RegulonDB RegulonDB

Nac Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
feaR_mRNA d-cytidine_Ext MioC 7,8-dihydrofolate codBA inosine_Ext polyhydroxybutyrate nac_mRNA serA_mRNA cytidine asnC-mioC-mnmG succinate GABA_Ext cytosine_Ext glycine gltBDF_mRNA YdcU GabT GltD codBA_mRNA FeaR YdcT thymidine methylene-H4PteGlu(n) ketoglutarate YdcS MnmG YdcV thymidine_Ext asnC-mioC_mRNA guanosine-diphosphate 5-carboxymethylaminomethyluridine in tRNA 2-hydroxyglutarate 5-carboxymethylaminomethyl-2-thiouridine in tRNA GltB GdhA tRNA 2-thiouridine34 gabDTP YdcT (R)-2-hydroxyglutarate acetylornithine nac acceptors asnC-mioC isoguanine SerA PatD coenzyme A succ-S-ald 5-aminomethyl-2-thiouridine in tRNA ydcSTUV-patD asnC guanosine-triphosphate deoxyinosine GABA uridine_Ext YdcV d-cytidine asnC-mioC-mnmG_mRNA ydcSTUV-patD_mRNA 3-P-D-glycerate deoxyadenosine Nac GabD gabDTP_mRNA adenosine asnC_mRNA cytidine_Ext AsnC tRNA uridine34 MnmE ABAL inosine GabP YdcS feaR MnmG nupC_mRNA cytosine NupC OH-butyryl-CoA ammonium CodB L-glutamate deoxyuridine_Ext uridine MnmE uracil nupC deoxyinosine_Ext GltD GltF serA gltBDF CodA xanthine YdcU gdhA_mRNA adenosine_Ext GltB phosphohydroxypyruate A(H2) 2-acetamido-5-oxopentanoate phosphate deoxyuridine deoxyadenosine_Ext gdhA ammonium glycine methylene-H4PteGlu(n) ammonium


Gensor Unit       
Name: Nac
Classification:
Groups: Transcription
Energy production and conversion
Amino acid transport and metabolism
Coenzyme transport and metabolism
Nucleotide transport and metabolism
Translation, ribosomal structure and biogenesis
Gene Ontology Terms (GO): biological_process GO:0009290 - DNA import into cell involved in transformation
GO:0097054 - L-glutamate biosynthetic process
GO:0006564 - L-serine biosynthetic process
GO:0003333 - amino acid transmembrane transport
GO:0006865 - amino acid transport
GO:0019676 - ammonia assimilation cycle
Read more >
cellular_component GO:0043190 - ATP-binding cassette (ABC) transporter complex
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
GO:0005622 - intracellular
GO:0016020 - membrane
Read more >
molecular_function GO:0033737 - 1-pyrroline dehydrogenase activity
GO:0047545 - 2-hydroxyglutarate dehydrogenase activity
GO:0051538 - 3 iron, 4 sulfur cluster binding
GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0003867 - 4-aminobutyrate transaminase activity
GO:0034386 - 4-aminobutyrate:2-oxoglutarate transaminase activity
GO:0102480 - 5-fluorocytosine deaminase activity
Read more >
Components:
  Function Name Type
  simple_molecule (R)-2-hydroxyglutarate simple_molecule
  simple_molecule 2-acetamido-5-oxopentanoate simple_molecule
  simple_molecule 2-hydroxyglutarate simple_molecule
  simple_molecule 3-P-D-glycerate simple_molecule
  simple_molecule 5-aminomethyl-2-thiouridine in tRNA simple_molecule
  simple_molecule 5-carboxymethylaminomethyl-2-thiouridine in tRNA simple_molecule
  simple_molecule 5-carboxymethylaminomethyluridine in tRNA simple_molecule
  simple_molecule 7,8-dihydrofolate simple_molecule
  simple_molecule A(H2) simple_molecule
  simple_molecule ABAL simple_molecule
  protein AsnC protein
  protein CodA protein
  protein CodB protein
  protein FeaR protein
  simple_molecule GABA simple_molecule
  simple_molecule GABA_Ext simple_molecule
  protein GabD protein
  protein GabP protein
  protein GabT protein
