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HU Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          


Gensor Unit       
Name: HU
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0003333 - amino acid transmembrane transport
GO:0005975 - carbohydrate metabolic process
GO:0046835 - carbohydrate phosphorylation
GO:0009242 - colanic acid biosynthetic process
GO:0019388 - galactose catabolic process
GO:0033499 - galactose catabolic process via UDP-galactose
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cellular_component GO:1990097 - SeqA-DNA complex
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0005887 - integral component of plasma membrane
GO:0005886 - plasma membrane
molecular_function GO:0003688 - DNA replication origin binding
GO:0070403 - NAD+ binding
GO:0003978 - UDP-glucose 4-epimerase activity
GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity
GO:0022804 - active transmembrane transporter activity
GO:0004034 - aldose 1-epimerase activity
GO:0010385 - double-stranded methylated DNA binding
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Components: Show/Hide Components Table (42 more...)
Function Name Type
simple_molecule α-D-galactose simple_molecule
simple_molecule α-glucose 1,6-bisphosphate simple_molecule
simple_molecule D-glucose 1-phosphate simple_molecule
protein GalE protein
protein GalK protein
protein GalM protein
protein GalT protein
protein HU protein
protein Mtr protein
protein Pgm protein
protein RNA:MicF protein
protein SeqA protein
protein TyrP protein
simple_molecule UDP-galactose simple_molecule
simple_molecule UDPG simple_molecule
simple_molecule beta-D-galactose simple_molecule
gene galE gene
gene galET gene
gene galETK gene
gene galETKM gene
RNA galETKM_mRNA RNA
RNA galETK_mRNA RNA
RNA galET_mRNA RNA
RNA galE_mRNA RNA
simple_molecule galactose-1-P simple_molecule
simple_molecule glucose-6-P simple_molecule
simple_molecule indole simple_molecule
simple_molecule indole_Ext simple_molecule
gene micF gene
RNA micF_mRNA RNA
gene mtr gene
RNA mtr_mRNA RNA
simple_molecule phosphoglucomutase simple_molecule
simple_molecule phosphorylated phosphoglucomutase simple_molecule
gene seqA-pgm gene
RNA seqA-pgm_mRNA RNA
simple_molecule tryptophan simple_molecule
simple_molecule tryptophan_Ext simple_molecule
gene tyrP gene
RNA tyrP_mRNA RNA
simple_molecule tyrosine simple_molecule
simple_molecule tyrosine_Ext simple_molecule


Reactions       
Showing 33 reactions
HU galE galE_mRNA
Name: galE -> galE_mRNA
Description: Transcription of transcription unit galE. Reaction inhibition by HU.
Type: transcription
Pathway Components: galE - HU -> galE_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor HU protein nd nd
reactant galE gene nd nd
product galE_mRNA RNA nd nd
HU galET galET_mRNA
Name: galET -> galET_mRNA
Description: Transcription of transcription unit galET. Reaction inhibition by HU.
Type: transcription
Pathway Components: galET - HU -> galET_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor HU protein nd nd
reactant galET gene nd nd
product galET_mRNA RNA nd nd
HU galETK galETK_mRNA
Name: galETK -> galETK_mRNA
Description: Transcription of transcription unit galETK. Reaction inhibition by HU.
Type: transcription
Pathway Components: galETK - HU -> galETK_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor HU protein nd nd
reactant galETK gene nd nd
product galETK_mRNA RNA nd nd
HU galETKM galETKM_mRNA
Name: galETKM -> galETKM_mRNA
Description: Transcription of transcription unit galETKM. Reaction inhibition by HU.
Type: transcription
Pathway Components: galETKM - HU -> galETKM_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor HU protein nd nd
reactant galETKM gene nd nd
product galETKM_mRNA RNA nd nd
HU micF micF_mRNA
Name: micF -> micF_mRNA
Description: Transcription of transcription unit micF. Reaction activation by HU.
