RegulonDB RegulonDB

Nac Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
2'-deoxyadenosine 2'-deoxyadenosine_Ext 2'-deoxycytidine 2'-deoxycytidine_Ext 2'-deoxyinosine 2'-deoxyinosine_Ext 2'-deoxyuridine 2'-deoxyuridine_Ext 2-hydroxyglutarate ketoglutarate 3-phospho-D-glycerate 3-p-OH-pyr ABAL GABA GABA_Ext AsnC CodA CodB GabD GabP GabT GdhA GltB GltD GltF L-glutamate L-glutamine MioC MnmG Nac NupC PatD SerA YdcS YdcT YdcU YdcV adenosine adenosine_Ext ammonia asnC asnC-mioC asnC-mioC-mnmG asnC-mioC-mnmG_mRNA asnC-mioC_mRNA asnC_mRNA codBA codBA_mRNA cytidine cytidine_Ext cytosine cytosine_Ext gabDTP gabDTP_mRNA gdhA gdhA_mRNA gltBDF gltBDF_mRNA inosine inosine_Ext isoguanine nac nac_mRNA nupC nupC_mRNA serA serA_mRNA succinate succ-S-ald thymidine thymidine_Ext uracil uridine uridine_Ext xanthine ydcSTUV-patD ydcSTUV-patD_mRNA GltB GltD


Gensor Unit       
Name: Nac
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0009290 - DNA import into cell involved in transformation
GO:0006564 - L-serine biosynthetic process
GO:0019676 - ammonia assimilation cycle
GO:0042450 - arginine biosynthetic process via ornithine
GO:0009102 - biotin biosynthetic process
GO:0006974 - cellular response to DNA damage stimulus
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cellular_component GO:0043190 - ATP-binding cassette (ABC) transporter complex
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
GO:0016020 - membrane
GO:0030288 - outer membrane-bounded periplasmic space
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molecular_function GO:0033737 - 1-pyrroline dehydrogenase activity
GO:0047545 - 2-hydroxyglutarate dehydrogenase activity
GO:0003867 - 4-aminobutyrate transaminase activity
GO:0102480 - 5-fluorocytosine deaminase activity
GO:0005524 - ATP binding
GO:0016887 - ATPase activity
GO:0003700 - DNA binding transcription factor activity
Read more >
Components: Show/Hide Components Table (99 more...)
Function Name Type
simple_molecule (R)-2-hydroxyglutarate simple_molecule
simple_molecule 2-acetamido-5-oxopentanoate simple_molecule
simple_molecule 2-hydroxyglutarate simple_molecule
simple_molecule 3-P-D-glycerate simple_molecule
simple_molecule 5-aminomethyl-2-thiouridine in tRNA simple_molecule
simple_molecule 5-carboxymethylaminomethyl-2-thiouridine in tRNA simple_molecule
simple_molecule 5-carboxymethylaminomethyluridine in tRNA simple_molecule
simple_molecule 7,8-dihydrofolate simple_molecule
simple_molecule A(H2) simple_molecule
simple_molecule ABAL simple_molecule
protein AsnC protein
protein CodA protein
protein CodB protein
protein FeaR protein
simple_molecule GABA simple_molecule
simple_molecule GABA_Ext simple_molecule
protein GabD protein
protein GabP protein
protein GabT protein
protein GdhA protein
protein GltB protein
protein GltD protein
complex GltD-GltB complex
protein GltF protein
simple_molecule L-glutamate simple_molecule
protein MioC protein
protein MnmE protein
complex MnmE-MnmG complex
protein MnmG protein
protein Nac protein
protein NupC protein
protein PatD protein
protein SerA protein
protein YdcS protein
complex YdcS-YdcT-YdcV-YdcU complex
protein YdcT protein
protein YdcU protein
protein YdcV protein
simple_molecule acceptors simple_molecule
simple_molecule acetylornithine simple_molecule
simple_molecule adenosine simple_molecule
simple_molecule adenosine_Ext simple_molecule
simple_molecule ammonium simple_molecule
gene asnC gene
gene asnC-mioC gene
gene asnC-mioC-mnmG gene
RNA asnC-mioC-mnmG_mRNA RNA
RNA asnC-mioC_mRNA RNA
RNA asnC_mRNA RNA
gene codBA gene
RNA codBA_mRNA RNA
simple_molecule cytidine simple_molecule