  protein GdhA protein
  protein GltB protein
  protein GltD protein
  complex GltD-GltB complex
  protein GltF protein
  simple_molecule L-glutamate simple_molecule
  protein MioC protein
  protein MnmE protein
  complex MnmE-MnmG complex
  protein MnmG protein
  protein Nac protein
  protein NupC protein
  simple_molecule OH-butyryl-CoA simple_molecule
  protein PatD protein
  protein SerA protein
  protein YdcS protein
  complex YdcS-YdcT-YdcV-YdcU complex
  protein YdcT protein
  protein YdcU protein
  protein YdcV protein
  simple_molecule acceptors simple_molecule
  simple_molecule acetylornithine simple_molecule
  simple_molecule adenosine simple_molecule
  simple_molecule adenosine_Ext simple_molecule
  simple_molecule ammonium simple_molecule
  gene asnC gene
  gene asnC-mioC gene
  gene asnC-mioC-mnmG gene
  RNA asnC-mioC-mnmG_mRNA RNA
  RNA asnC-mioC_mRNA RNA
  RNA asnC_mRNA RNA
  gene codBA gene
  RNA codBA_mRNA RNA
  simple_molecule coenzyme A simple_molecule
  simple_molecule cytidine simple_molecule
  simple_molecule cytidine_Ext simple_molecule
  simple_molecule cytosine simple_molecule
  simple_molecule cytosine_Ext simple_molecule
  simple_molecule d-cytidine simple_molecule
  simple_molecule d-cytidine_Ext simple_molecule
  simple_molecule deoxyadenosine simple_molecule
  simple_molecule deoxyadenosine_Ext simple_molecule
  simple_molecule deoxyinosine simple_molecule
  simple_molecule deoxyinosine_Ext simple_molecule
  simple_molecule deoxyuridine simple_molecule
  simple_molecule deoxyuridine_Ext simple_molecule
  gene feaR gene
  RNA feaR_mRNA RNA
  gene gabDTP gene
  RNA gabDTP_mRNA RNA
  gene gdhA gene
  RNA gdhA_mRNA RNA
  gene gltBDF gene
  RNA gltBDF_mRNA RNA
  simple_molecule glycine simple_molecule
  simple_molecule guanosine-diphosphate simple_molecule
  simple_molecule guanosine-triphosphate simple_molecule
  simple_molecule inosine simple_molecule
  simple_molecule inosine_Ext simple_molecule
  simple_molecule isoguanine simple_molecule
  simple_molecule ketoglutarate simple_molecule
  simple_molecule methylene-H4PteGlu(n) simple_molecule
  gene nac gene
  RNA nac_mRNA RNA
  gene nupC gene
  RNA nupC_mRNA RNA
  simple_molecule phosphate simple_molecule
  simple_molecule phosphohydroxypyruate simple_molecule
  simple_molecule polyhydroxybutyrate simple_molecule
  gene serA gene
  RNA serA_mRNA RNA
  simple_molecule succ-S-ald simple_molecule
  simple_molecule succinate simple_molecule
  simple_molecule tRNA 2-thiouridine34 simple_molecule
  simple_molecule tRNA uridine34 simple_molecule
  simple_molecule thymidine simple_molecule
  simple_molecule thymidine_Ext simple_molecule
  simple_molecule uracil simple_molecule
  simple_molecule uridine simple_molecule
  simple_molecule uridine_Ext simple_molecule
  simple_molecule xanthine simple_molecule
  gene ydcSTUV-patD gene
  RNA ydcSTUV-patD_mRNA RNA


Reactions       
Showing 64 reactions
Nac codBA codBA_mRNA
Name: codBA -> codBA_mRNA
Description: Transcription of transcription unit codBA. Reaction activation by Nac.
Type: transcription
Pathway Components: codBA - Nac -> codBA_mRNA
Components:
Function Name Type
activator Nac protein
reactant codBA gene
product codBA_mRNA RNA
Nac feaR feaR_mRNA
Name: feaR -> feaR_mRNA
Description: Transcription of transcription unit feaR. Reaction activation by Nac.
