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IdnR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          


Gensor Unit       
Name: IdnR
Classification:
Groups: GUs related to carbon source utilization
Gene Ontology Terms (GO): GO:0008270 - zinc ion binding
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0016020 - membrane
GO:0016491 - oxidoreductase activity
GO:0015725 - gluconate transport
GO:0015128 - gluconate transmembrane transporter activity
GO:0005402 - cation:sugar symporter activity
GO:0005737 - cytoplasm
GO:0005887 - integral component of plasma membrane
GO:0016310 - phosphorylation
GO:0003677 - DNA binding
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Components:
Function Name Type
simple molecule idonate simple molecule


Reactions       
Showing 18 reactions
5-ketogluconate + IdnR IdnR-5-ketogluconate
Name: 5-ketogluconate + IdnR -> IdnR-5-ketogluconate
Description: Reaction transforming 5-ketogluconate, IdnR into IdnR-5-ketogluconate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant IdnR protein nd nd
reactant 5-ketogluconate simple molecule nd nd
product IdnR-5-ketogluconate complex nd nd
idnDOTR idnDOTR_mRNA
Name: idnDOTR -> idnDOTR_mRNA
Description: Transcription of transcription unit idnDOTR; reaction inhibition by GntR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product idnDOTR_mRNA RNA nd nd
reactant idnDOTR operon nd nd
idnK idnK_mRNA
Name: idnK -> idnK_mRNA
Description: Transcription of transcription unit idnK; reaction inhibition by GntR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product idnK_mRNA RNA nd nd
reactant idnK operon nd nd
gntRKU gntRKU_mRNA
Name: gntRKU -> gntRKU_mRNA
Description: Transcription of transcription unit gntRKU; reaction inhibition by GntR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product gntRKU_mRNA RNA nd nd
reactant gntRKU operon nd nd
idonate + IdnR IdnR-idonate
Name: idonate + IdnR -> IdnR-idonate
Description: Reaction transforming idonate, IdnR into IdnR-idonate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant idonate simple molecule nd nd
product IdnR-idonate complex nd nd
reactant IdnR protein nd nd
gntK gntK_mRNA
Name: gntK -> gntK_mRNA
Description: Transcription of transcription unit gntK; reaction inhibition by GntR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant gntK operon nd nd
product gntK_mRNA RNA nd nd
gntKU gntKU_mRNA
Name: gntKU -> gntKU_mRNA
Description: Transcription of transcription unit gntKU; reaction inhibition by GntR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant gntKU operon nd nd
product gntKU_mRNA RNA nd nd
idnK_mRNA IdnK
Name: idnK_mRNA -> IdnK
Description: Translation of IdnK
Type: translation
Components:
Function Name Type Evidence Reference(s)
product idnK_mRNA RNA nd nd
reactant idnK_mRNA RNA nd nd
idnDOTR_mRNA IdnD
Name: idnDOTR_mRNA -> IdnD
Description: Translation of IdnD
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant idnDOTR_mRNA RNA nd nd
product idnDOTR_mRNA RNA nd nd
idnDOTR_mRNA IdnO
Name: idnDOTR_mRNA -> IdnO
Description: Translation of IdnO
Type: translation
Components:
Function Name Type Evidence Reference(s)
product idnDOTR_mRNA RNA nd nd
reactant idnDOTR_mRNA RNA nd nd
idnDOTR_mRNA IdnT
Name: idnDOTR_mRNA -> IdnT
Description: Translation of IdnT
Type: translation
Components:
Function Name Type Evidence Reference(s)
product idnDOTR_mRNA RNA nd nd
reactant idnDOTR_mRNA RNA nd nd
idnDOTR_mRNA IdnR
Name: idnDOTR_mRNA -> IdnR
Description: Translation of IdnR
Type: translation
Components:
Function Name Type Evidence Reference(s)
product idnDOTR_mRNA RNA nd nd
reactant idnDOTR_mRNA RNA nd nd
gntKU_mRNA GntK
Name: gntKU_mRNA -> GntK
Description: Translation of GntK
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gntKU_mRNA RNA nd nd
product gntKU_mRNA RNA nd nd
gntKU_mRNA GntU
Name: gntKU_mRNA -> GntU
Description: Translation of GntU
Type: translation
Components:
Function Name Type Evidence Reference(s)
product gntKU_mRNA RNA nd nd
reactant gntKU_mRNA RNA nd nd
gntRKU_mRNA GntU
Name: gntRKU_mRNA -> GntU
Description: Translation of GntU
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gntRKU_mRNA RNA nd nd
product gntRKU_mRNA RNA nd nd
gntRKU_mRNA GntK
Name: gntRKU_mRNA -> GntK
Description: Translation of GntK
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gntRKU_mRNA RNA nd nd
product gntRKU_mRNA RNA nd nd
gntRKU_mRNA GntR
Name: gntRKU_mRNA -> GntR
Description: Translation of GntR
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GntR protein nd nd
reactant gntRKU_mRNA RNA nd nd
gntK_mRNA GntK
Name: gntK_mRNA -> GntK
Description: Translation of GntK
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gntK_mRNA RNA nd nd
product gntK_mRNA RNA nd nd



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