RegulonDB RegulonDB

GadX Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
GABA GABA_Ext AmtB AsnB BtuB BtuC BtuD BtuF CO2 CadA CadB D-glu DctR ExbB ExbD GadA GadB GadC GadE GadW GadX This Gensor Unit is not yet available GlnK HdeA HdeB HdeD Hns L-asparagine asp L-glutamate L-glutamate_Ext L-glutamine L-lysine L-lysine_Ext Lon MdtE MdtF MurI This Gensor Unit is not yet available RpoS Slp TolC TonB UspE YbaS YbaT YhiD a drug a drug_Ext peptides Try ammonia ammonia_Ext ammonium ammonium_Ext asnB asnB_mRNA btuB-murI btuB-murI_mRNA cadBA cadBA_mRNA BioDex 1- BioDex 1-_Ext B12 B12_Ext Cbi Cbi_Ext PP gadAX gadAX_mRNA gadBC gadBC_mRNA gadE gadE-mdtEF gadE-mdtEF_mRNA gadE_mRNA This Gensor Unit is not yet available This Gensor Unit is not yet available This Gensor Unit is not yet available This Gensor Unit is not yet available This Gensor Unit is not yet available This Gensor Unit is not yet available gadY gadY_mRNA glnK-amtB glnK-amtB_mRNA hdeAB-yhiD hdeAB-yhiD_mRNA hdeD hdeD_mRNA hns hns_mRNA lon lon_mRNA rpoS rpoS_mRNA slp-dctR slp-dctR_mRNA uspE uspE_mRNA ybaST ybaST_mRNA TonB ExbB ExbD BtuB BtuF BtuC BtuD BtuB ExbD ExbB TonB TolC MdtE MdtF CO2


Gensor Unit       
Name: GadX
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:1902475 - L-alpha-amino acid transmembrane transport
GO:0015807 - L-amino acid transport
GO:0070981 - L-asparagine biosynthetic process
GO:1903401 - L-lysine transmembrane transport
GO:0003333 - amino acid transmembrane transport
GO:0072488 - ammonium transmembrane transport
Read more >
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
GO:0031226 - intrinsic component of plasma membrane
GO:0016020 - membrane
GO:0009295 - nucleoid
Read more >
molecular_function GO:0005524 - ATP binding
GO:0004176 - ATP-dependent peptidase activity
GO:0016887 - ATPase activity
GO:0003677 - DNA binding
GO:0003700 - DNA binding transcription factor activity
GO:0015179 - L-amino acid transmembrane transporter activity
GO:0003723 - RNA binding
Read more >
Components: Show/Hide Components Table (104 more...)
Function Name Type
protein AmtB protein
protein AsnB protein
simple_molecule B12s simple_molecule
simple_molecule B12s_Ext simple_molecule
simple_molecule BioDex 1- simple_molecule
simple_molecule BioDex 1-_Ext simple_molecule
protein BtuB protein
complex BtuB-ExbD-ExbB-TonB complex
simple_molecule CO2 simple_molecule
protein CadA protein
protein CadB protein
protein DctR protein
protein ExbB protein
protein ExbD protein
simple_molecule GABA simple_molecule
simple_molecule GABA_Ext simple_molecule
protein GadA protein
protein GadB protein
protein GadC protein
protein GadE protein
protein GadW protein
protein GadX protein
protein GlnK protein
protein HdeA protein
protein HdeB protein
protein HdeD protein
protein Hns protein
simple_molecule L-glutamate simple_molecule
simple_molecule L-glutamate_Ext simple_molecule
protein Lon protein
protein MdtE protein
protein MdtF protein
protein MurI protein
protein RNA:IS183 protein
protein RcsB protein
complex RcsB-GadE complex
protein RpoA protein
protein RpoB protein
complex RpoB-RpoC-RpoA-RpoS complex
protein RpoC protein
protein RpoS protein
protein Slp protein
protein TolC protein
complex TolC-MdtE-MdtF complex
protein TonB protein
protein UspE protein