simple_molecule cytidine_Ext simple_molecule
simple_molecule cytosine simple_molecule
simple_molecule cytosine_Ext simple_molecule
simple_molecule d-cytidine simple_molecule
simple_molecule d-cytidine_Ext simple_molecule
simple_molecule deoxyadenosine simple_molecule
simple_molecule deoxyadenosine_Ext simple_molecule
simple_molecule deoxyinosine simple_molecule
simple_molecule deoxyinosine_Ext simple_molecule
simple_molecule deoxyuridine simple_molecule
simple_molecule deoxyuridine_Ext simple_molecule
gene feaR gene
RNA feaR_mRNA RNA
gene gabDTP gene
RNA gabDTP_mRNA RNA
gene gdhA gene
RNA gdhA_mRNA RNA
gene gltBDF gene
RNA gltBDF_mRNA RNA
simple_molecule glycine simple_molecule
simple_molecule guanosine-diphosphate simple_molecule
simple_molecule guanosine-triphosphate simple_molecule
simple_molecule inosine simple_molecule
simple_molecule inosine_Ext simple_molecule
simple_molecule isoguanine simple_molecule
simple_molecule ketoglutarate simple_molecule
simple_molecule methylene-H4PteGlu(n) simple_molecule
gene nac gene
RNA nac_mRNA RNA
gene nupC gene
RNA nupC_mRNA RNA
simple_molecule phosphate simple_molecule
simple_molecule phosphohydroxypyruate simple_molecule
gene serA gene
RNA serA_mRNA RNA
simple_molecule succ-S-ald simple_molecule
simple_molecule succinate simple_molecule
simple_molecule tRNA 2-thiouridine34 simple_molecule
simple_molecule tRNA uridine34 simple_molecule
simple_molecule thymidine simple_molecule
simple_molecule thymidine_Ext simple_molecule
simple_molecule uracil simple_molecule
simple_molecule uridine simple_molecule
simple_molecule uridine_Ext simple_molecule
simple_molecule xanthine simple_molecule
gene ydcSTUV-patD gene
RNA ydcSTUV-patD_mRNA RNA


Reactions       
Showing 63 reactions
Nac asnC asnC_mRNA
Name: asnC -> asnC_mRNA
Description: Transcription of transcription unit asnC. Reaction inhibition by Nac.
Type: transcription
Pathway Components: asnC - Nac -> asnC_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor Nac protein nd nd
reactant asnC gene nd nd
product asnC_mRNA RNA nd nd
Nac asnC-mioC asnC-mioC_mRNA
Name: asnC-mioC -> asnC-mioC_mRNA
Description: Transcription of transcription unit asnC-mioC. Reaction inhibition by Nac.
Type: transcription
Pathway Components: asnC-mioC - Nac -> asnC-mioC_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor Nac protein nd nd
reactant asnC-mioC gene nd nd
product asnC-mioC_mRNA RNA nd nd
Nac asnC-mioC-mnmG asnC-mioC-mnmG_mRNA
Name: asnC-mioC-mnmG -> asnC-mioC-mnmG_mRNA
Description: Transcription of transcription unit asnC-mioC-mnmG. Reaction inhibition by Nac.
Type: transcription
Pathway Components: asnC-mioC-mnmG - Nac -> asnC-mioC-mnmG_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor Nac protein nd nd
reactant asnC-mioC-mnmG gene nd nd
product asnC-mioC-mnmG_mRNA RNA nd nd
Nac codBA codBA_mRNA
Name: codBA -> codBA_mRNA
Description: Transcription of transcription unit codBA. Reaction activation by Nac.
Type: transcription
Pathway Components: codBA - Nac -> codBA_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Nac protein nd nd
reactant codBA gene nd nd
product codBA_mRNA RNA nd nd
Nac feaR feaR_mRNA
Name: feaR -> feaR_mRNA
Description: Transcription of transcription unit feaR. Reaction activation by Nac.
Type: transcription
Pathway Components: feaR - Nac -> feaR_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Nac protein nd nd
reactant feaR gene nd nd
product feaR_mRNA RNA nd nd
Nac gabDTP gabDTP_mRNA
Name: gabDTP -> gabDTP_mRNA
Description: Transcription of transcription unit gabDTP. Reaction activation by Nac.