Type: transcription
Pathway Components: micF - HU -> micF_mRNA
Components:
Function Name Type Evidence Reference(s)
activator HU protein nd nd
reactant micF gene nd nd
product micF_mRNA RNA nd nd
HU mtr mtr_mRNA
Name: mtr -> mtr_mRNA
Description: Transcription of transcription unit mtr. Reaction inhibition by HU.
Type: transcription
Pathway Components: mtr - HU -> mtr_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor HU protein nd nd
reactant mtr gene nd nd
product mtr_mRNA RNA nd nd
HU seqA-pgm seqA-pgm_mRNA
Name: seqA-pgm -> seqA-pgm_mRNA
Description: Transcription of transcription unit seqA-pgm. Reaction inhibition by HU.
Type: transcription
Pathway Components: seqA-pgm - HU -> seqA-pgm_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor HU protein nd nd
reactant seqA-pgm gene nd nd
product seqA-pgm_mRNA RNA nd nd
HU tyrP tyrP_mRNA
Name: tyrP -> tyrP_mRNA
Description: Transcription of transcription unit tyrP. Reaction inhibition by HU.
Type: transcription
Pathway Components: tyrP - HU -> tyrP_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor HU protein nd nd
reactant tyrP gene nd nd
product tyrP_mRNA RNA nd nd
tyrP_mRNA TyrP
Name: tyrP_mRNA -> TyrP
Description: Translation of TyrP
Type: translation
Pathway Components: tyrP_mRNA -> TyrP
Components:
Function Name Type Evidence Reference(s)
product TyrP protein nd nd
reactant tyrP_mRNA RNA nd nd
TyrP tyrosine_Ext tyrosine
Name: tyrosine_Ext -> tyrosine
Description: Transport of tyrosine_Ext through a bacterial membrane, leading to the presence of tyrosine inside the cell.
Type: transport
Pathway Components: tyrosine_Ext - TyrP -> tyrosine
Components:
Function Name Type Evidence Reference(s)
catalyzer TyrP protein nd nd
product tyrosine simple_molecule nd nd
reactant tyrosine_Ext simple_molecule nd nd
seqA-pgm_mRNA SeqA
Name: seqA-pgm_mRNA -> SeqA
Description: Translation of SeqA
Type: translation
Pathway Components: seqA-pgm_mRNA -> SeqA
Components:
Function Name Type Evidence Reference(s)
product SeqA protein nd nd
reactant seqA-pgm_mRNA RNA nd nd
seqA-pgm_mRNA Pgm
Name: seqA-pgm_mRNA -> Pgm
Description: Translation of Pgm
Type: translation
Pathway Components: seqA-pgm_mRNA -> Pgm
Components:
Function Name Type Evidence Reference(s)
product Pgm protein nd nd
reactant seqA-pgm_mRNA RNA nd nd
α-glucose 1,6-bisphosphate D-glucose 1-phosphate Pgm D-glucose 1-phosphate glucose-6-P
Name: D-glucose 1-phosphate -> glucose-6-P
Description: Reaction transforming D-glucose 1-phosphate into glucose-6-P
Type: state transition
Pathway Components: D-glucose 1-phosphate - Pgm - D-glucose 1-phosphate - α-glucose 1,6-bisphosphate -> glucose-6-P
Components:
Function Name Type Evidence Reference(s)
inhibitor α-glucose 1,6-bisphosphate simple_molecule nd nd
inhibitor D-glucose 1-phosphate simple_molecule nd nd
reactant D-glucose 1-phosphate simple_molecule nd nd
catalyzer Pgm protein nd nd
product glucose-6-P simple_molecule nd nd
Pgm Reactants Products
Name: phosphorylated phosphoglucomutase + D-glucose 1-phosphate -> α-glucose 1,6-bisphosphate + phosphoglucomutase
Description: Reaction transforming phosphorylated phosphoglucomutase, D-glucose 1-phosphate into α-glucose 1,6-bisphosphate, phosphoglucomutase
Type: state transition
Pathway Components: phosphorylated phosphoglucomutase + D-glucose 1-phosphate - Pgm -> α-glucose 1,6-bisphosphate + phosphoglucomutase
