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HyfR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
FocB H2 HyfA HyfB HyfC HyfD HyfE HyfF HyfG HyfH HyfI HyfJ HyfR electron hyfABCDEFGHIJR-focB hyfABCDEFGHIJR-focB_mRNA HyfG HyfI HyfA HyfB HyfC HyfD HyfE HyfF HyfH


Gensor Unit       
Name: HyfR
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0006352 - DNA-templated transcription, initiation
GO:0006974 - cellular response to DNA damage stimulus
GO:0015724 - formate transport
GO:0015707 - nitrite transport
GO:2000142 - regulation of DNA-templated transcription, initiation
GO:0006212 - uracil catabolic process
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cellular_component GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
GO:0005622 - intracellular
GO:0005886 - plasma membrane
molecular_function GO:0003677 - DNA binding
GO:0008137 - NADH dehydrogenase (ubiquinone) activity
GO:0015499 - formate transmembrane transporter activity
GO:0015513 - high-affinity secondary active nitrite transmembrane transporter activity
GO:0005515 - protein binding
GO:0022857 - transmembrane transporter activity
Components: Show/Hide Components Table (17 more...)
Function Name Type
protein FocB protein
protein HyfA protein
protein HyfB protein
protein HyfC protein
protein HyfD protein
protein HyfE protein
protein HyfF protein
protein HyfG protein
complex HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH complex
protein HyfH protein
protein HyfI protein
protein HyfJ protein
protein HyfR protein
simple_molecule electron simple_molecule
simple_molecule hydrogen simple_molecule
gene hyfABCDEFGHIJR-focB gene
RNA hyfABCDEFGHIJR-focB_mRNA RNA


Reactions       
Showing 15 reactions
HyfR hyfABCDEFGHIJR-focB hyfABCDEFGHIJR-focB_mRNA
Name: hyfABCDEFGHIJR-focB -> hyfABCDEFGHIJR-focB_mRNA
Description: Transcription of transcription unit hyfABCDEFGHIJR-focB. Reaction activation by HyfR.
Type: transcription
Pathway Components: hyfABCDEFGHIJR-focB - HyfR -> hyfABCDEFGHIJR-focB_mRNA
Components:
Function Name Type Evidence Reference(s)
activator HyfR protein nd nd
reactant hyfABCDEFGHIJR-focB gene nd nd
product hyfABCDEFGHIJR-focB_mRNA RNA nd nd
hyfABCDEFGHIJR-focB_mRNA HyfA
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfA
Description: Translation of HyfA
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfA
Components:
Function Name Type Evidence Reference(s)
product HyfA protein nd nd
reactant hyfABCDEFGHIJR-focB_mRNA RNA nd nd
Protein Monomers HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH
Name: HyfG + HyfH + HyfC + HyfB + HyfE + HyfI + HyfF + HyfA + HyfD -> HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH
Description: Reaction transforming HyfG, HyfH, HyfC, HyfB, HyfE, HyfI, HyfF, HyfA, HyfD into HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH
Type: state transition
Pathway Components: HyfG + HyfH + HyfC + HyfB + HyfE + HyfI + HyfF + HyfA + HyfD -> HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH
Components: Show/Hide Components Table
HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH electron hydrogen
Name: electron -> hydrogen
Description: Reaction transforming electron into hydrogen
Type: state transition
Pathway Components: electron - HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH -> hydrogen
Components:
Function Name Type Evidence Reference(s)
catalyzer HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH complex nd nd
reactant electron simple_molecule nd nd
product hydrogen simple_molecule nd nd
hyfABCDEFGHIJR-focB_mRNA HyfB
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfB
Description: Translation of HyfB
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfB
Components:
Function Name Type Evidence Reference(s)
product HyfB protein nd nd
reactant hyfABCDEFGHIJR-focB_mRNA RNA nd nd
hyfABCDEFGHIJR-focB_mRNA HyfC
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfC
Description: Translation of HyfC
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfC
Components:
Function Name Type Evidence Reference(s)
product HyfC protein nd nd
reactant hyfABCDEFGHIJR-focB_mRNA RNA nd nd
hyfABCDEFGHIJR-focB_mRNA HyfD
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfD
Description: Translation of HyfD
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfD
Components:
Function Name Type Evidence Reference(s)
product HyfD protein nd nd
reactant hyfABCDEFGHIJR-focB_mRNA RNA nd nd
hyfABCDEFGHIJR-focB_mRNA HyfE
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfE
Description: Translation of HyfE
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfE
Components:
Function Name Type Evidence Reference(s)
product HyfE protein nd nd
reactant hyfABCDEFGHIJR-focB_mRNA RNA nd nd
hyfABCDEFGHIJR-focB_mRNA HyfF
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfF
Description: Translation of HyfF
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfF
Components:
Function Name Type Evidence Reference(s)
product HyfF protein nd nd
reactant hyfABCDEFGHIJR-focB_mRNA RNA nd nd
hyfABCDEFGHIJR-focB_mRNA HyfG
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfG
Description: Translation of HyfG
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfG
Components:
Function Name Type Evidence Reference(s)
product HyfG protein nd nd
reactant hyfABCDEFGHIJR-focB_mRNA RNA nd nd
hyfABCDEFGHIJR-focB_mRNA HyfH
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfH
Description: Translation of HyfH
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfH
Components:
Function Name Type Evidence Reference(s)
product HyfH protein nd nd
reactant hyfABCDEFGHIJR-focB_mRNA RNA nd nd
hyfABCDEFGHIJR-focB_mRNA HyfI
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfI
Description: Translation of HyfI
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfI
Components:
Function Name Type Evidence Reference(s)
product HyfI protein nd nd
reactant hyfABCDEFGHIJR-focB_mRNA RNA nd nd
hyfABCDEFGHIJR-focB_mRNA HyfJ
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfJ
Description: Translation of HyfJ
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfJ
Components:
Function Name Type Evidence Reference(s)
product HyfJ protein nd nd
reactant hyfABCDEFGHIJR-focB_mRNA RNA nd nd
hyfABCDEFGHIJR-focB_mRNA HyfR
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfR
Description: Translation of HyfR
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfR
Components:
Function Name Type Evidence Reference(s)
product HyfR protein nd nd
reactant hyfABCDEFGHIJR-focB_mRNA RNA nd nd
hyfABCDEFGHIJR-focB_mRNA FocB
Name: hyfABCDEFGHIJR-focB_mRNA -> FocB
Description: Translation of FocB
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> FocB
Components:
Function Name Type Evidence Reference(s)
product FocB protein nd nd
reactant hyfABCDEFGHIJR-focB_mRNA RNA nd nd



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