protein YbaS protein
protein YbaT protein
protein YhiD protein
simple_molecule ammonium simple_molecule
simple_molecule ammonium_Ext simple_molecule
gene asnB gene
RNA asnB_mRNA RNA
simple_molecule asparagine simple_molecule
simple_molecule aspartate simple_molecule
gene btuB-murI gene
RNA btuB-murI_mRNA RNA
gene cadBA gene
RNA cadBA_mRNA RNA
simple_molecule cobinamide simple_molecule
simple_molecule cobinamide_Ext simple_molecule
simple_molecule diphosphate simple_molecule
simple_molecule drug simple_molecule
simple_molecule drug_Ext simple_molecule
gene gadAX gene
RNA gadAX_mRNA RNA
gene gadBC gene
RNA gadBC_mRNA RNA
gene gadE gene
gene gadE-mdtEF gene
RNA gadE-mdtEF_mRNA RNA
RNA gadE_mRNA RNA
gene gadW gene
RNA gadW_mRNA RNA
gene gadX gene
gene gadXW gene
RNA gadXW_mRNA RNA
RNA gadX_mRNA RNA
gene gadY gene
RNA gadY_mRNA RNA
gene glnK-amtB gene
RNA glnK-amtB_mRNA RNA
simple_molecule glu simple_molecule
simple_molecule glutamine simple_molecule
gene hdeAB-yhiD gene
RNA hdeAB-yhiD_mRNA RNA
gene hdeD gene
RNA hdeD_mRNA RNA
gene hns gene
RNA hns_mRNA RNA
gene lon gene
RNA lon_mRNA RNA
simple_molecule lysine simple_molecule
simple_molecule lysine_Ext simple_molecule
simple_molecule peptide simple_molecule
simple_molecule protein simple_molecule
gene rpoS gene
RNA rpoS_mRNA RNA
gene slp-dctR gene
RNA slp-dctR_mRNA RNA
gene uspE gene
RNA uspE_mRNA RNA
gene ybaST gene
RNA ybaST_mRNA RNA


Reactions       
Showing 70 reactions
GadX asnB asnB_mRNA
Name: asnB -> asnB_mRNA
Description: Transcription of transcription unit asnB. Reaction activation by GadX.
Type: transcription
Pathway Components: asnB - GadX -> asnB_mRNA
Components:
Function Name Type Evidence Reference(s)
activator GadX protein nd nd
reactant asnB gene nd nd
product asnB_mRNA RNA nd nd
GadX btuB-murI btuB-murI_mRNA
Name: btuB-murI -> btuB-murI_mRNA
Description: Transcription of transcription unit btuB-murI. Reaction inhibition by GadX.
Type: transcription
Pathway Components: btuB-murI - GadX -> btuB-murI_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor GadX protein nd nd
reactant btuB-murI gene nd nd
product btuB-murI_mRNA RNA nd nd
GadX cadBA cadBA_mRNA
Name: cadBA -> cadBA_mRNA
Description: Transcription of transcription unit cadBA. Reaction activation by GadX.
Type: transcription
Pathway Components: cadBA - GadX -> cadBA_mRNA
Components:
Function Name Type Evidence Reference(s)
activator GadX protein nd nd
reactant cadBA gene nd nd
product cadBA_mRNA RNA nd nd
GadX gadAX gadAX_mRNA
Name: gadAX -> gadAX_mRNA
Description: Transcription of transcription unit gadAX. Reaction activation by GadX.
Type: transcription
Pathway Components: gadAX - GadX -> gadAX_mRNA
Components:
Function Name Type Evidence Reference(s)
activator GadX protein nd nd
reactant gadAX gene nd nd
product gadAX_mRNA RNA nd nd
GadX gadBC gadBC_mRNA
Name: gadBC -> gadBC_mRNA
Description: Transcription of transcription unit gadBC. Reaction activation by GadX.
Type: transcription
Pathway Components: gadBC - GadX -> gadBC_mRNA
Components:
Function Name Type Evidence Reference(s)
activator GadX protein nd nd
reactant gadBC gene nd nd
product gadBC_mRNA RNA nd nd
GadX gadE gadE_mRNA
Name: gadE -> gadE_mRNA
Description: Transcription of transcription unit gadE. Reaction activation by GadX.