Components:
Function Name Type Evidence Reference(s)
product α-glucose 1,6-bisphosphate simple_molecule nd nd
reactant D-glucose 1-phosphate simple_molecule nd nd
catalyzer Pgm protein nd nd
product phosphoglucomutase simple_molecule nd nd
reactant phosphorylated phosphoglucomutase simple_molecule nd nd
Pgm Reactants phosphorylated phosphoglucomutase + glucose-6-P
Name: α-glucose 1,6-bisphosphate + phosphoglucomutase -> phosphorylated phosphoglucomutase + glucose-6-P
Description: Reaction transforming α-glucose 1,6-bisphosphate, phosphoglucomutase into phosphorylated phosphoglucomutase, glucose-6-P
Type: state transition
Pathway Components: α-glucose 1,6-bisphosphate + phosphoglucomutase - Pgm -> phosphorylated phosphoglucomutase + glucose-6-P
Components:
Function Name Type Evidence Reference(s)
reactant α-glucose 1,6-bisphosphate simple_molecule nd nd
catalyzer Pgm protein nd nd
product glucose-6-P simple_molecule nd nd
reactant phosphoglucomutase simple_molecule nd nd
product phosphorylated phosphoglucomutase simple_molecule nd nd
galETKM_mRNA GalE
Name: galETKM_mRNA -> GalE
Description: Translation of GalE
Type: translation
Pathway Components: galETKM_mRNA -> GalE
Components:
Function Name Type Evidence Reference(s)
product GalE protein nd nd
reactant galETKM_mRNA RNA nd nd
GalE UDPG UDP-galactose
Name: UDPG -> UDP-galactose
Description: Reaction transforming UDPG into UDP-galactose
Type: state transition
Pathway Components: UDPG - GalE -> UDP-galactose
Components:
Function Name Type Evidence Reference(s)
catalyzer GalE protein nd nd
product UDP-galactose simple_molecule nd nd
reactant UDPG simple_molecule nd nd
galETKM_mRNA GalT
Name: galETKM_mRNA -> GalT
Description: Translation of GalT
Type: translation
Pathway Components: galETKM_mRNA -> GalT
Components:
Function Name Type Evidence Reference(s)
product GalT protein nd nd
reactant galETKM_mRNA RNA nd nd
GalT galactose-1-P + UDPG D-glucose 1-phosphate + UDP-galactose
Name: galactose-1-P + UDPG -> D-glucose 1-phosphate + UDP-galactose
Description: Reaction transforming galactose-1-P, UDPG into D-glucose 1-phosphate, UDP-galactose
Type: state transition
Pathway Components: galactose-1-P + UDPG - GalT -> D-glucose 1-phosphate + UDP-galactose
Components:
Function Name Type Evidence Reference(s)
product D-glucose 1-phosphate simple_molecule nd nd
catalyzer GalT protein nd nd
product UDP-galactose simple_molecule nd nd
reactant UDPG simple_molecule nd nd
reactant galactose-1-P simple_molecule nd nd
galETKM_mRNA GalK
Name: galETKM_mRNA -> GalK
Description: Translation of GalK
Type: translation
Pathway Components: galETKM_mRNA -> GalK
Components:
Function Name Type Evidence Reference(s)
product GalK protein nd nd
reactant galETKM_mRNA RNA nd nd
GalK α-D-galactose galactose-1-P
Name: α-D-galactose -> galactose-1-P
Description: Reaction transforming α-D-galactose into galactose-1-P
Type: state transition
Pathway Components: α-D-galactose - GalK -> galactose-1-P
Components:
Function Name Type Evidence Reference(s)
reactant α-D-galactose simple_molecule nd nd
catalyzer GalK protein nd nd
product galactose-1-P simple_molecule nd nd
galETKM_mRNA GalM
Name: galETKM_mRNA -> GalM
Description: Translation of GalM
Type: translation
Pathway Components: galETKM_mRNA -> GalM
Components:
Function Name Type Evidence Reference(s)
product GalM protein nd nd
reactant galETKM_mRNA RNA nd nd
GalM beta-D-galactose α-D-galactose
Name: beta-D-galactose -> α-D-galactose
Description: Reaction transforming beta-D-galactose into α-D-galactose
Type: state transition
Pathway Components: beta-D-galactose - GalM -> α-D-galactose
Components:
Function Name Type Evidence Reference(s)
product α-D-galactose simple_molecule nd nd
catalyzer GalM protein nd nd
reactant beta-D-galactose simple_molecule nd nd
galET_mRNA GalE
Name: galET_mRNA -> GalE
Description: Translation of GalE
Type: translation
Pathway Components: galET_mRNA -> GalE
Components:
Function Name Type Evidence Reference(s)
product GalE protein nd nd
reactant galET_mRNA RNA nd nd
galET_mRNA GalT
Name: galET_mRNA -> GalT
Description: Translation of GalT
Type: translation
Pathway Components: galET_mRNA -> GalT
Components:
Function Name Type Evidence Reference(s)
product GalT protein nd nd
reactant galET_mRNA RNA nd nd
galETK_mRNA GalE
Name: galETK_mRNA -> GalE
Description: Translation of GalE
Type: translation
Pathway Components: galETK_mRNA -> GalE
Components:
Function Name Type Evidence Reference(s)
product GalE protein nd nd
reactant galETK_mRNA RNA nd nd
galETK_mRNA GalT
Name: galETK_mRNA -> GalT
Description: Translation of GalT
Type: translation
Pathway Components: galETK_mRNA -> GalT
Components:
Function Name Type Evidence Reference(s)
product GalT protein nd nd
reactant galETK_mRNA RNA nd nd
galETK_mRNA GalK
Name: galETK_mRNA -> GalK
Description: Translation of GalK
Type: translation
Pathway Components: galETK_mRNA -> GalK
Components:
Function Name Type Evidence Reference(s)
product GalK protein nd nd
reactant galETK_mRNA RNA nd nd
galE_mRNA GalE
Name: galE_mRNA -> GalE
Description: Translation of GalE
Type: translation
Pathway Components: galE_mRNA -> GalE
Components:
Function Name Type Evidence Reference(s)
product GalE protein nd nd
reactant galE_mRNA RNA nd nd
mtr_mRNA Mtr
Name: mtr_mRNA -> Mtr
Description: Translation of Mtr
Type: translation
Pathway Components: mtr_mRNA -> Mtr
Components:
Function Name Type Evidence Reference(s)
product Mtr protein nd nd
reactant mtr_mRNA RNA nd nd
Mtr indole_Ext indole
Name: indole_Ext -> indole
Description: Transport of indole_Ext through a bacterial membrane, leading to the presence of indole inside the cell.
Type: transport
Pathway Components: indole_Ext - Mtr -> indole
Components:
Function Name Type Evidence Reference(s)
catalyzer Mtr protein nd nd
product indole simple_molecule nd nd
reactant indole_Ext simple_molecule nd nd
Mtr tryptophan_Ext tryptophan
Name: tryptophan_Ext -> tryptophan
Description: Transport of tryptophan_Ext through a bacterial membrane, leading to the presence of tryptophan inside the cell.
Type: transport
Pathway Components: tryptophan_Ext - Mtr -> tryptophan
Components:
Function Name Type Evidence Reference(s)
catalyzer Mtr protein nd nd
product tryptophan simple_molecule nd nd
reactant tryptophan_Ext simple_molecule nd nd
micF_mRNA RNA:MicF
Name: micF_mRNA -> RNA:MicF
Description: Translation of RNA:MicF
Type: translation
Pathway Components: micF_mRNA -> RNA:MicF
Components:
Function Name Type Evidence Reference(s)
product RNA:MicF protein nd nd
reactant micF_mRNA RNA nd nd



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