Type: transcription
Pathway Components: feaR - Nac -> feaR_mRNA
Components:
Function Name Type
activator Nac protein
reactant feaR gene
product feaR_mRNA RNA
Nac gabDTP gabDTP_mRNA
Name: gabDTP -> gabDTP_mRNA
Description: Transcription of transcription unit gabDTP. Reaction activation by Nac.
Type: transcription
Pathway Components: gabDTP - Nac -> gabDTP_mRNA
Components:
Function Name Type
activator Nac protein
reactant gabDTP gene
product gabDTP_mRNA RNA
Nac nupC nupC_mRNA
Name: nupC -> nupC_mRNA
Description: Transcription of transcription unit nupC. Reaction activation by Nac.
Type: transcription
Pathway Components: nupC - Nac -> nupC_mRNA
Components:
Function Name Type
activator Nac protein
reactant nupC gene
product nupC_mRNA RNA
Nac ydcSTUV-patD ydcSTUV-patD_mRNA
Name: ydcSTUV-patD -> ydcSTUV-patD_mRNA
Description: Transcription of transcription unit ydcSTUV-patD. Reaction activation by Nac.
Type: transcription
Pathway Components: ydcSTUV-patD - Nac -> ydcSTUV-patD_mRNA
Components:
Function Name Type
activator Nac protein
reactant ydcSTUV-patD gene
product ydcSTUV-patD_mRNA RNA
Nac asnC asnC_mRNA
Name: asnC -> asnC_mRNA
Description: Transcription of transcription unit asnC. Reaction inhibition by Nac.
Type: transcription
Pathway Components: asnC - Nac -> asnC_mRNA
Components:
Function Name Type
inhibitor Nac protein
reactant asnC gene
product asnC_mRNA RNA
Nac asnC-mioC asnC-mioC_mRNA
Name: asnC-mioC -> asnC-mioC_mRNA
Description: Transcription of transcription unit asnC-mioC. Reaction inhibition by Nac.
Type: transcription
Pathway Components: asnC-mioC - Nac -> asnC-mioC_mRNA
Components:
Function Name Type
inhibitor Nac protein
reactant asnC-mioC gene
product asnC-mioC_mRNA RNA
Nac asnC-mioC-mnmG asnC-mioC-mnmG_mRNA
Name: asnC-mioC-mnmG -> asnC-mioC-mnmG_mRNA
Description: Transcription of transcription unit asnC-mioC-mnmG. Reaction inhibition by Nac.
Type: transcription
Pathway Components: asnC-mioC-mnmG - Nac -> asnC-mioC-mnmG_mRNA
Components:
Function Name Type
inhibitor Nac protein
reactant asnC-mioC-mnmG gene
product asnC-mioC-mnmG_mRNA RNA
Nac gdhA gdhA_mRNA
Name: gdhA -> gdhA_mRNA
Description: Transcription of transcription unit gdhA. Reaction inhibition by Nac.
Type: transcription
Pathway Components: gdhA - Nac -> gdhA_mRNA
Components:
Function Name Type
inhibitor Nac protein
reactant gdhA gene
product gdhA_mRNA RNA
Nac gltBDF gltBDF_mRNA
Name: gltBDF -> gltBDF_mRNA
Description: Transcription of transcription unit gltBDF. Reaction inhibition by Nac.
Type: transcription
Pathway Components: gltBDF - Nac -> gltBDF_mRNA
Components:
Function Name Type
inhibitor Nac protein
reactant gltBDF gene
product gltBDF_mRNA RNA
Nac nac nac_mRNA
Name: nac -> nac_mRNA
Description: Transcription of transcription unit nac. Reaction inhibition by Nac.
Type: transcription
Pathway Components: nac - Nac -> nac_mRNA
Components:
Function Name Type
inhibitor Nac protein
reactant nac gene
product nac_mRNA RNA
Nac serA serA_mRNA
Name: serA -> serA_mRNA
Description: Transcription of transcription unit serA. Reaction inhibition by Nac.