Type: transcription
Pathway Components: gabDTP - Nac -> gabDTP_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Nac protein nd nd
reactant gabDTP gene nd nd
product gabDTP_mRNA RNA nd nd
Nac gdhA gdhA_mRNA
Name: gdhA -> gdhA_mRNA
Description: Transcription of transcription unit gdhA. Reaction inhibition by Nac.
Type: transcription
Pathway Components: gdhA - Nac -> gdhA_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor Nac protein nd nd
reactant gdhA gene nd nd
product gdhA_mRNA RNA nd nd
Nac gltBDF gltBDF_mRNA
Name: gltBDF -> gltBDF_mRNA
Description: Transcription of transcription unit gltBDF. Reaction inhibition by Nac.
Type: transcription
Pathway Components: gltBDF - Nac -> gltBDF_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor Nac protein nd nd
reactant gltBDF gene nd nd
product gltBDF_mRNA RNA nd nd
Nac nac nac_mRNA
Name: nac -> nac_mRNA
Description: Transcription of transcription unit nac. Reaction inhibition by Nac.
Type: transcription
Pathway Components: nac - Nac -> nac_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor Nac protein nd nd
reactant nac gene nd nd
product nac_mRNA RNA nd nd
Nac nupC nupC_mRNA
Name: nupC -> nupC_mRNA
Description: Transcription of transcription unit nupC. Reaction activation by Nac.
Type: transcription
Pathway Components: nupC - Nac -> nupC_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Nac protein nd nd
reactant nupC gene nd nd
product nupC_mRNA RNA nd nd
Nac serA serA_mRNA
Name: serA -> serA_mRNA
Description: Transcription of transcription unit serA. Reaction inhibition by Nac.
Type: transcription
Pathway Components: serA - Nac -> serA_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor Nac protein nd nd
reactant serA gene nd nd
product serA_mRNA RNA nd nd
Nac ydcSTUV-patD ydcSTUV-patD_mRNA
Name: ydcSTUV-patD -> ydcSTUV-patD_mRNA
Description: Transcription of transcription unit ydcSTUV-patD. Reaction activation by Nac.
Type: transcription
Pathway Components: ydcSTUV-patD - Nac -> ydcSTUV-patD_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Nac protein nd nd
reactant ydcSTUV-patD gene nd nd
product ydcSTUV-patD_mRNA RNA nd nd
asnC-mioC-mnmG_mRNA AsnC
Name: asnC-mioC-mnmG_mRNA -> AsnC
Description: Translation of AsnC
Type: translation
Pathway Components: asnC-mioC-mnmG_mRNA -> AsnC
Components:
Function Name Type Evidence Reference(s)
product AsnC protein nd nd
reactant asnC-mioC-mnmG_mRNA RNA nd nd
asnC-mioC-mnmG_mRNA MioC
Name: asnC-mioC-mnmG_mRNA -> MioC
Description: Translation of MioC
Type: translation
Pathway Components: asnC-mioC-mnmG_mRNA -> MioC
Components:
Function Name Type Evidence Reference(s)
product MioC protein nd nd
reactant asnC-mioC-mnmG_mRNA RNA nd nd
asnC-mioC-mnmG_mRNA MnmG
Name: asnC-mioC-mnmG_mRNA -> MnmG
Description: Translation of MnmG
Type: translation
Pathway Components: asnC-mioC-mnmG_mRNA -> MnmG
Components:
Function Name Type Evidence Reference(s)
product MnmG protein nd nd
reactant asnC-mioC-mnmG_mRNA RNA nd nd
MnmG + MnmE MnmE-MnmG
Name: MnmG + MnmE -> MnmE-MnmG
Description: Reaction transforming MnmG, MnmE into MnmE-MnmG
Type: state transition
Pathway Components: MnmG + MnmE -> MnmE-MnmG
Components:
Function Name Type Evidence Reference(s)
reactant MnmE protein nd nd
product MnmE-MnmG complex nd nd
reactant MnmG protein nd nd
MnmE-MnmG Reactants Products
Name: guanosine-triphosphate + methylene-H4PteGlu(n) + tRNA uridine34 + acceptors + glycine -> 5-carboxymethylaminomethyluridine in tRNA + guanosine-diphosphate + 7,8-dihydrofolate + phosphate + A(H2)
