD gene nd nd
hcp-hcr hcp-hcr_mRNA
Name: hcp-hcr -> hcp-hcr_mRNA
Description: Transcription of transcription unit hcp-hcr; reaction activation by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product hcp-hcr_mRNA RNA nd nd
reactant hcp-hcr gene nd nd
hyaABCDEF hyaABCDEF_mRNA
Name: hyaABCDEF -> hyaABCDEF_mRNA
Description: Transcription of transcription unit hyaABCDEF; reaction activation by AppY.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product hyaABCDEF_mRNA RNA nd nd
reactant hyaABCDEF gene nd nd
hybOABCDEFG hybOABCDEFG_mRNA
Name: hybOABCDEFG -> hybOABCDEFG_mRNA
Description: Transcription of transcription unit hybOABCDEFG; reaction inhibition by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product hybOABCDEFG_mRNA RNA nd nd
reactant hybOABCDEFG gene nd nd
moeAB moeAB_mRNA
Name: moeAB -> moeAB_mRNA
Description: Transcription of transcription unit moeAB; reaction activation by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant moeAB gene nd nd
product moeAB_mRNA RNA nd nd
napFDAGHBC-ccmABCDEFGH napFDAGHBC-ccmABCDEFGH_mRNA
Name: napFDAGHBC-ccmABCDEFGH -> napFDAGHBC-ccmABCDEFGH_mRNA
Description: Transcription of transcription unit napFDAGHBC-ccmABCDEFGH; reaction activation by FlhDC.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product napFDAGHBC-ccmABCDEFGH_mRNA RNA nd nd
reactant napFDAGHBC-ccmABCDEFGH gene nd nd
narGHJI narGHJI_mRNA
Name: narGHJI -> narGHJI_mRNA
Description: Transcription of transcription unit narGHJI; reaction activation by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant narGHJI gene nd nd
product narGHJI_mRNA RNA nd nd
narK narK_mRNA
Name: narK -> narK_mRNA
Description: Transcription of transcription unit narK; reaction activation by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product narK_mRNA RNA nd nd
reactant narK gene nd nd
nikABCDER nikABCDER_mRNA
Name: nikABCDER -> nikABCDER_mRNA
Description: Transcription of transcription unit nikABCDER; reaction inhibition by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product nikABCDER_mRNA RNA nd nd
reactant nikABCDER gene nd nd
nirBDC-cysG nirBDC-cysG_mRNA
Name: nirBDC-cysG -> nirBDC-cysG_mRNA
Description: Transcription of transcription unit nirBDC-cysG; reaction inhibition by Cra.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product nirBDC-cysG_mRNA RNA nd nd
reactant nirBDC-cysG gene nd nd
norVW norVW_mRNA
Name: norVW -> norVW_mRNA
Description: Transcription of transcription unit norVW; reaction inhibition by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product norVW_mRNA RNA nd nd
reactant norVW gene nd nd
nrfABCDEFG nrfABCDEFG_mRNA
Name: nrfABCDEFG -> nrfABCDEFG_mRNA
Description: Transcription of transcription unit nrfABCDEFG; reaction activation by FlhDC.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant nrfABCDEFG gene nd nd
product nrfABCDEFG_mRNA RNA nd nd
nuoABCEFGHIJKLMN nuoABCEFGHIJKLMN_mRNA
Name: nuoABCEFGHIJKLMN -> nuoABCEFGHIJKLMN_mRNA
Description: Transcription of transcription unit nuoABCEFGHIJKLMN; reaction activation by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant nuoABCEFGHIJKLMN gene nd nd
product nuoABCEFGHIJKLMN_mRNA RNA nd nd
ogt ogt_mRNA
Name: ogt -> ogt_mRNA
Description: Transcription of transcription unit ogt; reaction activation by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product ogt_mRNA RNA nd nd
reactant ogt gene nd nd
torCAD torCAD_mRNA
Name: torCAD -> torCAD_mRNA
Description: Transcription of transcription unit torCAD; reaction inhibition by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product torCAD_mRNA RNA nd nd
reactant torCAD gene nd nd
ubiCA ubiCA_mRNA
Name: ubiCA -> ubiCA_mRNA
Description: Transcription of transcription unit ubiCA; reaction inhibition by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant ubiCA gene nd nd
product ubiCA_mRNA RNA nd nd
ydhYVWXUT ydhYVWXUT_mRNA
Name: ydhYVWXUT -> ydhYVWXUT_mRNA
Description: Transcription of transcription unit ydhYVWXUT; reaction inhibition by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant ydhYVWXUT gene nd nd
