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GadE Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
FPP ketoglutarate GABA GABA_Ext 6-p gluconate CO2 CyoA CyoB CyoC CyoD CyoE ribulose-5P FabZ FliC GDP GTP GadB GadC GadE GadW GadX GltB GltD GltF Gnd HdeA HdeB HdeD HlpA Imp asp L-glutamate L-glutamate_Ext L-glutamine LpxA LpxD Lrp MdtE MdtF PurA RcsA TolC UDP-2,3-diacyl-glucosamine UDP-3-O-(3-hydroxytetradecanoyl)glucosamine UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine UDP-GlcNAc YhiD beta-OH-acyl-ACP a (R)-3-hydroxy-cis-vaccenoyl-[acp] a (R)-3-hydroxybutanoyl-[acp] a (R)-3-hydroxydodecanoyl-[acp] a (R)-3-hydroxyoctanoyl-[acp] a 3R-hydroxy cis Delta;5-dodecenoyl-[acp] a 3R-hydroxy cis Delta;7-tetradecenoyl-[acp] a 3R-hydroxy cis Delta;9-hexadecenoyl-[acp] a 3R-hydroxyglutaryl-[acp] methyl ester a 3R-hydroxypimelyl-[acp] methyl ester a cis-vaccen-2-enoyl-[acp] a crotonyl-[acp] a drug a drug_Ext acyl carrier protein a trans dodec-2-enoyl-[acp] a trans hex-2-enoyl-[acp] a trans hexadecenoyl-[acp] a trans oct-2-enoyl-[acp] a trans tetradec-2-enoyl-[acp] a trans-Delta;2-decenoyl-[acp] a trans-Delta;3-cis-Delta;5-dodecenoyl-[acp] a trans-Delta;3-cis-Delta;7-tetradecenoyl-[acp] a trans-Delta;3-cis-Delta;9-hexadecenoyl-[acp] CH3(CH2)xCH=CHCO-S-ACP adenylo-succ ammonia an (3R)-3-hydroxymyristoyl-[acp] an (R)-3-hydroxydecanoyl-[acp] an (R)-3-hydroxyhexanoyl-[acp] an (R)-3-hydroxypalmitoyl-[acp] an enoylglutaryl-[acp] methyl ester an enoylpimelyl-[acp] methyl ester an ubiquinol_Ext ubiquinone cyoABCDE cyoABCDE_mRNA PP fliC fliC_mRNA gadBC gadBC_mRNA gadE gadE-mdtEF gadE-mdtEF_mRNA gadE_mRNA This Gensor Unit is not yet available This Gensor Unit is not yet available This Gensor Unit is not yet available This Gensor Unit is not yet available gltBDF gltBDF_mRNA gnd gnd_mRNA hdeAB-yhiD hdeAB-yhiD_mRNA hdeD hdeD_mRNA heme o This Gensor Unit is not yet available This Gensor Unit is not yet available lrp lrp_mRNA oxygen_Ext phosphate protoheme IX purA purA_mRNA rcsA rcsA_mRNA CyoD CyoA CyoB CyoC GltB GltD TolC MdtE MdtF a trans-Delta;3-cis-Delta;5-dodecenoyl-[acp]


Gensor Unit       
Name: GadE
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0043201 - response to leucine
GO:0071468 - cellular response to acidic pH
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0009486 - cytochrome bo3 ubiquinol oxidase activity
GO:0008495 - protoheme IX farnesyltransferase activity
GO:0050662 - coenzyme binding
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0004019 - adenylosuccinate synthase activity
GO:0016491 - oxidoreductase activity
GO:0051082 - unfolded protein binding
GO:0016020 - membrane
Read more >
Components:
Function Name Type
RNA rcsA_mRNA RNA


Reactions       
Showing 77 reactions
cyoABCDE cyoABCDE_mRNA
Name: cyoABCDE -> cyoABCDE_mRNA
Description: Transcription of transcription unit cyoABCDE; reaction inhibition by Cra.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant cyoABCDE gene nd nd
product cyoABCDE_mRNA RNA nd nd
fliC fliC_mRNA
Name: fliC -> fliC_mRNA
Description: Transcription of transcription unit fliC; reaction activation by GadE.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product fliC_mRNA RNA nd nd
reactant fliC gene nd nd
gadBC gadBC_mRNA
Name: gadBC -> gadBC_mRNA
Description: Transcription of transcription unit gadBC; reaction activation by AdiY.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant gadBC gene nd nd
product gadBC_mRNA RNA nd nd
gadE gadE_mRNA
Name: gadE -> gadE_mRNA
Description: Transcription of transcription unit gadE; reaction activation by GadE.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant gadE gene nd nd