Description: Reaction transforming guanosine-triphosphate, methylene-H4PteGlu(n), tRNA uridine34, acceptors, glycine into 5-carboxymethylaminomethyluridine in tRNA, guanosine-diphosphate , 7,8-dihydrofolate , phosphate , A(H2)
Type: state transition
Pathway Components: guanosine-triphosphate + methylene-H4PteGlu(n) + tRNA uridine34 + acceptors + glycine - MnmE-MnmG -> 5-carboxymethylaminomethyluridine in tRNA + guanosine-diphosphate + 7,8-dihydrofolate + phosphate + A(H2)
Components: Show/Hide Components Table
MnmE-MnmG Reactants Products
Name: guanosine-triphosphate + methylene-H4PteGlu(n) + tRNA 2-thiouridine34 + glycine -> 5-carboxymethylaminomethyl-2-thiouridine in tRNA + guanosine-diphosphate + 7,8-dihydrofolate + phosphate
Description: Reaction transforming guanosine-triphosphate, methylene-H4PteGlu(n), tRNA 2-thiouridine34, glycine into 5-carboxymethylaminomethyl-2-thiouridine in tRNA, guanosine-diphosphate , 7,8-dihydrofolate , phosphate
Type: state transition
Pathway Components: guanosine-triphosphate + methylene-H4PteGlu(n) + tRNA 2-thiouridine34 + glycine - MnmE-MnmG -> 5-carboxymethylaminomethyl-2-thiouridine in tRNA + guanosine-diphosphate + 7,8-dihydrofolate + phosphate
Components: Show/Hide Components Table
MnmE-MnmG Reactants Products
Name: guanosine-triphosphate + methylene-H4PteGlu(n) + tRNA 2-thiouridine34 + ammonium -> 5-aminomethyl-2-thiouridine in tRNA + guanosine-diphosphate + 7,8-dihydrofolate + phosphate
Description: Reaction transforming guanosine-triphosphate, methylene-H4PteGlu(n), tRNA 2-thiouridine34, ammonium into 5-aminomethyl-2-thiouridine in tRNA, guanosine-diphosphate , 7,8-dihydrofolate , phosphate
Type: state transition
Pathway Components: guanosine-triphosphate + methylene-H4PteGlu(n) + tRNA 2-thiouridine34 + ammonium - MnmE-MnmG -> 5-aminomethyl-2-thiouridine in tRNA + guanosine-diphosphate + 7,8-dihydrofolate + phosphate
Components: Show/Hide Components Table
codBA_mRNA CodB
Name: codBA_mRNA -> CodB
Description: Translation of CodB
Type: translation
Pathway Components: codBA_mRNA -> CodB
Components:
Function Name Type Evidence Reference(s)
product CodB protein nd nd
reactant codBA_mRNA RNA nd nd
CodB cytosine_Ext cytosine
Name: cytosine_Ext -> cytosine
Description: Transport of cytosine_Ext through a bacterial membrane, leading to the presence of cytosine inside the cell.
Type: transport
Pathway Components: cytosine_Ext - CodB -> cytosine
Components:
Function Name Type Evidence Reference(s)
catalyzer CodB protein nd nd
product cytosine simple_molecule nd nd
reactant cytosine_Ext simple_molecule nd nd
codBA_mRNA CodA
Name: codBA_mRNA -> CodA
Description: Translation of CodA
Type: translation
Pathway Components: codBA_mRNA -> CodA
Components:
Function Name Type Evidence Reference(s)
product CodA protein nd nd
reactant codBA_mRNA RNA nd nd
CodA cytosine ammonium + uracil
Name: cytosine -> ammonium + uracil
Description: Reaction transforming cytosine into ammonium, uracil
Type: state transition
Pathway Components: cytosine - CodA -> ammonium + uracil
Components:
Function Name Type Evidence Reference(s)
catalyzer CodA protein nd nd
product ammonium simple_molecule nd nd
reactant cytosine simple_molecule nd nd
product uracil simple_molecule nd nd
CodA isoguanine xanthine + ammonium
Name: isoguanine -> xanthine + ammonium
Description: Reaction transforming isoguanine into xanthine, ammonium
Type: state transition
Pathway Components: isoguanine - CodA -> xanthine + ammonium
Components:
Function Name Type Evidence Reference(s)
catalyzer CodA protein nd nd
product ammonium simple_molecule nd nd
reactant isoguanine simple_molecule nd nd
product xanthine simple_molecule nd nd