Type: transcription
Pathway Components: gadE - GadX -> gadE_mRNA
Components:
Function Name Type Evidence Reference(s)
activator GadX protein nd nd
reactant gadE gene nd nd
product gadE_mRNA RNA nd nd
GadX gadE-mdtEF gadE-mdtEF_mRNA
Name: gadE-mdtEF -> gadE-mdtEF_mRNA
Description: Transcription of transcription unit gadE-mdtEF. Reaction activation by GadX.
Type: transcription
Pathway Components: gadE-mdtEF - GadX -> gadE-mdtEF_mRNA
Components:
Function Name Type Evidence Reference(s)
activator GadX protein nd nd
reactant gadE-mdtEF gene nd nd
product gadE-mdtEF_mRNA RNA nd nd
GadX gadW gadW_mRNA
Name: gadW -> gadW_mRNA
Description: Transcription of transcription unit gadW. Reaction inhibition by GadX.
Type: transcription
Pathway Components: gadW - GadX -> gadW_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor GadX protein nd nd
reactant gadW gene nd nd
product gadW_mRNA RNA nd nd
GadX gadX gadX_mRNA
Name: gadX -> gadX_mRNA
Description: Transcription of transcription unit gadX. Reaction activation by GadX.
Type: transcription
Pathway Components: gadX - GadX -> gadX_mRNA
Components:
Function Name Type Evidence Reference(s)
activator GadX protein nd nd
reactant gadX gene nd nd
product gadX_mRNA RNA nd nd
GadX gadXW gadXW_mRNA
Name: gadXW -> gadXW_mRNA
Description: Transcription of transcription unit gadXW. Reaction activation by GadX.
Type: transcription
Pathway Components: gadXW - GadX -> gadXW_mRNA
Components:
Function Name Type Evidence Reference(s)
activator GadX protein nd nd
reactant gadXW gene nd nd
product gadXW_mRNA RNA nd nd
GadX gadY gadY_mRNA
Name: gadY -> gadY_mRNA
Description: Transcription of transcription unit gadY. Reaction activation by GadX.
Type: transcription
Pathway Components: gadY - GadX -> gadY_mRNA
Components:
Function Name Type Evidence Reference(s)
activator GadX protein nd nd
reactant gadY gene nd nd
product gadY_mRNA RNA nd nd
GadX glnK-amtB glnK-amtB_mRNA
Name: glnK-amtB -> glnK-amtB_mRNA
Description: Transcription of transcription unit glnK-amtB. Reaction activation by GadX.
Type: transcription
Pathway Components: glnK-amtB - GadX -> glnK-amtB_mRNA
Components:
Function Name Type Evidence Reference(s)
activator GadX protein nd nd
reactant glnK-amtB gene nd nd
product glnK-amtB_mRNA RNA nd nd
GadX GadX hdeAB-yhiD hdeAB-yhiD_mRNA
Name: hdeAB-yhiD -> hdeAB-yhiD_mRNA
Description: Transcription of transcription unit hdeAB-yhiD. Reaction activation by GadX. Reaction inhibition by GadX.
Type: transcription
Pathway Components: hdeAB-yhiD - GadX - GadX -> hdeAB-yhiD_mRNA
Components:
Function Name Type Evidence Reference(s)
activator GadX protein nd nd
inhibitor GadX protein nd nd
reactant hdeAB-yhiD gene nd nd
product hdeAB-yhiD_mRNA RNA nd nd
GadX hdeD hdeD_mRNA
Name: hdeD -> hdeD_mRNA
Description: Transcription of transcription unit hdeD. Reaction activation by GadX.
Type: transcription
Pathway Components: hdeD - GadX -> hdeD_mRNA
Components:
Function Name Type Evidence Reference(s)
activator GadX protein nd nd
reactant hdeD gene nd nd
product hdeD_mRNA RNA nd nd
GadX hns hns_mRNA
Name: hns -> hns_mRNA
Description: Transcription of transcription unit hns. Reaction activation by GadX.
Type: transcription
Pathway Components: hns - GadX -> hns_mRNA
Components:
Function Name Type Evidence Reference(s)
activator GadX protein nd nd
reactant hns gene nd nd
product hns_mRNA RNA nd nd
GadX lon lon_mRNA
Name: lon -> lon_mRNA
Description: Transcription of transcription unit lon. Reaction activation by GadX.