product gadE_mRNA RNA nd nd
gadE-mdtEF gadE-mdtEF_mRNA
Name: gadE-mdtEF -> gadE-mdtEF_mRNA
Description: Transcription of transcription unit gadE-mdtEF; reaction activation by EvgA-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant gadE-mdtEF gene nd nd
product gadE-mdtEF_mRNA RNA nd nd
gadX gadX_mRNA
Name: gadX -> gadX_mRNA
Description: Transcription of transcription unit gadX; reaction activation by GadE.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product gadX_mRNA RNA nd nd
reactant gadX gene nd nd
gadXW gadXW_mRNA
Name: gadXW -> gadXW_mRNA
Description: Transcription of transcription unit gadXW; reaction activation by GadE.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product gadXW_mRNA RNA nd nd
reactant gadXW gene nd nd
gltBDF gltBDF_mRNA
Name: gltBDF -> gltBDF_mRNA
Description: Transcription of transcription unit gltBDF; reaction activation by AdiY.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant gltBDF gene nd nd
product gltBDF_mRNA RNA nd nd
gnd gnd_mRNA
Name: gnd -> gnd_mRNA
Description: Transcription of transcription unit gnd; reaction inhibition by Fur-Fe(II).
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product gnd_mRNA RNA nd nd
reactant gnd gene nd nd
hdeAB-yhiD hdeAB-yhiD_mRNA
Name: hdeAB-yhiD -> hdeAB-yhiD_mRNA
Description: Transcription of transcription unit hdeAB-yhiD; reaction inhibition by FliZ.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product hdeAB-yhiD_mRNA RNA nd nd
reactant hdeAB-yhiD gene nd nd
hdeD hdeD_mRNA
Name: hdeD -> hdeD_mRNA
Description: Transcription of transcription unit hdeD; reaction activation by GadE.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant hdeD gene nd nd
product hdeD_mRNA RNA nd nd
hlpA-lpxD-fabZ-lpxA hlpA-lpxD-fabZ-lpxA_mRNA
Name: hlpA-lpxD-fabZ-lpxA -> hlpA-lpxD-fabZ-lpxA_mRNA
Description: Transcription of transcription unit hlpA-lpxD-fabZ-lpxA; reaction activation by CpxR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product hlpA-lpxD-fabZ-lpxA_mRNA RNA nd nd
reactant hlpA-lpxD-fabZ-lpxA gene nd nd
lrp lrp_mRNA
Name: lrp -> lrp_mRNA
Description: Transcription of transcription unit lrp; reaction activation by GadE.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant lrp gene nd nd
product lrp_mRNA RNA nd nd
purA purA_mRNA
Name: purA -> purA_mRNA
Description: Transcription of transcription unit purA; reaction activation by GadE.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product purA_mRNA RNA nd nd
reactant purA gene nd nd
rcsA rcsA_mRNA
Name: rcsA -> rcsA_mRNA
Description: Transcription of transcription unit rcsA; reaction activation by GadE.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product rcsA_mRNA RNA nd nd
reactant rcsA gene nd nd
cyoABCDE_mRNA CyoE
Name: cyoABCDE_mRNA -> CyoE
Description: Translation of CyoE
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant cyoABCDE_mRNA RNA nd nd
product CyoE protein nd nd
protoheme IX + FPP heme o + PP
Name: protoheme IX + FPP -> heme o + PP
Description: Reaction transforming protoheme IX, FPP into heme o, PP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product PP simple molecule nd nd
product heme o simple molecule nd nd
reactant FPP simple molecule nd nd
reactant protoheme IX simple molecule nd nd
fliC_mRNA FliC
Name: fliC_mRNA -> FliC
Description: Translation of FliC
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant fliC_mRNA RNA nd nd
product FliC protein nd nd
gadE-mdtEF_mRNA GadE
Name: gadE-mdtEF_mRNA -> GadE
Description: Translation of GadE
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gadE-mdtEF_mRNA RNA nd nd
product GadE protein nd nd
hlpA-lpxD-fabZ-lpxA_mRNA LpxA
Name: hlpA-lpxD-fabZ-lpxA_mRNA -> LpxA