serA_mRNA SerA
Name: serA_mRNA -> SerA
Description: Translation of SerA
Type: translation
Pathway Components: serA_mRNA -> SerA
Components:
Function Name Type Evidence Reference(s)
product SerA protein nd nd
reactant serA_mRNA RNA nd nd
(R)-2-hydroxyglutarate 3-P-D-glycerate SerA glycine ketoglutarate phosphohydroxypyruate 2-hydroxyglutarate ketoglutarate
Name: 2-hydroxyglutarate -> ketoglutarate
Description: Reaction transforming 2-hydroxyglutarate into ketoglutarate
Type: state transition
Pathway Components: 2-hydroxyglutarate - SerA - (R)-2-hydroxyglutarate - 3-P-D-glycerate - glycine - ketoglutarate - phosphohydroxypyruate -> ketoglutarate
Components:
Function Name Type Evidence Reference(s)
inhibitor (R)-2-hydroxyglutarate simple_molecule nd nd
reactant 2-hydroxyglutarate simple_molecule nd nd
inhibitor 3-P-D-glycerate simple_molecule nd nd
catalyzer SerA protein nd nd
inhibitor glycine simple_molecule nd nd
inhibitor ketoglutarate simple_molecule nd nd
product ketoglutarate simple_molecule nd nd
inhibitor phosphohydroxypyruate simple_molecule nd nd
SerA glycine 3-P-D-glycerate phosphohydroxypyruate
Name: 3-P-D-glycerate -> phosphohydroxypyruate
Description: Reaction transforming 3-P-D-glycerate into phosphohydroxypyruate
Type: state transition
Pathway Components: 3-P-D-glycerate - SerA - glycine -> phosphohydroxypyruate
Components:
Function Name Type Evidence Reference(s)
reactant 3-P-D-glycerate simple_molecule nd nd
catalyzer SerA protein nd nd
inhibitor glycine simple_molecule nd nd
product phosphohydroxypyruate simple_molecule nd nd
(R)-2-hydroxyglutarate 3-P-D-glycerate SerA glycine ketoglutarate phosphohydroxypyruate (R)-2-hydroxyglutarate ketoglutarate
Name: (R)-2-hydroxyglutarate -> ketoglutarate
Description: Reaction transforming (R)-2-hydroxyglutarate into ketoglutarate
Type: state transition
Pathway Components: (R)-2-hydroxyglutarate - SerA - (R)-2-hydroxyglutarate - 3-P-D-glycerate - glycine - ketoglutarate - phosphohydroxypyruate -> ketoglutarate
Components:
Function Name Type Evidence Reference(s)
inhibitor (R)-2-hydroxyglutarate simple_molecule nd nd
reactant (R)-2-hydroxyglutarate simple_molecule nd nd
inhibitor 3-P-D-glycerate simple_molecule nd nd
catalyzer SerA protein nd nd
inhibitor glycine simple_molecule nd nd
inhibitor ketoglutarate simple_molecule nd nd
product ketoglutarate simple_molecule nd nd
inhibitor phosphohydroxypyruate simple_molecule nd nd
gltBDF_mRNA GltB
Name: gltBDF_mRNA -> GltB
Description: Translation of GltB
Type: translation
Pathway Components: gltBDF_mRNA -> GltB
Components:
Function Name Type Evidence Reference(s)
product GltB protein nd nd
reactant gltBDF_mRNA RNA nd nd
GltB + GltD GltD-GltB
Name: GltB + GltD -> GltD-GltB
Description: Reaction transforming GltB, GltD into GltD-GltB
Type: state transition
Pathway Components: GltB + GltD -> GltD-GltB
Components:
Function Name Type Evidence Reference(s)
reactant GltB protein nd nd
reactant GltD protein nd nd
product GltD-GltB complex nd nd
gltBDF_mRNA GltD
Name: gltBDF_mRNA -> GltD
Description: Translation of GltD
Type: translation
Pathway Components: gltBDF_mRNA -> GltD
Components:
Function Name Type Evidence Reference(s)
product GltD protein nd nd
reactant gltBDF_mRNA RNA nd nd
gltBDF_mRNA GltF
Name: gltBDF_mRNA -> GltF
Description: Translation of GltF
Type: translation
Pathway Components: gltBDF_mRNA -> GltF
Components:
Function Name Type Evidence Reference(s)
product GltF protein nd nd
reactant gltBDF_mRNA RNA nd nd
asnC-mioC_mRNA AsnC
Name: asnC-mioC_mRNA -> AsnC
Description: Translation of AsnC
Type: translation