Type: transcription
Pathway Components: lon - GadX -> lon_mRNA
Components:
Function Name Type Evidence Reference(s)
activator GadX protein nd nd
reactant lon gene nd nd
product lon_mRNA RNA nd nd
GadX rpoS rpoS_mRNA
Name: rpoS -> rpoS_mRNA
Description: Transcription of transcription unit rpoS. Reaction activation by GadX.
Type: transcription
Pathway Components: rpoS - GadX -> rpoS_mRNA
Components:
Function Name Type Evidence Reference(s)
activator GadX protein nd nd
reactant rpoS gene nd nd
product rpoS_mRNA RNA nd nd
GadX slp-dctR slp-dctR_mRNA
Name: slp-dctR -> slp-dctR_mRNA
Description: Transcription of transcription unit slp-dctR. Reaction activation by GadX.
Type: transcription
Pathway Components: slp-dctR - GadX -> slp-dctR_mRNA
Components:
Function Name Type Evidence Reference(s)
activator GadX protein nd nd
reactant slp-dctR gene nd nd
product slp-dctR_mRNA RNA nd nd
GadX uspE uspE_mRNA
Name: uspE -> uspE_mRNA
Description: Transcription of transcription unit uspE. Reaction activation by GadX.
Type: transcription
Pathway Components: uspE - GadX -> uspE_mRNA
Components:
Function Name Type Evidence Reference(s)
activator GadX protein nd nd
reactant uspE gene nd nd
product uspE_mRNA RNA nd nd
GadX ybaST ybaST_mRNA
Name: ybaST -> ybaST_mRNA
Description: Transcription of transcription unit ybaST. Reaction activation by GadX.
Type: transcription
Pathway Components: ybaST - GadX -> ybaST_mRNA
Components:
Function Name Type Evidence Reference(s)
activator GadX protein nd nd
reactant ybaST gene nd nd
product ybaST_mRNA RNA nd nd
hdeAB-yhiD_mRNA HdeA
Name: hdeAB-yhiD_mRNA -> HdeA
Description: Translation of HdeA
Type: translation
Pathway Components: hdeAB-yhiD_mRNA -> HdeA
Components:
Function Name Type Evidence Reference(s)
product HdeA protein nd nd
reactant hdeAB-yhiD_mRNA RNA nd nd
hdeAB-yhiD_mRNA HdeB
Name: hdeAB-yhiD_mRNA -> HdeB
Description: Translation of HdeB
Type: translation
Pathway Components: hdeAB-yhiD_mRNA -> HdeB
Components:
Function Name Type Evidence Reference(s)
product HdeB protein nd nd
reactant hdeAB-yhiD_mRNA RNA nd nd
hdeAB-yhiD_mRNA YhiD
Name: hdeAB-yhiD_mRNA -> YhiD
Description: Translation of YhiD
Type: translation
Pathway Components: hdeAB-yhiD_mRNA -> YhiD
Components:
Function Name Type Evidence Reference(s)
product YhiD protein nd nd
reactant hdeAB-yhiD_mRNA RNA nd nd
gadE_mRNA GadE
Name: gadE_mRNA -> GadE
Description: Translation of GadE
Type: translation
Pathway Components: gadE_mRNA -> GadE
Components:
Function Name Type Evidence Reference(s)
product GadE protein nd nd
reactant gadE_mRNA RNA nd nd
RcsB + GadE RcsB-GadE
Name: RcsB + GadE -> RcsB-GadE
Description: Reaction transforming RcsB, GadE into RcsB-GadE
Type: state transition
Pathway Components: RcsB + GadE -> RcsB-GadE
Components:
Function Name Type Evidence Reference(s)
reactant GadE protein nd nd
reactant RcsB protein nd nd
product RcsB-GadE complex nd nd
rpoS_mRNA RpoS
Name: rpoS_mRNA -> RpoS
Description: Translation of RpoS
Type: translation
Pathway Components: rpoS_mRNA -> RpoS
Components:
Function Name Type Evidence Reference(s)
product RpoS protein nd nd