Description: Translation of LpxA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant hlpA-lpxD-fabZ-lpxA_mRNA RNA nd nd
product LpxA protein nd nd
an (3R)-3-hydroxymyristoyl-[acp] + UDP-GlcNAc UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine + ACP
Name: an (3R)-3-hydroxymyristoyl-[acp] + UDP-GlcNAc -> UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine + ACP
Description: Reaction transforming an (3R)-3-hydroxymyristoyl-[acp], UDP-GlcNAc into UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine, ACP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant an (3R)-3-hydroxymyristoyl-[acp] simple molecule nd nd
reactant UDP-GlcNAc simple molecule nd nd
product ACP simple molecule nd nd
product UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine simple molecule nd nd
lrp_mRNA Lrp
Name: lrp_mRNA -> Lrp
Description: Translation of Lrp
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant lrp_mRNA RNA nd nd
product Lrp protein nd nd
cyoABCDE_mRNA CyoD
Name: cyoABCDE_mRNA -> CyoD
Description: Translation of CyoD
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant cyoABCDE_mRNA RNA nd nd
product CyoD protein nd nd
CyoD + CyoA + CyoB + CyoC CyoD-CyoA-CyoB-CyoC
Name: CyoD + CyoA + CyoB + CyoC -> CyoD-CyoA-CyoB-CyoC
Description: Reaction transforming CyoD, CyoA, CyoB, CyoC into CyoD-CyoA-CyoB-CyoC
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant CyoC protein nd nd
product CyoD-CyoA-CyoB-CyoC complex nd nd
reactant CyoB protein nd nd
reactant CyoD protein nd nd
reactant CyoA protein nd nd
oxygen_Ext + an ubiquinol_Ext ubiquinone
Name: oxygen_Ext + an ubiquinol_Ext -> ubiquinone
Description: Transport of oxygen_Ext, an ubiquinol_Ext through a bacterial membrane, leading to the presence of ubiquinone inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant an ubiquinol_Ext simple molecule nd nd
reactant oxygen_Ext simple molecule nd nd
product ubiquinone simple molecule nd nd
gadBC_mRNA GadB
Name: gadBC_mRNA -> GadB
Description: Translation of GadB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gadBC_mRNA RNA nd nd
product GadB protein nd nd
L-glutamate CO2 + GABA
Name: L-glutamate -> CO2 + GABA
Description: Reaction transforming L-glutamate into CO2, GABA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product CO2 simple molecule nd nd
product GABA simple molecule nd nd
reactant L-glutamate simple molecule nd nd
hdeD_mRNA HdeD
Name: hdeD_mRNA -> HdeD
Description: Translation of HdeD
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant hdeD_mRNA RNA nd nd
product HdeD protein nd nd
hlpA-lpxD-fabZ-lpxA_mRNA LpxD
Name: hlpA-lpxD-fabZ-lpxA_mRNA -> LpxD
Description: Translation of LpxD
Type: translation
Components:
Function Name Type Evidence Reference(s)
product LpxD protein nd nd
reactant hlpA-lpxD-fabZ-lpxA_mRNA RNA nd nd
an (3R)-3-hydroxymyristoyl-[acp] + UDP-3-O-(3-hydroxytetradecanoyl)glucosamine UDP-2,3-diacyl-glucosamine + ACP
Name: an (3R)-3-hydroxymyristoyl-[acp] + UDP-3-O-(3-hydroxytetradecanoyl)glucosamine -> UDP-2,3-diacyl-glucosamine + ACP
Description: Reaction transforming an (3R)-3-hydroxymyristoyl-[acp], UDP-3-O-(3-hydroxytetradecanoyl)glucosamine into UDP-2,3-diacyl-glucosamine, ACP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product UDP-2,3-diacyl-glucosamine simple molecule nd nd
reactant an (3R)-3-hydroxymyristoyl-[acp] simple molecule nd nd
reactant UDP-3-O-(3-hydroxytetradecanoyl)glucosamine simple molecule nd nd
product ACP simple molecule nd nd
gadXW_mRNA GadW
Name: gadXW_mRNA -> GadW
Description: Translation of GadW
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gadXW_mRNA RNA nd nd
product GadW protein nd nd