product ydhYVWXUT_mRNA RNA nd nd
yeaR-yoaG yeaR-yoaG_mRNA
Name: yeaR-yoaG -> yeaR-yoaG_mRNA
Description: Transcription of transcription unit yeaR-yoaG; reaction activation by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant yeaR-yoaG gene nd nd
product yeaR-yoaG_mRNA RNA nd nd
ynfEFGH-dmsD ynfEFGH-dmsD_mRNA
Name: ynfEFGH-dmsD -> ynfEFGH-dmsD_mRNA
Description: Transcription of transcription unit ynfEFGH-dmsD; reaction inhibition by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product ynfEFGH-dmsD_mRNA RNA nd nd
reactant ynfEFGH-dmsD gene nd nd
ytfE ytfE_mRNA
Name: ytfE -> ytfE_mRNA
Description: Transcription of transcription unit ytfE; reaction activation by NarL-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant ytfE gene nd nd
product ytfE_mRNA RNA nd nd
fdnGHI_mRNA FdnG
Name: fdnGHI_mRNA -> FdnG
Description: Translation of FdnG
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FdnG protein nd nd
reactant fdnGHI_mRNA RNA nd nd
FdnG + FdnH + FdnI FdnG-FdnH-FdnI
Name: FdnG + FdnH + FdnI -> FdnG-FdnH-FdnI
Description: Reaction transforming FdnG, FdnH, FdnI into FdnG-FdnH-FdnI
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant FdnI protein nd nd
reactant FdnG protein nd nd
product FdnG-FdnH-FdnI complex nd nd
reactant FdnH protein nd nd
formate_Ext + menaquinone_Ext CO2 + a menaquinol
Name: formate_Ext + menaquinone_Ext -> CO2 + a menaquinol
Description: Transport of formate_Ext, menaquinone_Ext through a bacterial membrane, leading to the presence of CO2, a menaquinol inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product CO2 simple molecule nd nd
reactant menaquinone_Ext simple molecule nd nd
product a menaquinol simple molecule nd nd
reactant formate_Ext simple molecule nd nd
hybOABCDEFG_mRNA HybC
Name: hybOABCDEFG_mRNA -> HybC
Description: Translation of HybC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product HybC protein nd nd
reactant hybOABCDEFG_mRNA RNA nd nd
HybA + HybB + HybO + HybC HybA-HybB-HybO-HybC
Name: HybA + HybB + HybO + HybC -> HybA-HybB-HybO-HybC
Description: Reaction transforming HybA, HybB, HybO, HybC into HybA-HybB-HybO-HybC
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product HybA-HybB-HybO-HybC complex nd nd
reactant HybB protein nd nd
reactant HybO protein nd nd
reactant HybC protein nd nd
reactant HybA protein nd nd
menaquinone_Ext + H2_Ext a menaquinol
Name: menaquinone_Ext + H2_Ext -> a menaquinol
Description: Transport of menaquinone_Ext, H2_Ext through a bacterial membrane, leading to the presence of a menaquinol inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant H2_Ext simple molecule nd nd
reactant menaquinone_Ext simple molecule nd nd
product a menaquinol simple molecule nd nd
napFDAGHBC-ccmABCDEFGH_mRNA NapC
Name: napFDAGHBC-ccmABCDEFGH_mRNA -> NapC
Description: Translation of NapC
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant napFDAGHBC-ccmABCDEFGH_mRNA RNA nd nd
product NapC protein nd nd
NapB + NapC + NapH + NapG + NapA NapB-NapC-NapH-NapG-NapA
Name: NapB + NapC + NapH + NapG + NapA -> NapB-NapC-NapH-NapG-NapA
Description: Reaction transforming NapB, NapC, NapH, NapG, NapA into NapB-NapC-NapH-NapG-NapA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant NapG protein nd nd
reactant NapB protein nd nd
product NapB-NapC-NapH-NapG-NapA complex nd nd
reactant NapA protein nd nd
reactant NapH protein nd nd
reactant NapC protein nd nd
nitrate + an ubiquinol nitrite + ubiquinone
Name: nitrate + an ubiquinol -> nitrite + ubiquinone
Description: Reaction transforming nitrate, an ubiquinol into nitrite, ubiquinone
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product ubiquinone simple molecule nd nd
reactant an ubiquinol simple molecule nd nd
reactant nitrate simple molecule nd nd
product nitrite simple molecule nd nd
nirBDC-cysG_mRNA NirC
Name: nirBDC-cysG_mRNA -> NirC
Description: Translation of NirC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product NirC protein nd nd