reactant rpoS_mRNA RNA nd nd
RpoA + RpoC + RpoS + RpoB RpoB-RpoC-RpoA-RpoS
Name: RpoA + RpoC + RpoS + RpoB -> RpoB-RpoC-RpoA-RpoS
Description: Reaction transforming RpoA, RpoC, RpoS, RpoB into RpoB-RpoC-RpoA-RpoS
Type: state transition
Pathway Components: RpoA + RpoC + RpoS + RpoB -> RpoB-RpoC-RpoA-RpoS
Components:
Function Name Type Evidence Reference(s)
reactant RpoA protein nd nd
reactant RpoB protein nd nd
product RpoB-RpoC-RpoA-RpoS complex nd nd
reactant RpoC protein nd nd
reactant RpoS protein nd nd
hdeD_mRNA HdeD
Name: hdeD_mRNA -> HdeD
Description: Translation of HdeD
Type: translation
Pathway Components: hdeD_mRNA -> HdeD
Components:
Function Name Type Evidence Reference(s)
product HdeD protein nd nd
reactant hdeD_mRNA RNA nd nd
hns_mRNA Hns
Name: hns_mRNA -> Hns
Description: Translation of Hns
Type: translation
Pathway Components: hns_mRNA -> Hns
Components:
Function Name Type Evidence Reference(s)
product Hns protein nd nd
reactant hns_mRNA RNA nd nd
gadE-mdtEF_mRNA GadE
Name: gadE-mdtEF_mRNA -> GadE
Description: Translation of GadE
Type: translation
Pathway Components: gadE-mdtEF_mRNA -> GadE
Components:
Function Name Type Evidence Reference(s)
product GadE protein nd nd
reactant gadE-mdtEF_mRNA RNA nd nd
gadE-mdtEF_mRNA MdtE
Name: gadE-mdtEF_mRNA -> MdtE
Description: Translation of MdtE
Type: translation
Pathway Components: gadE-mdtEF_mRNA -> MdtE
Components:
Function Name Type Evidence Reference(s)
product MdtE protein nd nd
reactant gadE-mdtEF_mRNA RNA nd nd
MdtF + MdtE + TolC TolC-MdtE-MdtF
Name: MdtF + MdtE + TolC -> TolC-MdtE-MdtF
Description: Reaction transforming MdtF, MdtE, TolC into TolC-MdtE-MdtF
Type: state transition
Pathway Components: MdtF + MdtE + TolC -> TolC-MdtE-MdtF
Components:
Function Name Type Evidence Reference(s)
reactant MdtE protein nd nd
reactant MdtF protein nd nd
reactant TolC protein nd nd
product TolC-MdtE-MdtF complex nd nd
TolC-MdtE-MdtF drug_Ext drug
Name: drug_Ext -> drug
Description: Transport of drug_Ext through a bacterial membrane, leading to the presence of drug inside the cell.
Type: transport
Pathway Components: drug_Ext - TolC-MdtE-MdtF -> drug
Components:
Function Name Type Evidence Reference(s)
catalyzer TolC-MdtE-MdtF complex nd nd
product drug simple_molecule nd nd
reactant drug_Ext simple_molecule nd nd
gadE-mdtEF_mRNA MdtF
Name: gadE-mdtEF_mRNA -> MdtF
Description: Translation of MdtF
Type: translation
Pathway Components: gadE-mdtEF_mRNA -> MdtF
Components:
Function Name Type Evidence Reference(s)
product MdtF protein nd nd
reactant gadE-mdtEF_mRNA RNA nd nd
gadW_mRNA GadW
Name: gadW_mRNA -> GadW
Description: Translation of GadW
Type: translation
Pathway Components: gadW_mRNA -> GadW
Components:
Function Name Type Evidence Reference(s)
product GadW protein nd nd
reactant gadW_mRNA RNA nd nd
gadXW_mRNA GadX
Name: gadXW_mRNA -> GadX
Description: Translation of GadX
Type: translation
Pathway Components: gadXW_mRNA -> GadX
Components:
Function Name Type Evidence Reference(s)
product GadX protein nd nd
reactant gadXW_mRNA RNA nd nd
gadXW_mRNA GadW
Name: gadXW_mRNA -> GadW
Description: Translation of GadW
