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MlrA Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          


Gensor Unit       
Name: MlrA
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0022610 - biological adhesion
GO:2000144 - positive regulation of DNA-templated transcription, initiation
GO:0045893 - positive regulation of transcription, DNA-templated
GO:0071806 - protein transmembrane transport
GO:1900190 - regulation of single-species biofilm formation
GO:0001101 - response to acid chemical
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cellular_component GO:0009279 - cell outer membrane
GO:0005829 - cytosol
GO:0022625 - cytosolic large ribosomal subunit
GO:0005622 - intracellular
GO:0030529 - intracellular ribonucleoprotein complex
GO:0031246 - intrinsic component of periplasmic side of cell outer membrane
GO:0030288 - outer membrane-bounded periplasmic space
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molecular_function GO:0003723 - RNA binding
GO:0000986 - bacterial-type proximal promoter sequence-specific DNA binding
GO:0042802 - identical protein binding
GO:0005515 - protein binding
GO:0019843 - rRNA binding
GO:0003735 - structural constituent of ribosome
GO:0000049 - tRNA binding
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Components: Show/Hide Components Table (52 more...)
Function Name Type
protein CadC protein
simple_molecule CsgA simple_molecule
simple_molecule CsgA_Ext simple_molecule
protein CsgD protein
protein CsgE protein
complex CsgE-CsgG complex
protein CsgF protein
protein CsgG protein
protein IbaG protein
protein MlrA protein
protein RplA protein
complex RplA-RplB-RplC-RplD-RplE-RplF-RplL-RplJ-RplI-RplK-RplM-RplN-RplO-RplP-RplQ-RplR-RplS-RplT-RplU-RplV-RplW-RplX-RplY-RpmA-RpmB-RpmC-RpmD-RpmE-RpmF-RpmG-RpmH-RpmI-RpmJ complex
protein RplB protein
protein RplC protein
protein RplD protein
protein RplE protein
protein RplF protein
protein RplI protein
protein RplJ protein
protein RplK protein
protein RplL protein
protein RplM protein
protein RplN protein
protein RplO protein
protein RplP protein
protein RplQ protein
protein RplR protein
protein RplS protein
protein RplT protein
protein RplU protein
protein RplV protein
protein RplW protein
protein RplX protein
protein RplY protein
protein RpmA protein
protein RpmB protein
protein RpmC protein
protein RpmD protein
protein RpmE protein
protein RpmF protein
protein RpmG protein
protein RpmH protein
protein RpmI protein
protein RpmJ protein
gene cadC gene
RNA cadC_mRNA RNA
gene csgDEFG gene
RNA csgDEFG_mRNA RNA
gene ibaG gene
RNA ibaG_mRNA RNA
gene rplU-rpmA gene
RNA rplU-rpmA_mRNA RNA