reactant nirBDC-cysG_mRNA RNA nd nd
nitrite_Ext nitrite
Name: nitrite_Ext -> nitrite
Description: Transport of nitrite_Ext through a bacterial membrane, leading to the presence of nitrite inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant nitrite_Ext simple molecule nd nd
product nitrite simple molecule nd nd
ydhYVWXUT_mRNA YdhT
Name: ydhYVWXUT_mRNA -> YdhT
Description: Translation of YdhT
Type: translation
Components:
Function Name Type Evidence Reference(s)
product YdhT protein nd nd
reactant ydhYVWXUT_mRNA RNA nd nd
ynfEFGH-dmsD_mRNA YnfF
Name: ynfEFGH-dmsD_mRNA -> YnfF
Description: Translation of YnfF
Type: translation
Components:
Function Name Type Evidence Reference(s)
product YnfF protein nd nd
reactant ynfEFGH-dmsD_mRNA RNA nd nd
YnfE + YnfF + YnfG + YnfH YnfE-YnfF-YnfG-YnfH
Name: YnfE + YnfF + YnfG + YnfH -> YnfE-YnfF-YnfG-YnfH
Description: Reaction transforming YnfE, YnfF, YnfG, YnfH into YnfE-YnfF-YnfG-YnfH
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant YnfG protein nd nd
reactant YnfF protein nd nd
product YnfE-YnfF-YnfG-YnfH complex nd nd
reactant YnfH protein nd nd
reactant YnfE protein nd nd
selenite + an oxidized electron acceptor selenate + a reduced electron acceptor
Name: selenite + an oxidized electron acceptor -> selenate + a reduced electron acceptor
Description: Reaction transforming selenite, an oxidized electron acceptor into selenate, a reduced electron acceptor
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant an oxidized electron acceptor simple molecule nd nd
product selenate simple molecule nd nd
reactant selenite simple molecule nd nd
product a reduced electron acceptor simple molecule nd nd
nrfABCDEFG_mRNA NrfG
Name: nrfABCDEFG_mRNA -> NrfG
Description: Translation of NrfG
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant nrfABCDEFG_mRNA RNA nd nd
product NrfG protein nd nd
norVW_mRNA NorV
Name: norVW_mRNA -> NorV
Description: Translation of NorV
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant norVW_mRNA RNA nd nd
product NorV protein nd nd
nitrous oxide + an oxidized c-type cytochrome NO + reduced Cytochrome C protein
Name: nitrous oxide + an oxidized c-type cytochrome -> NO + reduced Cytochrome C protein
Description: Reaction transforming nitrous oxide, an oxidized c-type cytochrome into NO, reduced Cytochrome C protein
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product NO simple molecule nd nd
reactant nitrous oxide simple molecule nd nd
product reduced Cytochrome C protein simple molecule nd nd
reactant an oxidized c-type cytochrome simple molecule nd nd
ydhYVWXUT_mRNA YdhU
Name: ydhYVWXUT_mRNA -> YdhU
Description: Translation of YdhU
Type: translation
Components:
Function Name Type Evidence Reference(s)
product YdhU protein nd nd
reactant ydhYVWXUT_mRNA RNA nd nd
ogt_mRNA Ogt
Name: ogt_mRNA -> Ogt
Description: Translation of Ogt
Type: translation
Components:
Function Name Type Evidence Reference(s)
product Ogt protein nd nd
reactant ogt_mRNA RNA nd nd
peptide cysteine + DNA 6-O-methylguanine a protein-S-methyl-L-cysteine + DNA guanine
Name: peptide cysteine + DNA 6-O-methylguanine -> a protein-S-methyl-L-cysteine + DNA guanine
Description: Reaction transforming peptide cysteine, DNA 6-O-methylguanine into a protein-S-methyl-L-cysteine, DNA guanine
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant DNA 6-O-methylguanine simple molecule nd nd
product a protein-S-methyl-L-cysteine simple molecule nd nd
product DNA guanine simple molecule nd nd
reactant peptide cysteine simple molecule nd nd
fdhF_mRNA FdhF
Name: fdhF_mRNA -> FdhF
Description: Translation of FdhF
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FdhF protein nd nd
reactant fdhF_mRNA RNA nd nd
FdhF + HycE + HycB + HycG + HycF + HycC + HycD FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Name: FdhF + HycE + HycB + HycG + HycF + HycC + HycD -> FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Description: Reaction transforming FdhF, HycE, HycB, HycG, HycF, HycC, HycD into FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant FdhF protein nd nd