cyoABCDE_mRNA CyoB
Name: cyoABCDE_mRNA -> CyoB
Description: Translation of CyoB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant cyoABCDE_mRNA RNA nd nd
product CyoB protein nd nd
gltBDF_mRNA GltD
Name: gltBDF_mRNA -> GltD
Description: Translation of GltD
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GltD protein nd nd
reactant gltBDF_mRNA RNA nd nd
GltB + GltD GltB-GltD
Name: GltB + GltD -> GltB-GltD
Description: Reaction transforming GltB, GltD into GltB-GltD
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant GltB protein nd nd
product GltB-GltD complex nd nd
reactant GltD protein nd nd
L-glutamate L-glutamine + ketoglutarate
Name: L-glutamate -> L-glutamine + ketoglutarate
Description: Reaction transforming L-glutamate into L-glutamine, ketoglutarate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product L-glutamine simple molecule nd nd
product ketoglutarate simple molecule nd nd
reactant L-glutamate simple molecule nd nd
L-glutamine L-glutamate + ammonia
Name: L-glutamine -> L-glutamate + ammonia
Description: Reaction transforming L-glutamine into L-glutamate, ammonia
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product L-glutamate simple molecule nd nd
reactant L-glutamine simple molecule nd nd
product ammonia simple molecule nd nd
L-glutamate ketoglutarate + ammonia
Name: L-glutamate -> ketoglutarate + ammonia
Description: Reaction transforming L-glutamate into ketoglutarate, ammonia
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant L-glutamate simple molecule nd nd
product ketoglutarate simple molecule nd nd
product ammonia simple molecule nd nd
gnd_mRNA Gnd
Name: gnd_mRNA -> Gnd
Description: Translation of Gnd
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gnd_mRNA RNA nd nd
product Gnd protein nd nd
6-p gluconate ribulose-5P + CO2
Name: 6-p gluconate -> ribulose-5P + CO2
Description: Reaction transforming 6-p gluconate into ribulose-5P, CO2
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant 6-p gluconate simple molecule nd nd
product ribulose-5P simple molecule nd nd
product CO2 simple molecule nd nd
rcsA_mRNA RcsA
Name: rcsA_mRNA -> RcsA
Description: Translation of RcsA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product RcsA protein nd nd
reactant rcsA_mRNA RNA nd nd
gltBDF_mRNA GltF
Name: gltBDF_mRNA -> GltF
Description: Translation of GltF
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GltF protein nd nd
reactant gltBDF_mRNA RNA nd nd
hdeAB-yhiD_mRNA YhiD
Name: hdeAB-yhiD_mRNA -> YhiD
Description: Translation of YhiD
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant hdeAB-yhiD_mRNA RNA nd nd
product YhiD protein nd nd
gadE-mdtEF_mRNA MdtE
Name: gadE-mdtEF_mRNA -> MdtE
Description: Translation of MdtE
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gadE-mdtEF_mRNA RNA nd nd
product MdtE protein nd nd
TolC + MdtE + MdtF TolC-MdtE-MdtF
Name: TolC + MdtE + MdtF -> TolC-MdtE-MdtF
Description: Reaction transforming TolC, MdtE, MdtF into TolC-MdtE-MdtF
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product TolC-MdtE-MdtF complex nd nd
reactant MdtF protein nd nd
reactant TolC protein nd nd
reactant MdtE protein nd nd
a drug_Ext a drug
Name: a drug_Ext -> a drug
Description: Transport of a drug_Ext through a bacterial membrane, leading to the presence of a drug inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant a drug_Ext simple molecule nd nd
product a drug simple molecule nd nd
gadBC_mRNA GadC
Name: gadBC_mRNA -> GadC
Description: Translation of GadC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GadC protein nd nd
reactant gadBC_mRNA RNA nd nd
GABA_Ext + L-glutamate_Ext L-glutamate + GABA