Type: translation
Pathway Components: gadXW_mRNA -> GadW
Components:
Function Name Type Evidence Reference(s)
product GadW protein nd nd
reactant gadXW_mRNA RNA nd nd
btuB-murI_mRNA BtuB
Name: btuB-murI_mRNA -> BtuB
Description: Translation of BtuB
Type: translation
Pathway Components: btuB-murI_mRNA -> BtuB
Components:
Function Name Type Evidence Reference(s)
product BtuB protein nd nd
reactant btuB-murI_mRNA RNA nd nd
ExbD + TonB + BtuB + ExbB BtuB-ExbD-ExbB-TonB
Name: ExbD + TonB + BtuB + ExbB -> BtuB-ExbD-ExbB-TonB
Description: Reaction transforming ExbD, TonB, BtuB, ExbB into BtuB-ExbD-ExbB-TonB
Type: state transition
Pathway Components: ExbD + TonB + BtuB + ExbB -> BtuB-ExbD-ExbB-TonB
Components:
Function Name Type Evidence Reference(s)
reactant BtuB protein nd nd
product BtuB-ExbD-ExbB-TonB complex nd nd
reactant ExbB protein nd nd
reactant ExbD protein nd nd
reactant TonB protein nd nd
BtuB-ExbD-ExbB-TonB cobinamide_Ext cobinamide
Name: cobinamide_Ext -> cobinamide
Description: Transport of cobinamide_Ext through a bacterial membrane, leading to the presence of cobinamide inside the cell.
Type: transport
Pathway Components: cobinamide_Ext - BtuB-ExbD-ExbB-TonB -> cobinamide
Components:
Function Name Type Evidence Reference(s)
catalyzer BtuB-ExbD-ExbB-TonB complex nd nd
product cobinamide simple_molecule nd nd
reactant cobinamide_Ext simple_molecule nd nd
BtuB-ExbD-ExbB-TonB B12s_Ext B12s
Name: B12s_Ext -> B12s
Description: Transport of B12s_Ext through a bacterial membrane, leading to the presence of B12s inside the cell.
Type: transport
Pathway Components: B12s_Ext - BtuB-ExbD-ExbB-TonB -> B12s
Components:
Function Name Type Evidence Reference(s)
product B12s simple_molecule nd nd
reactant B12s_Ext simple_molecule nd nd
catalyzer BtuB-ExbD-ExbB-TonB complex nd nd
btuB-murI_mRNA MurI
Name: btuB-murI_mRNA -> MurI
Description: Translation of MurI
Type: translation
Pathway Components: btuB-murI_mRNA -> MurI
Components:
Function Name Type Evidence Reference(s)
product MurI protein nd nd
reactant btuB-murI_mRNA RNA nd nd
MurI L-glutamate glu
Name: L-glutamate -> glu
Description: Reaction transforming L-glutamate into glu
Type: state transition
Pathway Components: L-glutamate - MurI -> glu
Components:
Function Name Type Evidence Reference(s)
reactant L-glutamate simple_molecule nd nd
catalyzer MurI protein nd nd
product glu simple_molecule nd nd
glnK-amtB_mRNA GlnK
Name: glnK-amtB_mRNA -> GlnK
Description: Translation of GlnK
Type: translation
Pathway Components: glnK-amtB_mRNA -> GlnK
Components:
Function Name Type Evidence Reference(s)
product GlnK simple_molecule nd nd
reactant glnK-amtB_mRNA RNA nd nd
glnK-amtB_mRNA AmtB
Name: glnK-amtB_mRNA -> AmtB
Description: Translation of AmtB
Type: translation
Pathway Components: glnK-amtB_mRNA -> AmtB
Components:
Function Name Type Evidence Reference(s)
product AmtB protein nd nd
reactant glnK-amtB_mRNA RNA nd nd
AmtB ammonium_Ext ammonium
Name: ammonium_Ext -> ammonium
Description: Transport of ammonium_Ext through a bacterial membrane, leading to the presence of ammonium inside the cell.