Type: transcription
Pathway Components: serA - Nac -> serA_mRNA
Components:
Function Name Type
inhibitor Nac protein
reactant serA gene
product serA_mRNA RNA
asnC-mioC_mRNA AsnC
Name: asnC-mioC_mRNA -> AsnC
Description: Translation of AsnC
Type: translation
Pathway Components: asnC-mioC_mRNA -> AsnC
Components:
Function Name Type
product AsnC protein
reactant asnC-mioC_mRNA RNA
asnC-mioC_mRNA MioC
Name: asnC-mioC_mRNA -> MioC
Description: Translation of MioC
Type: translation
Pathway Components: asnC-mioC_mRNA -> MioC
Components:
Function Name Type
product MioC protein
reactant asnC-mioC_mRNA RNA
asnC_mRNA AsnC
Name: asnC_mRNA -> AsnC
Description: Translation of AsnC
Type: translation
Pathway Components: asnC_mRNA -> AsnC
Components:
Function Name Type
product AsnC protein
reactant asnC_mRNA RNA
gabDTP_mRNA GabD
Name: gabDTP_mRNA -> GabD
Description: Translation of GabD
Type: translation
Pathway Components: gabDTP_mRNA -> GabD
Components:
Function Name Type
product GabD protein
reactant gabDTP_mRNA RNA
GabD succ-S-ald succinate
Name: succ-S-ald -> succinate
Description: Reaction transforming succ-S-ald into succinate
Type: state transition
Pathway Components: succ-S-ald - GabD -> succinate
Components:
Function Name Type
catalyzer GabD protein
reactant succ-S-ald simple_molecule
product succinate simple_molecule
gabDTP_mRNA GabT
Name: gabDTP_mRNA -> GabT
Description: Translation of GabT
Type: translation
Pathway Components: gabDTP_mRNA -> GabT
Components:
Function Name Type
product GabT protein
reactant gabDTP_mRNA RNA
GabT ketoglutarate + GABA L-glutamate + succ-S-ald
Name: ketoglutarate + GABA -> L-glutamate + succ-S-ald
Description: Reaction transforming ketoglutarate, GABA into L-glutamate, succ-S-ald
Type: state transition
Pathway Components: ketoglutarate + GABA - GabT -> L-glutamate + succ-S-ald
Components:
Function Name Type
reactant GABA simple_molecule
catalyzer GabT protein
product L-glutamate simple_molecule
reactant ketoglutarate simple_molecule
product succ-S-ald simple_molecule
GabT 2-acetamido-5-oxopentanoate + L-glutamate acetylornithine + ketoglutarate
Name: 2-acetamido-5-oxopentanoate + L-glutamate -> acetylornithine + ketoglutarate
Description: Reaction transforming 2-acetamido-5-oxopentanoate, L-glutamate into acetylornithine, ketoglutarate
Type: state transition
Pathway Components: 2-acetamido-5-oxopentanoate + L-glutamate - GabT -> acetylornithine + ketoglutarate
Components:
Function Name Type
reactant 2-acetamido-5-oxopentanoate simple_molecule
catalyzer GabT protein
reactant L-glutamate simple_molecule
product acetylornithine simple_molecule
product ketoglutarate simple_molecule
gabDTP_mRNA GabP
Name: gabDTP_mRNA -> GabP
Description: Translation of GabP
Type: translation
Pathway Components: gabDTP_mRNA -> GabP
Components:
Function Name Type
product GabP protein
reactant gabDTP_mRNA RNA
GabP GABA_Ext GABA
Name: GABA_Ext -> GABA
Description: Transport of GABA_Ext through a bacterial membrane, leading to the presence of GABA inside the cell.