Name: GABA_Ext + L-glutamate_Ext -> L-glutamate + GABA
Description: Transport of GABA_Ext, L-glutamate_Ext through a bacterial membrane, leading to the presence of L-glutamate, GABA inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant GABA_Ext simple molecule nd nd
product GABA simple molecule nd nd
product L-glutamate simple molecule nd nd
reactant L-glutamate_Ext simple molecule nd nd
hlpA-lpxD-fabZ-lpxA_mRNA HlpA
Name: hlpA-lpxD-fabZ-lpxA_mRNA -> HlpA
Description: Translation of HlpA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product HlpA protein nd nd
reactant hlpA-lpxD-fabZ-lpxA_mRNA RNA nd nd
hlpA-lpxD-fabZ-lpxA_mRNA FabZ
Name: hlpA-lpxD-fabZ-lpxA_mRNA -> FabZ
Description: Translation of FabZ
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FabZ protein nd nd
reactant hlpA-lpxD-fabZ-lpxA_mRNA RNA nd nd
a 3R-hydroxyglutaryl-[acp] methyl ester an enoylglutaryl-[acp] methyl ester
Name: a 3R-hydroxyglutaryl-[acp] methyl ester -> an enoylglutaryl-[acp] methyl ester
Description: Reaction transforming a 3R-hydroxyglutaryl-[acp] methyl ester into an enoylglutaryl-[acp] methyl ester
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a 3R-hydroxyglutaryl-[acp] methyl ester simple molecule nd nd
product an enoylglutaryl-[acp] methyl ester simple molecule nd nd
a 3R-hydroxypimelyl-[acp] methyl ester an enoylpimelyl-[acp] methyl ester
Name: a 3R-hydroxypimelyl-[acp] methyl ester -> an enoylpimelyl-[acp] methyl ester
Description: Reaction transforming a 3R-hydroxypimelyl-[acp] methyl ester into an enoylpimelyl-[acp] methyl ester
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a 3R-hydroxypimelyl-[acp] methyl ester simple molecule nd nd
product an enoylpimelyl-[acp] methyl ester simple molecule nd nd
beta-OH-acyl-ACP CH3(CH2)xCH=CHCO-S-ACP
Name: beta-OH-acyl-ACP -> CH3(CH2)xCH=CHCO-S-ACP
Description: Reaction transforming beta-OH-acyl-ACP into CH3(CH2)xCH=CHCO-S-ACP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant beta-OH-acyl-ACP simple molecule nd nd
product CH3(CH2)xCH=CHCO-S-ACP simple molecule nd nd
an (3R)-3-hydroxymyristoyl-[acp] a trans tetradec-2-enoyl-[acp]
Name: an (3R)-3-hydroxymyristoyl-[acp] -> a trans tetradec-2-enoyl-[acp]
Description: Reaction transforming an (3R)-3-hydroxymyristoyl-[acp] into a trans tetradec-2-enoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product a trans tetradec-2-enoyl-[acp] simple molecule nd nd
reactant an (3R)-3-hydroxymyristoyl-[acp] simple molecule nd nd
a (R)-3-hydroxydodecanoyl-[acp] a trans dodec-2-enoyl-[acp]
Name: a (R)-3-hydroxydodecanoyl-[acp] -> a trans dodec-2-enoyl-[acp]
Description: Reaction transforming a (R)-3-hydroxydodecanoyl-[acp] into a trans dodec-2-enoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a (R)-3-hydroxydodecanoyl-[acp] simple molecule nd nd
product a trans dodec-2-enoyl-[acp] simple molecule nd nd
an (R)-3-hydroxyhexanoyl-[acp] a trans hex-2-enoyl-[acp]
Name: an (R)-3-hydroxyhexanoyl-[acp] -> a trans hex-2-enoyl-[acp]
Description: Reaction transforming an (R)-3-hydroxyhexanoyl-[acp] into a trans hex-2-enoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant an (R)-3-hydroxyhexanoyl-[acp] simple molecule nd nd
product a trans hex-2-enoyl-[acp] simple molecule nd nd
a (R)-3-hydroxyoctanoyl-[acp] a trans oct-2-enoyl-[acp]
Name: a (R)-3-hydroxyoctanoyl-[acp] -> a trans oct-2-enoyl-[acp]
Description: Reaction transforming a (R)-3-hydroxyoctanoyl-[acp] into a trans oct-2-enoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a (R)-3-hydroxyoctanoyl-[acp] simple molecule nd nd
product a trans oct-2-enoyl-[acp] simple molecule nd nd
a (R)-3-hydroxy-cis-vaccenoyl-[acp] a cis-vaccen-2-enoyl-[acp]
