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GadE-RcsB Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
4-aminobutanoate AdiC AslB CO2 CadA CadB DctR GadA GadE RcsB GadX L-arginine L-arginine_Ext L-glutamate L-lysine L-lysine_Ext Slp YhiM adiC adiC_mRNA agmatine agmatine_Ext aslB aslB_mRNA cadBA cadBA_mRNA cadaverine cadaverine_Ext gadAX gadAX_mRNA slp-dctR slp-dctR_mRNA yhiM yhiM_mRNA GadE RcsB


Gensor Unit       
Name: GadE-RcsB
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0016491 - oxidoreductase activity
GO:0016020 - membrane
GO:0003824 - catalytic activity
GO:0005887 - integral component of plasma membrane
GO:0016829 - lyase activity
GO:0019752 - carboxylic acid metabolic process
GO:0005737 - cytoplasm
GO:0003333 - amino acid transmembrane transport
GO:0008923 - lysine decarboxylase activity
GO:0005829 - cytosol
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Components:
Function Name Type
RNA yhiM_mRNA RNA


Reactions       
Showing 20 reactions
adiC adiC_mRNA
Name: adiC -> adiC_mRNA
Description: Transcription of transcription unit adiC; reaction activation by GadE-RcsB.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product adiC_mRNA RNA nd nd
reactant adiC gene nd nd
aslB aslB_mRNA
Name: aslB -> aslB_mRNA
Description: Transcription of transcription unit aslB; reaction activation by GadE-RcsB.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant aslB gene nd nd
product aslB_mRNA RNA nd nd
cadBA cadBA_mRNA
Name: cadBA -> cadBA_mRNA
Description: Transcription of transcription unit cadBA; reaction activation by CadC.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product cadBA_mRNA RNA nd nd
reactant cadBA gene nd nd
gadAX gadAX_mRNA
Name: gadAX -> gadAX_mRNA
Description: Transcription of transcription unit gadAX; reaction activation by AdiY.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant gadAX gene nd nd
product gadAX_mRNA RNA nd nd
slp-dctR slp-dctR_mRNA
Name: slp-dctR -> slp-dctR_mRNA
Description: Transcription of transcription unit slp-dctR; reaction activation by GadE-RcsB.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant slp-dctR gene nd nd
product slp-dctR_mRNA RNA nd nd
yhiM yhiM_mRNA
Name: yhiM -> yhiM_mRNA
Description: Transcription of transcription unit yhiM; reaction activation by GadE-RcsB.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product yhiM_mRNA RNA nd nd
reactant yhiM gene nd nd
adiC_mRNA AdiC
Name: adiC_mRNA -> AdiC
Description: Translation of AdiC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product AdiC protein nd nd
reactant adiC_mRNA RNA nd nd
agmatine_Ext + L-arginine_Ext agmatine + L-arginine
Name: agmatine_Ext + L-arginine_Ext -> agmatine + L-arginine
Description: Transport of agmatine_Ext, L-arginine_Ext through a bacterial membrane, leading to the presence of agmatine, L-arginine inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product agmatine simple molecule nd nd
reactant agmatine_Ext simple molecule nd nd
product L-arginine simple molecule nd nd
reactant L-arginine_Ext simple molecule nd nd
cadBA_mRNA CadB
Name: cadBA_mRNA -> CadB
Description: Translation of CadB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product CadB protein nd nd
reactant cadBA_mRNA RNA nd nd
BioDex 1-_Ext BioDex 1-
Name: BioDex 1-_Ext -> BioDex 1-
Description: Transport of BioDex 1-_Ext through a bacterial membrane, leading to the presence of BioDex 1- inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product BioDex 1- simple molecule nd nd
reactant BioDex 1-_Ext simple molecule nd nd
BioDex 1-_Ext + L-lysine_Ext BioDex 1- + L-lysine
Name: BioDex 1-_Ext + L-lysine_Ext -> BioDex 1- + L-lysine
Description: Transport of BioDex 1-_Ext, L-lysine_Ext through a bacterial membrane, leading to the presence of BioDex 1-, L-lysine inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant BioDex 1-_Ext simple molecule nd nd
product BioDex 1- simple molecule nd nd
product L-lysine simple molecule nd nd
reactant L-lysine_Ext simple molecule nd nd
slp-dctR_mRNA Slp
Name: slp-dctR_mRNA -> Slp
Description: Translation of Slp
Type: translation
Components:
Function Name Type Evidence Reference(s)
product Slp protein nd nd
reactant slp-dctR_mRNA RNA nd nd
slp-dctR_mRNA DctR
Name: slp-dctR_mRNA -> DctR
Description: Translation of DctR
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant slp-dctR_mRNA RNA nd nd
product DctR protein nd nd
yhiM_mRNA YhiM
Name: yhiM_mRNA -> YhiM
Description: Translation of YhiM
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant yhiM_mRNA RNA nd nd
product YhiM protein nd nd
aslB_mRNA AslB
Name: aslB_mRNA -> AslB
Description: Translation of AslB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product AslB protein nd nd
reactant aslB_mRNA RNA nd nd
cadBA_mRNA CadA
Name: cadBA_mRNA -> CadA
Description: Translation of CadA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product CadA protein nd nd
reactant cadBA_mRNA RNA nd nd
L-lysine CO2 + BioDex 1-
Name: L-lysine -> CO2 + BioDex 1-
Description: Reaction transforming L-lysine into CO2, BioDex 1-
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product CO2 simple molecule nd nd
reactant L-lysine simple molecule nd nd
product BioDex 1- simple molecule nd nd
gadAX_mRNA GadX
Name: gadAX_mRNA -> GadX
Description: Translation of GadX
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gadAX_mRNA RNA nd nd
product GadX protein nd nd
gadAX_mRNA GadA
Name: gadAX_mRNA -> GadA
Description: Translation of GadA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GadA protein nd nd
reactant gadAX_mRNA RNA nd nd
L-glutamate CO2 + GABA
Name: L-glutamate -> CO2 + GABA
Description: Reaction transforming L-glutamate into CO2, GABA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product CO2 simple molecule nd nd
product GABA simple molecule nd nd
reactant L-glutamate simple molecule nd nd



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