Type: transport
Pathway Components: GABA_Ext - GabP -> GABA
Components:
Function Name Type
product GABA simple_molecule
reactant GABA_Ext simple_molecule
catalyzer GabP protein
serA_mRNA SerA
Name: serA_mRNA -> SerA
Description: Translation of SerA
Type: translation
Pathway Components: serA_mRNA -> SerA
Components:
Function Name Type
product SerA protein
reactant serA_mRNA RNA
SerA glycine 3-P-D-glycerate phosphohydroxypyruate
Name: 3-P-D-glycerate -> phosphohydroxypyruate
Description: Reaction transforming 3-P-D-glycerate into phosphohydroxypyruate
Type: state transition
Pathway Components: 3-P-D-glycerate - SerA - glycine -> phosphohydroxypyruate
Components:
Function Name Type
reactant 3-P-D-glycerate simple_molecule
catalyzer SerA protein
inhibitor glycine simple_molecule
product phosphohydroxypyruate simple_molecule
3-P-D-glycerate SerA glycine ketoglutarate phosphohydroxypyruate (R)-2-hydroxyglutarate ketoglutarate
Name: (R)-2-hydroxyglutarate -> ketoglutarate
Description: Reaction transforming (R)-2-hydroxyglutarate into ketoglutarate
Type: state transition
Pathway Components: (R)-2-hydroxyglutarate - SerA - 3-P-D-glycerate - glycine - ketoglutarate - phosphohydroxypyruate -> ketoglutarate
Components:
Function Name Type
reactant (R)-2-hydroxyglutarate simple_molecule
inhibitor 3-P-D-glycerate simple_molecule
catalyzer SerA protein
inhibitor glycine simple_molecule
inhibitor ketoglutarate simple_molecule
product ketoglutarate simple_molecule
inhibitor phosphohydroxypyruate simple_molecule
3-P-D-glycerate SerA glycine ketoglutarate phosphohydroxypyruate 2-hydroxyglutarate ketoglutarate
Name: 2-hydroxyglutarate -> ketoglutarate
Description: Reaction transforming 2-hydroxyglutarate into ketoglutarate
Type: state transition
Pathway Components: 2-hydroxyglutarate - SerA - 3-P-D-glycerate - glycine - ketoglutarate - phosphohydroxypyruate -> ketoglutarate
Components:
Function Name Type
reactant 2-hydroxyglutarate simple_molecule
inhibitor 3-P-D-glycerate simple_molecule
catalyzer SerA protein
inhibitor glycine simple_molecule
inhibitor ketoglutarate simple_molecule
product ketoglutarate simple_molecule
inhibitor phosphohydroxypyruate simple_molecule
feaR_mRNA FeaR
Name: feaR_mRNA -> FeaR
Description: Translation of FeaR
Type: translation
Pathway Components: feaR_mRNA -> FeaR
Components:
Function Name Type
product FeaR protein
reactant feaR_mRNA RNA
gdhA_mRNA GdhA
Name: gdhA_mRNA -> GdhA
Description: Translation of GdhA
Type: translation
Pathway Components: gdhA_mRNA -> GdhA
Components:
Function Name Type
product GdhA protein
reactant gdhA_mRNA RNA
GdhA L-glutamate ketoglutarate + ammonium
Name: L-glutamate -> ketoglutarate + ammonium
Description: Reaction transforming L-glutamate into ketoglutarate, ammonium
Type: state transition
Pathway Components: L-glutamate - GdhA -> ketoglutarate + ammonium
Components:
Function Name Type
catalyzer GdhA protein
reactant L-glutamate simple_molecule
product ammonium simple_molecule
product ketoglutarate simple_molecule
nac_mRNA Nac
Name: nac_mRNA -> Nac
Description: Translation of Nac
Type: translation
Pathway Components: nac_mRNA -> Nac
Components:
Function Name Type
product Nac protein
reactant nac_mRNA RNA
nupC_mRNA NupC
Name: nupC_mRNA -> NupC
Description: Translation of NupC
Type: translation
Pathway Components: nupC_mRNA -> NupC
Components:
Function Name Type
product NupC protein
reactant nupC_mRNA RNA
NupC deoxyinosine_Ext deoxyinosine
Name: deoxyinosine_Ext -> deoxyinosine
Description: Transport of deoxyinosine_Ext through a bacterial membrane, leading to the presence of deoxyinosine inside the cell.