Name: a (R)-3-hydroxy-cis-vaccenoyl-[acp] -> a cis-vaccen-2-enoyl-[acp]
Description: Reaction transforming a (R)-3-hydroxy-cis-vaccenoyl-[acp] into a cis-vaccen-2-enoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a (R)-3-hydroxy-cis-vaccenoyl-[acp] simple molecule nd nd
product a cis-vaccen-2-enoyl-[acp] simple molecule nd nd
an (R)-3-hydroxypalmitoyl-[acp] a trans hexadecenoyl-[acp]
Name: an (R)-3-hydroxypalmitoyl-[acp] -> a trans hexadecenoyl-[acp]
Description: Reaction transforming an (R)-3-hydroxypalmitoyl-[acp] into a trans hexadecenoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant an (R)-3-hydroxypalmitoyl-[acp] simple molecule nd nd
product a trans hexadecenoyl-[acp] simple molecule nd nd
a (R)-3-hydroxybutanoyl-[acp] a crotonyl-[acp]
Name: a (R)-3-hydroxybutanoyl-[acp] -> a crotonyl-[acp]
Description: Reaction transforming a (R)-3-hydroxybutanoyl-[acp] into a crotonyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a (R)-3-hydroxybutanoyl-[acp] simple molecule nd nd
product a crotonyl-[acp] simple molecule nd nd
purA_mRNA PurA
Name: purA_mRNA -> PurA
Description: Translation of PurA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant purA_mRNA RNA nd nd
product PurA protein nd nd
asp + IMP + GTP adenylo-succ + phosphate + GDP
Name: asp + IMP + GTP -> adenylo-succ + phosphate + GDP
Description: Reaction transforming asp, IMP, GTP into adenylo-succ, phosphate , GDP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product adenylo-succ simple molecule nd nd
product phosphate simple molecule nd nd
product GDP simple molecule nd nd
reactant asp simple molecule nd nd
reactant GTP simple molecule nd nd
reactant IMP simple molecule nd nd
cyoABCDE_mRNA CyoC
Name: cyoABCDE_mRNA -> CyoC
Description: Translation of CyoC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product CyoC protein nd nd
reactant cyoABCDE_mRNA RNA nd nd
cyoABCDE_mRNA CyoA
Name: cyoABCDE_mRNA -> CyoA
Description: Translation of CyoA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product CyoA protein nd nd
reactant cyoABCDE_mRNA RNA nd nd
gadXW_mRNA GadX
Name: gadXW_mRNA -> GadX
Description: Translation of GadX
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GadX protein nd nd
reactant gadXW_mRNA RNA nd nd
gadE-mdtEF_mRNA MdtF
Name: gadE-mdtEF_mRNA -> MdtF
Description: Translation of MdtF
Type: translation
Components:
Function Name Type Evidence Reference(s)
product MdtF protein nd nd
reactant gadE-mdtEF_mRNA RNA nd nd
hdeAB-yhiD_mRNA HdeB
Name: hdeAB-yhiD_mRNA -> HdeB
Description: Translation of HdeB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant hdeAB-yhiD_mRNA RNA nd nd
product HdeB protein nd nd
hdeAB-yhiD_mRNA HdeA
Name: hdeAB-yhiD_mRNA -> HdeA
Description: Translation of HdeA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant hdeAB-yhiD_mRNA RNA nd nd
product HdeA protein nd nd
gltBDF_mRNA GltB
Name: gltBDF_mRNA -> GltB
Description: Translation of GltB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gltBDF_mRNA RNA nd nd
product GltB protein nd nd
gadX_mRNA GadX
Name: gadX_mRNA -> GadX
Description: Translation of GadX
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gadX_mRNA RNA nd nd
product GadX protein nd nd
gadE_mRNA GadE
Name: gadE_mRNA -> GadE
Description: Translation of GadE
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gadE_mRNA RNA nd nd
product GadE protein nd nd
a trans dodec-2-enoyl-[acp] an (3R)-3-hydroxymyristoyl-[acp]
Name: a trans dodec-2-enoyl-[acp] -> an (3R)-3-hydroxymyristoyl-[acp]
Description: Transformation of a trans dodec-2-enoyl-[acp] into an (3R)-3-hydroxymyristoyl-[acp] by one, or two/three reactions not shown.
