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GatR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
D-glyceraldehyde 3-phosphate D-tagatofuranose 1,6-diphosphate D-tagatofuranose 6-phosphate GatA GatB GatC GatD GatR GatY GatZ HPr HPr - phosphorylated_Ext DHAP galactitol 1-phosphate dulcite_Ext gatYZABCD gatYZABCD_mRNA GatY GatZ GatC GatB GatA


Gensor Unit       
Name: GatR
Classification:
Groups: GUs related to carbon source utilization
Gene Ontology Terms (GO): GO:0009025 - tagatose-bisphosphate aldolase activity
GO:0008270 - zinc ion binding
GO:0016491 - oxidoreductase activity
GO:0016020 - membrane
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system
GO:0003824 - catalytic activity
GO:0005887 - integral component of plasma membrane
GO:0016310 - phosphorylation
GO:0016829 - lyase activity
GO:0005737 - cytoplasm
GO:0015577 - galactitol transmembrane transporter activity
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Components:
Function Name Type
RNA gatYZABCD_mRNA RNA


Reactions       
Showing 13 reactions
gatYZABCD gatYZABCD_mRNA
Name: gatYZABCD -> gatYZABCD_mRNA
Description: Transcription of transcription unit gatYZABCD; reaction inhibition by GatR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product gatYZABCD_mRNA RNA nd nd
reactant gatYZABCD gene nd nd
gatYZABCD_mRNA GatZ
Name: gatYZABCD_mRNA -> GatZ
Description: Translation of GatZ
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GatZ protein nd nd
reactant gatYZABCD_mRNA RNA nd nd
GatY + GatZ GatY-GatZ
Name: GatY + GatZ -> GatY-GatZ
Description: Reaction transforming GatY, GatZ into GatY-GatZ
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant GatY protein nd nd
reactant GatZ protein nd nd
product GatY-GatZ complex nd nd
D-tagatofuranose 1,6-diphosphate DHAP + D-glyceraldehyde 3-phosphate
Name: D-tagatofuranose 1,6-diphosphate -> DHAP + D-glyceraldehyde 3-phosphate
Description: Reaction transforming D-tagatofuranose 1,6-diphosphate into DHAP, D-glyceraldehyde 3-phosphate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product DHAP simple molecule nd nd
reactant D-tagatofuranose 1,6-diphosphate simple molecule nd nd
product D-glyceraldehyde 3-phosphate simple molecule nd nd
gatYZABCD_mRNA GatD
Name: gatYZABCD_mRNA -> GatD
Description: Translation of GatD
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gatYZABCD_mRNA RNA nd nd
product GatD protein nd nd
galactitol 1-phosphate D-tagatofuranose 6-phosphate
Name: galactitol 1-phosphate -> D-tagatofuranose 6-phosphate
Description: Reaction transforming galactitol 1-phosphate into D-tagatofuranose 6-phosphate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant galactitol 1-phosphate simple molecule nd nd
product D-tagatofuranose 6-phosphate simple molecule nd nd
gatYZABCD_mRNA GatC
Name: gatYZABCD_mRNA -> GatC
Description: Translation of GatC
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gatYZABCD_mRNA RNA nd nd
product GatC protein nd nd
GatC + GatB + GatA GatC-GatB-GatA
Name: GatC + GatB + GatA -> GatC-GatB-GatA
Description: Reaction transforming GatC, GatB, GatA into GatC-GatB-GatA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product GatC-GatB-GatA complex nd nd
reactant GatA protein nd nd
reactant GatB protein nd nd
reactant GatC protein nd nd
HPr - phosphorylated_Ext + dulcite_Ext galactitol 1-phosphate + HPr
Name: HPr - phosphorylated_Ext + dulcite_Ext -> galactitol 1-phosphate + HPr
Description: Transport of HPr - phosphorylated_Ext, dulcite_Ext through a bacterial membrane, leading to the presence of galactitol 1-phosphate, HPr inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product HPr simple molecule nd nd
reactant dulcite_Ext simple molecule nd nd
reactant HPr - phosphorylated_Ext simple molecule nd nd
product galactitol 1-phosphate simple molecule nd nd
gatYZABCD_mRNA GatA
Name: gatYZABCD_mRNA -> GatA
Description: Translation of GatA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gatYZABCD_mRNA RNA nd nd
product GatA protein nd nd
gatYZABCD_mRNA GatY
Name: gatYZABCD_mRNA -> GatY
Description: Translation of GatY
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GatY protein nd nd
reactant gatYZABCD_mRNA RNA nd nd
gatYZABCD_mRNA GatB
Name: gatYZABCD_mRNA -> GatB
Description: Translation of GatB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GatB protein nd nd
reactant gatYZABCD_mRNA RNA nd nd
D-tagatofuranose 6-phosphate D-tagatofuranose 1,6-diphosphate
Name: D-tagatofuranose 6-phosphate -> D-tagatofuranose 1,6-diphosphate
Description: Transformation of D-tagatofuranose 6-phosphate into D-tagatofuranose 1,6-diphosphate by one, or two/three reactions not shown.
Type: super-reaction
Components:
Function Name Type Evidence Reference(s)
product D-tagatofuranose 1,6-diphosphate simple molecule nd nd
reactant D-tagatofuranose 6-phosphate simple molecule nd nd



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