Type: transport
Pathway Components: deoxyinosine_Ext - NupC -> deoxyinosine
Components:
Function Name Type
catalyzer NupC protein
product deoxyinosine simple_molecule
reactant deoxyinosine_Ext simple_molecule
NupC inosine_Ext inosine
Name: inosine_Ext -> inosine
Description: Transport of inosine_Ext through a bacterial membrane, leading to the presence of inosine inside the cell.
Type: transport
Pathway Components: inosine_Ext - NupC -> inosine
Components:
Function Name Type
catalyzer NupC protein
product inosine simple_molecule
reactant inosine_Ext simple_molecule
NupC uridine_Ext uridine
Name: uridine_Ext -> uridine
Description: Transport of uridine_Ext through a bacterial membrane, leading to the presence of uridine inside the cell.
Type: transport
Pathway Components: uridine_Ext - NupC -> uridine
Components:
Function Name Type
catalyzer NupC protein
product uridine simple_molecule
reactant uridine_Ext simple_molecule
NupC thymidine_Ext thymidine
Name: thymidine_Ext -> thymidine
Description: Transport of thymidine_Ext through a bacterial membrane, leading to the presence of thymidine inside the cell.
Type: transport
Pathway Components: thymidine_Ext - NupC -> thymidine
Components:
Function Name Type
catalyzer NupC protein
product thymidine simple_molecule
reactant thymidine_Ext simple_molecule
NupC deoxyuridine_Ext deoxyuridine
Name: deoxyuridine_Ext -> deoxyuridine
Description: Transport of deoxyuridine_Ext through a bacterial membrane, leading to the presence of deoxyuridine inside the cell.
Type: transport
Pathway Components: deoxyuridine_Ext - NupC -> deoxyuridine
Components:
Function Name Type
catalyzer NupC protein
product deoxyuridine simple_molecule
reactant deoxyuridine_Ext simple_molecule
NupC d-cytidine_Ext d-cytidine
Name: d-cytidine_Ext -> d-cytidine
Description: Transport of d-cytidine_Ext through a bacterial membrane, leading to the presence of d-cytidine inside the cell.
Type: transport
Pathway Components: d-cytidine_Ext - NupC -> d-cytidine
Components:
Function Name Type
catalyzer NupC protein
product d-cytidine simple_molecule
reactant d-cytidine_Ext simple_molecule
NupC deoxyadenosine_Ext deoxyadenosine
Name: deoxyadenosine_Ext -> deoxyadenosine
Description: Transport of deoxyadenosine_Ext through a bacterial membrane, leading to the presence of deoxyadenosine inside the cell.
Type: transport
Pathway Components: deoxyadenosine_Ext - NupC -> deoxyadenosine
Components:
Function Name Type
catalyzer NupC protein
product deoxyadenosine simple_molecule
reactant deoxyadenosine_Ext simple_molecule
NupC cytidine_Ext cytidine
Name: cytidine_Ext -> cytidine
Description: Transport of cytidine_Ext through a bacterial membrane, leading to the presence of cytidine inside the cell.
Type: transport
Pathway Components: cytidine_Ext - NupC -> cytidine
Components:
Function Name Type
catalyzer NupC protein
product cytidine simple_molecule
reactant cytidine_Ext simple_molecule
NupC adenosine_Ext adenosine
Name: adenosine_Ext -> adenosine
Description: Transport of adenosine_Ext through a bacterial membrane, leading to the presence of adenosine inside the cell.
Type: transport
Pathway Components: adenosine_Ext - NupC -> adenosine
Components:
Function Name Type
catalyzer NupC protein
product adenosine simple_molecule
reactant adenosine_Ext simple_molecule
codBA_mRNA CodB
Name: codBA_mRNA -> CodB
Description: Translation of CodB
Type: translation
Pathway Components: codBA_mRNA -> CodB
Components:
Function Name Type
product CodB protein
reactant codBA_mRNA RNA
CodB cytosine_Ext cytosine
Name: cytosine_Ext -> cytosine
Description: Transport of cytosine_Ext through a bacterial membrane, leading to the presence of cytosine inside the cell.