Type: super-reaction
Components:
Function Name Type Evidence Reference(s)
product an (3R)-3-hydroxymyristoyl-[acp] simple molecule nd nd
reactant a trans dodec-2-enoyl-[acp] simple molecule nd nd
a trans tetradec-2-enoyl-[acp] an (R)-3-hydroxypalmitoyl-[acp]
Name: a trans tetradec-2-enoyl-[acp] -> an (R)-3-hydroxypalmitoyl-[acp]
Description: Transformation of a trans tetradec-2-enoyl-[acp] into an (R)-3-hydroxypalmitoyl-[acp] by one, or two/three reactions not shown.
Type: super-reaction
Components:
Function Name Type Evidence Reference(s)
product an (R)-3-hydroxypalmitoyl-[acp] simple molecule nd nd
reactant a trans tetradec-2-enoyl-[acp] simple molecule nd nd
an enoylglutaryl-[acp] methyl ester a 3R-hydroxypimelyl-[acp] methyl ester
Name: an enoylglutaryl-[acp] methyl ester -> a 3R-hydroxypimelyl-[acp] methyl ester
Description: Transformation of an enoylglutaryl-[acp] methyl ester into a 3R-hydroxypimelyl-[acp] methyl ester by one, or two/three reactions not shown.
Type: super-reaction
Components:
Function Name Type Evidence Reference(s)
product a 3R-hydroxypimelyl-[acp] methyl ester simple molecule nd nd
reactant an enoylglutaryl-[acp] methyl ester simple molecule nd nd
a crotonyl-[acp] an (R)-3-hydroxyhexanoyl-[acp]
Name: a crotonyl-[acp] -> an (R)-3-hydroxyhexanoyl-[acp]
Description: Transformation of a crotonyl-[acp] into an (R)-3-hydroxyhexanoyl-[acp] by one, or two/three reactions not shown.
Type: super-reaction
Components:
Function Name Type Evidence Reference(s)
reactant a crotonyl-[acp] simple molecule nd nd
product an (R)-3-hydroxyhexanoyl-[acp] simple molecule nd nd
a trans hex-2-enoyl-[acp] a (R)-3-hydroxyoctanoyl-[acp]
Name: a trans hex-2-enoyl-[acp] -> a (R)-3-hydroxyoctanoyl-[acp]
Description: Transformation of a trans hex-2-enoyl-[acp] into a (R)-3-hydroxyoctanoyl-[acp] by one, or two/three reactions not shown.
Type: super-reaction
Components:
Function Name Type Evidence Reference(s)
reactant a trans hex-2-enoyl-[acp] simple molecule nd nd
product a (R)-3-hydroxyoctanoyl-[acp] simple molecule nd nd
UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine UDP-3-O-(3-hydroxytetradecanoyl)glucosamine
Name: UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine -> UDP-3-O-(3-hydroxytetradecanoyl)glucosamine
Description: Transformation of UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine into UDP-3-O-(3-hydroxytetradecanoyl)glucosamine by one, or two/three reactions not shown.
Type: super-reaction
Components:
Function Name Type Evidence Reference(s)
product UDP-3-O-(3-hydroxytetradecanoyl)glucosamine simple molecule nd nd
reactant UDP-3-O-(3-hydroxymyristoyl)-N-acetylglucosamine simple molecule nd nd
a trans oct-2-enoyl-[acp] an (R)-3-hydroxydecanoyl-[acp]
Name: a trans oct-2-enoyl-[acp] -> an (R)-3-hydroxydecanoyl-[acp]
Description: Transformation of a trans oct-2-enoyl-[acp] into an (R)-3-hydroxydecanoyl-[acp] by one, or two/three reactions not shown.
Type: super-reaction
Components:
Function Name Type Evidence Reference(s)
product an (R)-3-hydroxydecanoyl-[acp] simple molecule nd nd
reactant a trans oct-2-enoyl-[acp] simple molecule nd nd