Pathway Components: asnC-mioC_mRNA -> AsnC
Components:
Function Name Type Evidence Reference(s)
product AsnC protein nd nd
reactant asnC-mioC_mRNA RNA nd nd
asnC-mioC_mRNA MioC
Name: asnC-mioC_mRNA -> MioC
Description: Translation of MioC
Type: translation
Pathway Components: asnC-mioC_mRNA -> MioC
Components:
Function Name Type Evidence Reference(s)
product MioC protein nd nd
reactant asnC-mioC_mRNA RNA nd nd
gdhA_mRNA GdhA
Name: gdhA_mRNA -> GdhA
Description: Translation of GdhA
Type: translation
Pathway Components: gdhA_mRNA -> GdhA
Components:
Function Name Type Evidence Reference(s)
product GdhA protein nd nd
reactant gdhA_mRNA RNA nd nd
GdhA L-glutamate ketoglutarate + ammonium
Name: L-glutamate -> ketoglutarate + ammonium
Description: Reaction transforming L-glutamate into ketoglutarate, ammonium
Type: state transition
Pathway Components: L-glutamate - GdhA -> ketoglutarate + ammonium
Components:
Function Name Type Evidence Reference(s)
catalyzer GdhA protein nd nd
reactant L-glutamate simple_molecule nd nd
product ammonium simple_molecule nd nd
product ketoglutarate simple_molecule nd nd
nupC_mRNA NupC
Name: nupC_mRNA -> NupC
Description: Translation of NupC
Type: translation
Pathway Components: nupC_mRNA -> NupC
Components:
Function Name Type Evidence Reference(s)
product NupC protein nd nd
reactant nupC_mRNA RNA nd nd
NupC deoxyinosine_Ext deoxyinosine
Name: deoxyinosine_Ext -> deoxyinosine
Description: Transport of deoxyinosine_Ext through a bacterial membrane, leading to the presence of deoxyinosine inside the cell.
Type: transport
Pathway Components: deoxyinosine_Ext - NupC -> deoxyinosine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupC protein nd nd
product deoxyinosine simple_molecule nd nd
reactant deoxyinosine_Ext simple_molecule nd nd
NupC inosine_Ext inosine
Name: inosine_Ext -> inosine
Description: Transport of inosine_Ext through a bacterial membrane, leading to the presence of inosine inside the cell.
Type: transport
Pathway Components: inosine_Ext - NupC -> inosine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupC protein nd nd
product inosine simple_molecule nd nd
reactant inosine_Ext simple_molecule nd nd
NupC uridine_Ext uridine
Name: uridine_Ext -> uridine
Description: Transport of uridine_Ext through a bacterial membrane, leading to the presence of uridine inside the cell.
Type: transport
Pathway Components: uridine_Ext - NupC -> uridine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupC protein nd nd
product uridine simple_molecule nd nd
reactant uridine_Ext simple_molecule nd nd
NupC thymidine_Ext thymidine
Name: thymidine_Ext -> thymidine
Description: Transport of thymidine_Ext through a bacterial membrane, leading to the presence of thymidine inside the cell.
Type: transport
Pathway Components: thymidine_Ext - NupC -> thymidine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupC protein nd nd
product thymidine simple_molecule nd nd
reactant thymidine_Ext simple_molecule nd nd
NupC deoxyuridine_Ext deoxyuridine
Name: deoxyuridine_Ext -> deoxyuridine
Description: Transport of deoxyuridine_Ext through a bacterial membrane, leading to the presence of deoxyuridine inside the cell.
Type: transport
Pathway Components: deoxyuridine_Ext - NupC -> deoxyuridine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupC protein nd nd
product deoxyuridine simple_molecule nd nd
reactant deoxyuridine_Ext simple_molecule nd nd
NupC d-cytidine_Ext d-cytidine
Name: d-cytidine_Ext -> d-cytidine
Description: Transport of d-cytidine_Ext through a bacterial membrane, leading to the presence of d-cytidine inside the cell.