Reactions       
Showing 15 reactions
MlrA cadC cadC_mRNA
Name: cadC -> cadC_mRNA
Description: Transcription of transcription unit cadC. Reaction activation by MlrA.
Type: transcription
Pathway Components: cadC - MlrA -> cadC_mRNA
Components:
Function Name Type Evidence Reference(s)
activator MlrA protein nd nd
reactant cadC gene nd nd
product cadC_mRNA RNA nd nd
MlrA csgDEFG csgDEFG_mRNA
Name: csgDEFG -> csgDEFG_mRNA
Description: Transcription of transcription unit csgDEFG. Reaction activation by MlrA.
Type: transcription
Pathway Components: csgDEFG - MlrA -> csgDEFG_mRNA
Components:
Function Name Type Evidence Reference(s)
activator MlrA protein nd nd
reactant csgDEFG gene nd nd
product csgDEFG_mRNA RNA nd nd
MlrA ibaG ibaG_mRNA
Name: ibaG -> ibaG_mRNA
Description: Transcription of transcription unit ibaG. Reaction activation by MlrA.
Type: transcription
Pathway Components: ibaG - MlrA -> ibaG_mRNA
Components:
Function Name Type Evidence Reference(s)
activator MlrA protein nd nd
reactant ibaG gene nd nd
product ibaG_mRNA RNA nd nd
MlrA rplU-rpmA rplU-rpmA_mRNA
Name: rplU-rpmA -> rplU-rpmA_mRNA
Description: Transcription of transcription unit rplU-rpmA. Reaction activation by MlrA.
Type: transcription
Pathway Components: rplU-rpmA - MlrA -> rplU-rpmA_mRNA
Components:
Function Name Type Evidence Reference(s)
activator MlrA protein nd nd
reactant rplU-rpmA gene nd nd
product rplU-rpmA_mRNA RNA nd nd
rplU-rpmA_mRNA RplU
Name: rplU-rpmA_mRNA -> RplU
Description: Translation of RplU
Type: translation
Pathway Components: rplU-rpmA_mRNA -> RplU
Components:
Function Name Type Evidence Reference(s)
product RplU protein nd nd
reactant rplU-rpmA_mRNA RNA nd nd
Protein Monomers Protein complex
Name: RplA + RplU + RplP + RplJ + RpmG + RpmE + RplI + RpmJ + RplM + RplS + RpmF + RplY + RplE + RplK + RplC + RplQ + RplN + RplL + RpmH + RpmI + RpmB + RplO + RplB + RplD + RplX + RplV + RplW + RplT + RplR + RpmC + RplF + RpmD + RpmA -> RplA-RplB-RplC-RplD-RplE-RplF-RplL-RplJ-RplI-RplK-RplM-RplN-RplO-RplP-RplQ-RplR-RplS-RplT-RplU-RplV-RplW-RplX-RplY-RpmA-RpmB-RpmC-RpmD-RpmE-RpmF-RpmG-RpmH-RpmI-RpmJ
Description: Reaction transforming RplA, RplU, RplP, RplJ, RpmG, RpmE, RplI, RpmJ, RplM, RplS, RpmF, RplY, RplE, RplK, RplC, RplQ, RplN, RplL, RpmH, RpmI, RpmB, RplO, RplB, RplD, RplX, RplV, RplW, RplT, RplR, RpmC, RplF, RpmD, RpmA into RplA-RplB-RplC-RplD-RplE-RplF-RplL-RplJ-RplI-RplK-RplM-RplN-RplO-RplP-RplQ-RplR-RplS-RplT-RplU-RplV-RplW-RplX-RplY-RpmA-RpmB-RpmC-RpmD-RpmE-RpmF-RpmG-RpmH-RpmI-RpmJ
Type: state transition
Pathway Components: RplA + RplU + RplP + RplJ + RpmG + RpmE + RplI + RpmJ + RplM + RplS + RpmF + RplY + RplE + RplK + RplC + RplQ + RplN + RplL + RpmH + RpmI + RpmB + RplO + RplB + RplD + RplX + RplV + RplW + RplT + RplR + RpmC + RplF + RpmD + RpmA -> RplA-RplB-RplC-RplD-RplE-RplF-RplL-RplJ-RplI-RplK-RplM-RplN-RplO-RplP-RplQ-RplR-RplS-RplT-RplU-RplV-RplW-RplX-RplY-RpmA-RpmB-RpmC-RpmD-RpmE-RpmF-RpmG-RpmH-RpmI-RpmJ
Components: Show/Hide Components Table
rplU-rpmA_mRNA RpmA
Name: rplU-rpmA_mRNA -> RpmA
Description: Translation of RpmA
Type: translation
Pathway Components: rplU-rpmA_mRNA -> RpmA
Components:
Function Name Type Evidence Reference(s)
product RpmA protein nd nd
reactant rplU-rpmA_mRNA RNA nd nd
cadC_mRNA CadC
Name: cadC_mRNA -> CadC
Description: Translation of CadC
Type: translation
Pathway Components: cadC_mRNA -> CadC
Components:
Function Name Type Evidence Reference(s)
product CadC protein nd nd
reactant cadC_mRNA RNA nd nd
csgDEFG_mRNA CsgD
Name: csgDEFG_mRNA -> CsgD
Description: Translation of CsgD
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgD
Components:
Function Name Type Evidence Reference(s)
product CsgD protein nd nd
reactant csgDEFG_mRNA RNA nd nd
csgDEFG_mRNA CsgE
Name: csgDEFG_mRNA -> CsgE
Description: Translation of CsgE
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgE
Components:
Function Name Type Evidence Reference(s)
product CsgE protein nd nd
reactant csgDEFG_mRNA RNA nd nd
CsgG + CsgE CsgE-CsgG
Name: CsgG + CsgE -> CsgE-CsgG
Description: Reaction transforming CsgG, CsgE into CsgE-CsgG
Type: state transition
Pathway Components: CsgG + CsgE -> CsgE-CsgG
Components:
Function Name Type Evidence Reference(s)
reactant CsgE protein nd nd
product CsgE-CsgG complex nd nd
reactant CsgG protein nd nd
CsgE-CsgG CsgA_Ext CsgA
Name: CsgA_Ext -> CsgA
Description: Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the cell.
Type: transport
Pathway Components: CsgA_Ext - CsgE-CsgG -> CsgA
Components:
Function Name Type Evidence Reference(s)
product CsgA simple_molecule nd nd
reactant CsgA_Ext simple_molecule nd nd
catalyzer CsgE-CsgG complex nd nd
csgDEFG_mRNA CsgF
Name: csgDEFG_mRNA -> CsgF
Description: Translation of CsgF
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgF
Components:
Function Name Type Evidence Reference(s)
product CsgF protein nd nd
reactant csgDEFG_mRNA RNA nd nd
csgDEFG_mRNA CsgG
Name: csgDEFG_mRNA -> CsgG
Description: Translation of CsgG
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgG
Components:
Function Name Type Evidence Reference(s)
product CsgG protein nd nd
reactant csgDEFG_mRNA RNA nd nd
ibaG_mRNA IbaG
Name: ibaG_mRNA -> IbaG
Description: Translation of IbaG
Type: translation
Pathway Components: ibaG_mRNA -> IbaG
Components:
Function Name Type Evidence Reference(s)
product IbaG protein nd nd
reactant ibaG_mRNA RNA nd nd



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