RegulonDB RegulonDB

HU Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
GalE GalK GalM GalT HU L-tryptophan L-tryptophan_Ext L-tyrosine L-tyrosine_Ext This Gensor Unit is not yet available Mtr Pgm SeqA TyrP UDP-alpha-D-glucose UDP-alpha-D-galactose alpha-D-galactose alpha-D-galactose 1-phosphate alpha-D-glucose 1-phosphate alpha-D-glucose-6-P beta-D-galactose galETKM galETKM_mRNA indole indole_Ext micF micF_mRNA mtr mtr_mRNA seqA-pgm seqA-pgm_mRNA tyrP tyrP_mRNA


Gensor Unit       
Name: HU
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0050662 - coenzyme binding
GO:0008270 - zinc ion binding
GO:0019318 - hexose metabolic process
GO:0003824 - catalytic activity
GO:0016020 - membrane
GO:0016868 - intramolecular transferase activity, phosphotransferases
GO:0044237 - cellular metabolic process
GO:0022804 - active transmembrane transporter activity
GO:0005737 - cytoplasm
GO:0005887 - integral component of plasma membrane
GO:0016310 - phosphorylation
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Components:
Function Name Type
RNA tyrP_mRNA RNA


Reactions       
Showing 23 reactions
galETKM galETKM_mRNA
Name: galETKM -> galETKM_mRNA
Description: Transcription of transcription unit galETKM; reaction inhibition by HU.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product galETKM_mRNA RNA nd nd
reactant galETKM gene nd nd
micF micF_mRNA
Name: micF -> micF_mRNA
Description: Transcription of transcription unit micF; reaction activation by HU.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product micF_mRNA RNA nd nd
reactant micF gene nd nd
mtr mtr_mRNA
Name: mtr -> mtr_mRNA
Description: Transcription of transcription unit mtr; reaction inhibition by HU.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant mtr gene nd nd
product mtr_mRNA RNA nd nd
seqA-pgm seqA-pgm_mRNA
Name: seqA-pgm -> seqA-pgm_mRNA
Description: Transcription of transcription unit seqA-pgm; reaction inhibition by HU.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product seqA-pgm_mRNA RNA nd nd
reactant seqA-pgm gene nd nd
tyrP tyrP_mRNA
Name: tyrP -> tyrP_mRNA
Description: Transcription of transcription unit tyrP; reaction inhibition by HU.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product tyrP_mRNA RNA nd nd
reactant tyrP gene nd nd
seqA-pgm_mRNA SeqA
Name: seqA-pgm_mRNA -> SeqA
Description: Translation of SeqA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant seqA-pgm_mRNA RNA nd nd
product SeqA protein nd nd
seqA-pgm_mRNA Pgm
Name: seqA-pgm_mRNA -> Pgm
Description: Translation of Pgm
Type: translation
Components:
Function Name Type Evidence Reference(s)
product Pgm protein nd nd
reactant seqA-pgm_mRNA RNA nd nd
alpha-D-glucose 1-phosphate alpha-D-glucose-6-P
Name: alpha-D-glucose 1-phosphate -> alpha-D-glucose-6-P
Description: Reaction transforming alpha-D-glucose 1-phosphate into alpha-D-glucose-6-P
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant alpha-D-glucose 1-phosphate simple molecule nd nd
product alpha-D-glucose-6-P simple molecule nd nd
tyrP_mRNA TyrP
Name: tyrP_mRNA -> TyrP
Description: Translation of TyrP
Type: translation
Components:
Function Name Type Evidence Reference(s)
product TyrP protein nd nd
reactant tyrP_mRNA RNA nd nd
L-tyrosine_Ext L-tyrosine
Name: L-tyrosine_Ext -> L-tyrosine
Description: Transport of L-tyrosine_Ext through a bacterial membrane, leading to the presence of L-tyrosine inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product L-tyrosine simple molecule nd nd
reactant L-tyrosine_Ext simple molecule nd nd
galETKM_mRNA GalT
Name: galETKM_mRNA -> GalT
Description: Translation of GalT
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant galETKM_mRNA RNA nd nd
product GalT protein nd nd
UDPG + alpha-D-galactose 1-phosphate UDP-alpha-D-galactose + alpha-D-glucose 1-phosphate
Name: UDPG + alpha-D-galactose 1-phosphate -> UDP-alpha-D-galactose + alpha-D-glucose 1-phosphate
Description: Reaction transforming UDPG, alpha-D-galactose 1-phosphate into UDP-alpha-D-galactose, alpha-D-glucose 1-phosphate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant UDPG simple molecule nd nd
product alpha-D-glucose 1-phosphate simple molecule nd nd
product UDP-alpha-D-galactose simple molecule nd nd
reactant alpha-D-galactose 1-phosphate simple molecule nd nd
galETKM_mRNA GalE
Name: galETKM_mRNA -> GalE
Description: Translation of GalE
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant galETKM_mRNA RNA nd nd
product GalE protein nd nd
UDPG UDP-alpha-D-galactose
Name: UDPG -> UDP-alpha-D-galactose
Description: Reaction transforming UDPG into UDP-alpha-D-galactose
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant UDPG simple molecule nd nd
product UDP-alpha-D-galactose simple molecule nd nd
mtr_mRNA Mtr
Name: mtr_mRNA -> Mtr
Description: Translation of Mtr
Type: translation
Components:
Function Name Type Evidence Reference(s)
product Mtr protein nd nd
reactant mtr_mRNA RNA nd nd
indole_Ext indole
Name: indole_Ext -> indole
Description: Transport of indole_Ext through a bacterial membrane, leading to the presence of indole inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant indole_Ext simple molecule nd nd
product indole simple molecule nd nd
L-tryptophan_Ext L-tryptophan
Name: L-tryptophan_Ext -> L-tryptophan
Description: Transport of L-tryptophan_Ext through a bacterial membrane, leading to the presence of L-tryptophan inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant L-tryptophan_Ext simple molecule nd nd
product L-tryptophan simple molecule nd nd
galETKM_mRNA GalK
Name: galETKM_mRNA -> GalK
Description: Translation of GalK
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GalK protein nd nd
reactant galETKM_mRNA RNA nd nd
alpha-D-galactose alpha-D-galactose 1-phosphate
Name: alpha-D-galactose -> alpha-D-galactose 1-phosphate
Description: Reaction transforming alpha-D-galactose into alpha-D-galactose 1-phosphate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product alpha-D-galactose 1-phosphate simple molecule nd nd
reactant alpha-D-galactose simple molecule nd nd
micF_mRNA MicF small regulatory RNA
Name: micF_mRNA -> MicF small regulatory RNA
Description: Translation of MicF small regulatory RNA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant micF_mRNA RNA nd nd
product MicF small regulatory RNA RNA nd nd
galETKM_mRNA GalM
Name: galETKM_mRNA -> GalM
Description: Translation of GalM
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GalM protein nd nd
reactant galETKM_mRNA RNA nd nd
beta-D-galactose alpha-D-galactose
Name: beta-D-galactose -> alpha-D-galactose
Description: Reaction transforming beta-D-galactose into alpha-D-galactose
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant beta-D-galactose simple molecule nd nd
product alpha-D-galactose simple molecule nd nd
alpha-D-glucose 1-phosphate UDPG
Name: alpha-D-glucose 1-phosphate -> UDPG
Description: Transformation of alpha-D-glucose 1-phosphate into UDPG by one, or two/three reactions not shown.
Type: super-reaction
Components:
Function Name Type Evidence Reference(s)
product UDPG simple molecule nd nd
reactant alpha-D-glucose 1-phosphate simple molecule nd nd



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