Type: transport
Pathway Components: d-cytidine_Ext - NupC -> d-cytidine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupC protein nd nd
product d-cytidine simple_molecule nd nd
reactant d-cytidine_Ext simple_molecule nd nd
NupC deoxyadenosine_Ext deoxyadenosine
Name: deoxyadenosine_Ext -> deoxyadenosine
Description: Transport of deoxyadenosine_Ext through a bacterial membrane, leading to the presence of deoxyadenosine inside the cell.
Type: transport
Pathway Components: deoxyadenosine_Ext - NupC -> deoxyadenosine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupC protein nd nd
product deoxyadenosine simple_molecule nd nd
reactant deoxyadenosine_Ext simple_molecule nd nd
NupC cytidine_Ext cytidine
Name: cytidine_Ext -> cytidine
Description: Transport of cytidine_Ext through a bacterial membrane, leading to the presence of cytidine inside the cell.
Type: transport
Pathway Components: cytidine_Ext - NupC -> cytidine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupC protein nd nd
product cytidine simple_molecule nd nd
reactant cytidine_Ext simple_molecule nd nd
NupC adenosine_Ext adenosine
Name: adenosine_Ext -> adenosine
Description: Transport of adenosine_Ext through a bacterial membrane, leading to the presence of adenosine inside the cell.
Type: transport
Pathway Components: adenosine_Ext - NupC -> adenosine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupC protein nd nd
product adenosine simple_molecule nd nd
reactant adenosine_Ext simple_molecule nd nd
asnC_mRNA AsnC
Name: asnC_mRNA -> AsnC
Description: Translation of AsnC
Type: translation
Pathway Components: asnC_mRNA -> AsnC
Components:
Function Name Type Evidence Reference(s)
product AsnC protein nd nd
reactant asnC_mRNA RNA nd nd
gabDTP_mRNA GabD
Name: gabDTP_mRNA -> GabD
Description: Translation of GabD
Type: translation
Pathway Components: gabDTP_mRNA -> GabD
Components:
Function Name Type Evidence Reference(s)
product GabD protein nd nd
reactant gabDTP_mRNA RNA nd nd
GabD succ-S-ald succinate
Name: succ-S-ald -> succinate
Description: Reaction transforming succ-S-ald into succinate
Type: state transition
Pathway Components: succ-S-ald - GabD -> succinate
Components:
Function Name Type Evidence Reference(s)
catalyzer GabD protein nd nd
reactant succ-S-ald simple_molecule nd nd
product succinate simple_molecule nd nd
gabDTP_mRNA GabT
Name: gabDTP_mRNA -> GabT
Description: Translation of GabT
Type: translation
Pathway Components: gabDTP_mRNA -> GabT
Components:
Function Name Type Evidence Reference(s)
product GabT protein nd nd
reactant gabDTP_mRNA RNA nd nd
GabT ketoglutarate + GABA L-glutamate + succ-S-ald
Name: ketoglutarate + GABA -> L-glutamate + succ-S-ald
Description: Reaction transforming ketoglutarate, GABA into L-glutamate, succ-S-ald
Type: state transition
Pathway Components: ketoglutarate + GABA - GabT -> L-glutamate + succ-S-ald
Components:
Function Name Type Evidence Reference(s)
reactant GABA simple_molecule nd nd
catalyzer GabT protein nd nd
product L-glutamate simple_molecule nd nd
reactant ketoglutarate simple_molecule nd nd
product succ-S-ald simple_molecule nd nd
GabT 2-acetamido-5-oxopentanoate + L-glutamate acetylornithine + ketoglutarate
Name: 2-acetamido-5-oxopentanoate + L-glutamate -> acetylornithine + ketoglutarate
Description: Reaction transforming 2-acetamido-5-oxopentanoate, L-glutamate into acetylornithine, ketoglutarate
Type: state transition
Pathway Components: 2-acetamido-5-oxopentanoate + L-glutamate - GabT -> acetylornithine + ketoglutarate
Components:
Function Name Type Evidence Reference(s)
reactant 2-acetamido-5-oxopentanoate simple_molecule nd nd
catalyzer GabT protein nd nd
reactant L-glutamate simple_molecule nd nd
product acetylornithine simple_molecule nd nd
product ketoglutarate simple_molecule nd nd
gabDTP_mRNA GabP
Name: gabDTP_mRNA -> GabP
Description: Translation of GabP
Type: translation
Pathway Components: gabDTP_mRNA -> GabP
Components:
Function Name Type Evidence Reference(s)
product GabP protein nd nd
reactant gabDTP_mRNA RNA nd nd
GabP GABA_Ext GABA
Name: GABA_Ext -> GABA
Description: Transport of GABA_Ext through a bacterial membrane, leading to the presence of GABA inside the cell.