Type: transport
Pathway Components: ammonium_Ext - AmtB -> ammonium
Components:
Function Name Type Evidence Reference(s)
catalyzer AmtB protein nd nd
product ammonium simple_molecule nd nd
reactant ammonium_Ext simple_molecule nd nd
gadY_mRNA RNA:IS183
Name: gadY_mRNA -> RNA:IS183
Description: Translation of RNA:IS183
Type: translation
Pathway Components: gadY_mRNA -> RNA:IS183
Components:
Function Name Type Evidence Reference(s)
product RNA:IS183 protein nd nd
reactant gadY_mRNA RNA nd nd
gadBC_mRNA GadB
Name: gadBC_mRNA -> GadB
Description: Translation of GadB
Type: translation
Pathway Components: gadBC_mRNA -> GadB
Components:
Function Name Type Evidence Reference(s)
product GadB protein nd nd
reactant gadBC_mRNA RNA nd nd
GadA GadB L-glutamate GABA + CO2
Name: L-glutamate -> GABA + CO2
Description: Reaction transforming L-glutamate into GABA, CO2
Type: state transition
Pathway Components: L-glutamate - GadA - GadB -> GABA + CO2
Components:
Function Name Type Evidence Reference(s)
product CO2 simple_molecule nd nd
product GABA simple_molecule nd nd
catalyzer GadA protein nd nd
catalyzer GadB protein nd nd
reactant L-glutamate simple_molecule nd nd
gadBC_mRNA GadC
Name: gadBC_mRNA -> GadC
Description: Translation of GadC
Type: translation
Pathway Components: gadBC_mRNA -> GadC
Components:
Function Name Type Evidence Reference(s)
product GadC protein nd nd
reactant gadBC_mRNA RNA nd nd
GadC L-glutamate_Ext + GABA_Ext L-glutamate + GABA
Name: L-glutamate_Ext + GABA_Ext -> L-glutamate + GABA
Description: Transport of L-glutamate_Ext, GABA_Ext through a bacterial membrane, leading to the presence of L-glutamate, GABA inside the cell.
Type: transport
Pathway Components: L-glutamate_Ext + GABA_Ext - GadC -> L-glutamate + GABA
Components:
Function Name Type Evidence Reference(s)
product GABA simple_molecule nd nd
reactant GABA_Ext simple_molecule nd nd
catalyzer GadC protein nd nd
product L-glutamate simple_molecule nd nd
reactant L-glutamate_Ext simple_molecule nd nd
cadBA_mRNA CadB
Name: cadBA_mRNA -> CadB
Description: Translation of CadB
Type: translation
Pathway Components: cadBA_mRNA -> CadB
Components:
Function Name Type Evidence Reference(s)
product CadB protein nd nd
reactant cadBA_mRNA RNA nd nd
CadB lysine BioDex 1-_Ext BioDex 1-
Name: BioDex 1-_Ext -> BioDex 1-
Description: Transport of BioDex 1-_Ext through a bacterial membrane, leading to the presence of BioDex 1- inside the cell.
Type: transport
Pathway Components: BioDex 1-_Ext - CadB - lysine -> BioDex 1-
Components:
Function Name Type Evidence Reference(s)
product BioDex 1- simple_molecule nd nd
reactant BioDex 1-_Ext simple_molecule nd nd
catalyzer CadB protein nd nd
inhibitor lysine simple_molecule nd nd
CadB BioDex 1-_Ext + lysine_Ext BioDex 1- + lysine
Name: BioDex 1-_Ext + lysine_Ext -> BioDex 1- + lysine
Description: Transport of BioDex 1-_Ext, lysine_Ext through a bacterial membrane, leading to the presence of BioDex 1-, lysine inside the cell.