Type: transport
Pathway Components: cytosine_Ext - CodB -> cytosine
Components:
Function Name Type
catalyzer CodB protein
product cytosine simple_molecule
reactant cytosine_Ext simple_molecule
codBA_mRNA CodA
Name: codBA_mRNA -> CodA
Description: Translation of CodA
Type: translation
Pathway Components: codBA_mRNA -> CodA
Components:
Function Name Type
product CodA protein
reactant codBA_mRNA RNA
CodA cytosine ammonium + uracil
Name: cytosine -> ammonium + uracil
Description: Reaction transforming cytosine into ammonium, uracil
Type: state transition
Pathway Components: cytosine - CodA -> ammonium + uracil
Components:
Function Name Type
catalyzer CodA protein
product ammonium simple_molecule
reactant cytosine simple_molecule
product uracil simple_molecule
CodA isoguanine ammonium + xanthine
Name: isoguanine -> ammonium + xanthine
Description: Reaction transforming isoguanine into ammonium, xanthine
Type: state transition
Pathway Components: isoguanine - CodA -> ammonium + xanthine
Components:
Function Name Type
catalyzer CodA protein
product ammonium simple_molecule
reactant isoguanine simple_molecule
product xanthine simple_molecule
gltBDF_mRNA GltB
Name: gltBDF_mRNA -> GltB
Description: Translation of GltB
Type: translation
Pathway Components: gltBDF_mRNA -> GltB
Components:
Function Name Type
product GltB protein
reactant gltBDF_mRNA RNA
GltB + GltD GltD-GltB
Name: GltB + GltD -> GltD-GltB
Description: Reaction transforming GltB, GltD into GltD-GltB
Type: state transition
Pathway Components: GltB + GltD -> GltD-GltB
Components:
Function Name Type
reactant GltB protein
reactant GltD protein
product GltD-GltB complex
gltBDF_mRNA GltD
Name: gltBDF_mRNA -> GltD
Description: Translation of GltD
Type: translation
Pathway Components: gltBDF_mRNA -> GltD
Components:
Function Name Type
product GltD protein
reactant gltBDF_mRNA RNA
gltBDF_mRNA GltF
Name: gltBDF_mRNA -> GltF
Description: Translation of GltF
Type: translation
Pathway Components: gltBDF_mRNA -> GltF
Components:
Function Name Type
product GltF protein
reactant gltBDF_mRNA RNA
asnC-mioC-mnmG_mRNA AsnC
Name: asnC-mioC-mnmG_mRNA -> AsnC
Description: Translation of AsnC
Type: translation
Pathway Components: asnC-mioC-mnmG_mRNA -> AsnC
Components:
Function Name Type
product AsnC protein
reactant asnC-mioC-mnmG_mRNA RNA
asnC-mioC-mnmG_mRNA MioC
Name: asnC-mioC-mnmG_mRNA -> MioC
Description: Translation of MioC
Type: translation
Pathway Components: asnC-mioC-mnmG_mRNA -> MioC
Components:
Function Name Type
product MioC protein
reactant asnC-mioC-mnmG_mRNA RNA
asnC-mioC-mnmG_mRNA MnmG
Name: asnC-mioC-mnmG_mRNA -> MnmG
Description: Translation of MnmG
Type: translation
Pathway Components: asnC-mioC-mnmG_mRNA -> MnmG
Components:
Function Name Type
product MnmG protein
reactant asnC-mioC-mnmG_mRNA RNA
MnmE + MnmG MnmE-MnmG
Name: MnmE + MnmG -> MnmE-MnmG
Description: Reaction transforming MnmE, MnmG into MnmE-MnmG
Type: state transition
Pathway Components: MnmE + MnmG -> MnmE-MnmG
Components:
Function Name Type
reactant MnmE protein
product MnmE-MnmG complex
reactant MnmG protein
MnmE-MnmG Reactants Products
Name: guanosine-triphosphate + methylene-H4PteGlu(n) + tRNA 2-thiouridine34 + acceptors + glycine -> 5-carboxymethylaminomethyl-2-thiouridine in tRNA + guanosine-diphosphate + 7,8-dihydrofolate + phosphate + A(H2)