Type: transport
Pathway Components: GABA_Ext - GabP -> GABA
Components:
Function Name Type Evidence Reference(s)
product GABA simple_molecule nd nd
reactant GABA_Ext simple_molecule nd nd
catalyzer GabP protein nd nd
ydcSTUV-patD_mRNA YdcS
Name: ydcSTUV-patD_mRNA -> YdcS
Description: Translation of YdcS
Type: translation
Pathway Components: ydcSTUV-patD_mRNA -> YdcS
Components:
Function Name Type Evidence Reference(s)
product YdcS protein nd nd
reactant ydcSTUV-patD_mRNA RNA nd nd
YdcT + YdcV + YdcS + YdcU YdcS-YdcT-YdcV-YdcU
Name: YdcT + YdcV + YdcS + YdcU -> YdcS-YdcT-YdcV-YdcU
Description: Reaction transforming YdcT, YdcV, YdcS, YdcU into YdcS-YdcT-YdcV-YdcU
Type: state transition
Pathway Components: YdcT + YdcV + YdcS + YdcU -> YdcS-YdcT-YdcV-YdcU
Components:
Function Name Type Evidence Reference(s)
reactant YdcS protein nd nd
product YdcS-YdcT-YdcV-YdcU complex nd nd
reactant YdcT protein nd nd
reactant YdcU protein nd nd
reactant YdcV protein nd nd
ydcSTUV-patD_mRNA YdcT
Name: ydcSTUV-patD_mRNA -> YdcT
Description: Translation of YdcT
Type: translation
Pathway Components: ydcSTUV-patD_mRNA -> YdcT
Components:
Function Name Type Evidence Reference(s)
product YdcT protein nd nd
reactant ydcSTUV-patD_mRNA RNA nd nd
ydcSTUV-patD_mRNA YdcU
Name: ydcSTUV-patD_mRNA -> YdcU
Description: Translation of YdcU
Type: translation
Pathway Components: ydcSTUV-patD_mRNA -> YdcU
Components:
Function Name Type Evidence Reference(s)
product YdcU protein nd nd
reactant ydcSTUV-patD_mRNA RNA nd nd
ydcSTUV-patD_mRNA YdcV
Name: ydcSTUV-patD_mRNA -> YdcV
Description: Translation of YdcV
Type: translation
Pathway Components: ydcSTUV-patD_mRNA -> YdcV
Components:
Function Name Type Evidence Reference(s)
product YdcV protein nd nd
reactant ydcSTUV-patD_mRNA RNA nd nd
ydcSTUV-patD_mRNA PatD
Name: ydcSTUV-patD_mRNA -> PatD
Description: Translation of PatD
Type: translation
Pathway Components: ydcSTUV-patD_mRNA -> PatD
Components:
Function Name Type Evidence Reference(s)
product PatD protein nd nd
reactant ydcSTUV-patD_mRNA RNA nd nd
PatD ABAL GABA
Name: ABAL -> GABA
Description: Reaction transforming ABAL into GABA
Type: state transition
Pathway Components: ABAL - PatD -> GABA
Components:
Function Name Type Evidence Reference(s)
reactant ABAL simple_molecule nd nd
product GABA simple_molecule nd nd
catalyzer PatD protein nd nd
feaR_mRNA FeaR
Name: feaR_mRNA -> FeaR
Description: Translation of FeaR
Type: translation
Pathway Components: feaR_mRNA -> FeaR
Components:
Function Name Type Evidence Reference(s)
product FeaR protein nd nd
reactant feaR_mRNA RNA nd nd
nac_mRNA Nac
Name: nac_mRNA -> Nac
Description: Translation of Nac
Type: translation
Pathway Components: nac_mRNA -> Nac
Components:
Function Name Type Evidence Reference(s)
product Nac protein nd nd
reactant nac_mRNA RNA nd