Type: transport
Pathway Components: BioDex 1-_Ext + lysine_Ext - CadB -> BioDex 1- + lysine
Components:
Function Name Type Evidence Reference(s)
product BioDex 1- simple_molecule nd nd
reactant BioDex 1-_Ext simple_molecule nd nd
catalyzer CadB protein nd nd
product lysine simple_molecule nd nd
reactant lysine_Ext simple_molecule nd nd
cadBA_mRNA CadA
Name: cadBA_mRNA -> CadA
Description: Translation of CadA
Type: translation
Pathway Components: cadBA_mRNA -> CadA
Components:
Function Name Type Evidence Reference(s)
product CadA protein nd nd
reactant cadBA_mRNA RNA nd nd
CadA lysine BioDex 1- + CO2
Name: lysine -> BioDex 1- + CO2
Description: Reaction transforming lysine into BioDex 1-, CO2
Type: state transition
Pathway Components: lysine - CadA -> BioDex 1- + CO2
Components:
Function Name Type Evidence Reference(s)
product BioDex 1- simple_molecule nd nd
product CO2 simple_molecule nd nd
catalyzer CadA protein nd nd
reactant lysine simple_molecule nd nd
ybaST_mRNA YbaS
Name: ybaST_mRNA -> YbaS
Description: Translation of YbaS
Type: translation
Pathway Components: ybaST_mRNA -> YbaS
Components:
Function Name Type Evidence Reference(s)
product YbaS protein nd nd
reactant ybaST_mRNA RNA nd nd
AsnB L-glutamate YbaS glutamine L-glutamate + ammonium
Name: glutamine -> L-glutamate + ammonium
Description: Reaction transforming glutamine into L-glutamate, ammonium
Type: state transition
Pathway Components: glutamine - AsnB - YbaS - L-glutamate -> L-glutamate + ammonium
Components:
Function Name Type Evidence Reference(s)
catalyzer AsnB protein nd nd
inhibitor L-glutamate simple_molecule nd nd
product L-glutamate simple_molecule nd nd
catalyzer YbaS protein nd nd
product ammonium simple_molecule nd nd
reactant glutamine simple_molecule nd nd
ybaST_mRNA YbaT
Name: ybaST_mRNA -> YbaT
Description: Translation of YbaT
Type: translation
Pathway Components: ybaST_mRNA -> YbaT
Components:
Function Name Type Evidence Reference(s)
product YbaT protein nd nd
reactant ybaST_mRNA RNA nd nd
gadX_mRNA GadX
Name: gadX_mRNA -> GadX
Description: Translation of GadX
Type: translation
Pathway Components: gadX_mRNA -> GadX
Components:
Function Name Type Evidence Reference(s)
product GadX protein nd nd
reactant gadX_mRNA RNA nd nd
slp-dctR_mRNA Slp
Name: slp-dctR_mRNA -> Slp
Description: Translation of Slp
Type: translation
Pathway Components: slp-dctR_mRNA -> Slp
Components:
Function Name Type Evidence Reference(s)
product Slp protein nd nd
reactant slp-dctR_mRNA RNA nd nd
slp-dctR_mRNA DctR
Name: slp-dctR_mRNA -> DctR
Description: Translation of DctR
Type: translation
Pathway Components: slp-dctR_mRNA -> DctR
Components:
Function Name Type Evidence Reference(s)
product DctR protein nd nd
reactant slp-dctR_mRNA RNA nd nd
gadAX_mRNA GadA
Name: gadAX_mRNA -> GadA
Description: Translation of GadA
Type: translation
Pathway Components: gadAX_mRNA -> GadA
Components:
Function Name Type Evidence Reference(s)
product GadA protein nd nd
reactant gadAX_mRNA RNA nd nd
gadAX_mRNA GadX
Name: gadAX_mRNA -> GadX
Description: Translation of GadX
Type: translation
Pathway Components: gadAX_mRNA -> GadX
Components:
Function Name Type Evidence Reference(s)
product GadX protein nd nd
reactant gadAX_mRNA RNA nd nd
uspE_mRNA UspE
Name: uspE_mRNA -> UspE
Description: Translation of UspE
Type: translation
Pathway Components: uspE_mRNA -> UspE
Components:
Function Name Type Evidence Reference(s)
product UspE protein nd nd
reactant uspE_mRNA RNA nd nd
lon_mRNA Lon
Name: lon_mRNA -> Lon
Description: Translation of Lon
Type: translation
Pathway Components: lon_mRNA -> Lon
Components:
Function Name Type Evidence Reference(s)
product Lon protein nd nd
reactant lon_mRNA RNA nd nd
Lon protein peptide
Name: protein -> peptide
Description: Reaction transforming protein into peptide
Type: state transition
Pathway Components: protein - Lon -> peptide
Components:
Function Name Type Evidence Reference(s)
catalyzer Lon protein nd nd
product peptide simple_molecule nd nd
reactant protein simple_molecule