reactant HycB protein nd nd
reactant HycD protein nd nd
reactant HycE protein nd nd
reactant HycF protein nd nd
product FdhF-HycE-HycB-HycG-HycF-HycC-HycD complex nd nd
reactant HycG protein nd nd
reactant HycC protein nd nd
formate CO2 + H2
Name: formate -> CO2 + H2
Description: Reaction transforming formate into CO2, H2
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product CO2 simple molecule nd nd
product H2 simple molecule nd nd
reactant formate simple molecule nd nd
formate + an oxidized hydrogenase 3 CO2 + a reduced hydrogenase 3
Name: formate + an oxidized hydrogenase 3 -> CO2 + a reduced hydrogenase 3
Description: Reaction transforming formate, an oxidized hydrogenase 3 into CO2, a reduced hydrogenase 3
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant an oxidized hydrogenase 3 simple molecule nd nd
product CO2 simple molecule nd nd
product a reduced hydrogenase 3 simple molecule nd nd
reactant formate simple molecule nd nd
formate + an oxidized electron acceptor CO2 + a reduced electron acceptor
Name: formate + an oxidized electron acceptor -> CO2 + a reduced electron acceptor
Description: Reaction transforming formate, an oxidized electron acceptor into CO2, a reduced electron acceptor
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product a reduced electron acceptor simple molecule nd nd
product CO2 simple molecule nd nd
reactant an oxidized electron acceptor simple molecule nd nd
reactant formate simple molecule nd nd
napFDAGHBC-ccmABCDEFGH_mRNA NapF
Name: napFDAGHBC-ccmABCDEFGH_mRNA -> NapF
Description: Translation of NapF
Type: translation
Components:
Function Name Type Evidence Reference(s)
product NapF protein nd nd
reactant napFDAGHBC-ccmABCDEFGH_mRNA RNA nd nd
nikABCDER_mRNA NikR
Name: nikABCDER_mRNA -> NikR
Description: Translation of NikR
Type: translation
Components:
Function Name Type Evidence Reference(s)
product NikR protein nd nd
reactant nikABCDER_mRNA RNA nd nd
nuoABCEFGHIJKLMN_mRNA NuoI
Name: nuoABCEFGHIJKLMN_mRNA -> NuoI
Description: Translation of NuoI
Type: translation
Components:
Function Name Type Evidence Reference(s)
product NuoI protein nd nd
reactant nuoABCEFGHIJKLMN_mRNA RNA nd nd
NuoA + NuoH + NuoJ + NuoK + NuoL + NuoM + NuoN + NuoG + NuoF + NuoE + NuoI + NuoC + NuoB NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoG-NuoF-NuoE-NuoI-NuoC-NuoB
Name: NuoA + NuoH + NuoJ + NuoK + NuoL + NuoM + NuoN + NuoG + NuoF + NuoE + NuoI + NuoC + NuoB -> NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoG-NuoF-NuoE-NuoI-NuoC-NuoB
Description: Reaction transforming NuoA, NuoH, NuoJ, NuoK, NuoL, NuoM, NuoN, NuoG, NuoF, NuoE, NuoI, NuoC, NuoB into NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoG-NuoF-NuoE-NuoI-NuoC-NuoB
Type: state transition
Components: Show/Hide Components Table
Function Name Type Evidence Reference(s)
reactant NuoG protein nd nd
reactant NuoM protein nd nd
reactant NuoF protein nd nd
reactant NuoK protein nd nd
reactant NuoN protein nd nd
reactant NuoA protein nd nd
reactant NuoJ protein nd nd
product NuoA-NuoH-NuoJ-NuoK-NuoL-NuoM-NuoN-NuoG-NuoF-NuoE-NuoI-NuoC-NuoB complex nd nd
reactant NuoL protein nd nd
reactant NuoB protein nd nd
reactant NuoH protein nd nd
reactant NuoC protein nd nd
reactant NuoE protein nd nd
reactant NuoI protein nd nd
ubiquinone_Ext an ubiquinol
Name: ubiquinone_Ext -> an ubiquinol
Description: Transport of ubiquinone_Ext through a bacterial membrane, leading to the presence of an ubiquinol inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant ubiquinone_Ext simple molecule nd nd
product an ubiquinol simple molecule nd nd
menaquinone_Ext a menaquinol
Name: menaquinone_Ext -> a menaquinol
Description: Transport of menaquinone_Ext through a bacterial membrane, leading to the presence of a menaquinol inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product a menaquinol simple molecule nd nd
reactant menaquinone_Ext simple molecule nd nd