Description: Reaction transforming guanosine-triphosphate, methylene-H4PteGlu(n), tRNA 2-thiouridine34, acceptors, glycine into 5-carboxymethylaminomethyl-2-thiouridine in tRNA, guanosine-diphosphate , 7,8-dihydrofolate , phosphate , A(H2)
Type: state transition
Pathway Components: guanosine-triphosphate + methylene-H4PteGlu(n) + tRNA 2-thiouridine34 + acceptors + glycine - MnmE-MnmG -> 5-carboxymethylaminomethyl-2-thiouridine in tRNA + guanosine-diphosphate + 7,8-dihydrofolate + phosphate + A(H2)
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MnmE-MnmG Reactants Products
Name: guanosine-triphosphate + methylene-H4PteGlu(n) + tRNA uridine34 + acceptors + glycine -> 5-carboxymethylaminomethyluridine in tRNA + guanosine-diphosphate + 7,8-dihydrofolate + phosphate + A(H2)
Description: Reaction transforming guanosine-triphosphate, methylene-H4PteGlu(n), tRNA uridine34, acceptors, glycine into 5-carboxymethylaminomethyluridine in tRNA, guanosine-diphosphate , 7,8-dihydrofolate , phosphate , A(H2)
Type: state transition
Pathway Components: guanosine-triphosphate + methylene-H4PteGlu(n) + tRNA uridine34 + acceptors + glycine - MnmE-MnmG -> 5-carboxymethylaminomethyluridine in tRNA + guanosine-diphosphate + 7,8-dihydrofolate + phosphate + A(H2)
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MnmE-MnmG Reactants Products
Name: guanosine-triphosphate + methylene-H4PteGlu(n) + tRNA 2-thiouridine34 + ammonium -> 5-aminomethyl-2-thiouridine in tRNA + guanosine-diphosphate + 7,8-dihydrofolate + phosphate
Description: Reaction transforming guanosine-triphosphate, methylene-H4PteGlu(n), tRNA 2-thiouridine34, ammonium into 5-aminomethyl-2-thiouridine in tRNA, guanosine-diphosphate , 7,8-dihydrofolate , phosphate
Type: state transition
Pathway Components: guanosine-triphosphate + methylene-H4PteGlu(n) + tRNA 2-thiouridine34 + ammonium - MnmE-MnmG -> 5-aminomethyl-2-thiouridine in tRNA + guanosine-diphosphate + 7,8-dihydrofolate + phosphate
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ydcSTUV-patD_mRNA YdcS
Name: ydcSTUV-patD_mRNA -> YdcS
Description: Translation of YdcS
Type: translation
Pathway Components: ydcSTUV-patD_mRNA -> YdcS
Components:
Function Name Type
product YdcS protein
reactant ydcSTUV-patD_mRNA RNA
YdcU + YdcT + YdcS + YdcV YdcS-YdcT-YdcV-YdcU
Name: YdcU + YdcT + YdcS + YdcV -> YdcS-YdcT-YdcV-YdcU
Description: Reaction transforming YdcU, YdcT, YdcS, YdcV into YdcS-YdcT-YdcV-YdcU
Type: state transition
Pathway Components: YdcU + YdcT + YdcS + YdcV -> YdcS-YdcT-YdcV-YdcU
Components:
Function Name Type
reactant YdcS protein
product YdcS-YdcT-YdcV-YdcU complex
reactant YdcT protein
reactant YdcU protein
reactant YdcV protein
YdcS polyhydroxybutyrate + OH-butyryl-CoA polyhydroxybutyrate + coenzyme A
Name: polyhydroxybutyrate + OH-butyryl-CoA -> polyhydroxybutyrate + coenzyme A
Description: Reaction transforming polyhydroxybutyrate, OH-butyryl-CoA into polyhydroxybutyrate, coenzyme A
Type: state transition
Pathway Components: polyhydroxybutyrate + OH-butyryl-CoA - YdcS -> polyhydroxybutyrate + coenzyme A
Components:
Function Name Type
reactant OH-butyryl-CoA simple_molecule
catalyzer YdcS protein
product coenzyme A simple_molecule
product polyhydroxybutyrate simple_molecule
reactant polyhydroxybutyrate simple_molecule