RegulonDB RegulonDB

FhlA Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
HypA HyfH formate CO2 HydN HycG hyfABCDEFGHIJR-focB HyfI electron diphosphate HycD HypE-S-cyanate HyfE HypC hyfABCDEFGHIJR-focB_mRNA HycF HypE reduced hydrogenase 3 precursor of large subunit of hydrogenase 3 HyfG fdhF HycF HyfB HyfF HyfC HycC HypF HycB HyfF A(H2) HycG HydB HycG FdhF HypA HycD guanosine-diphosphate HycF hydN-hypF_mRNA HycB oxidized hydrogenase 3 hycABCDEFGHI_mRNA HyfI phosphate HyfR HyfH HypD HyfD FocB carbamoyl-P fdhF_mRNA HycI hycABCDEFGHI HycE HypD HycB hypABCDE-fhlA_mRNA O-carbamoyladenylate hypABCDE HycC HycA HypC HyfC hypABCDE_mRNA large subunit of hydrogenase 3 guanosine-triphosphate hydN-hypF HycD FhlA HycE HyfJ HyfA FdhF hydrogen FhlA HyfE HycC HyfA HypB HyfD formate HycH acceptors hypABCDE-fhlA HycE HyfG HyfB C terminal 32 amino-acid peptide HypB formate CO2 phosphate


Gensor Unit       
Name: FhlA
Description: Molecular biology level
Detailed: In the presence of formate, FhlA positively regulates the expression of genes ne required for formate transport and conversion to CO2 and maturation of hydrogenase isoenzymes. Under these conditions, FhlA is modified to FhlA-formate, binds its target sites and enables the expression of its regulated genes.
Less detailed: In the presence of formate, FhlA positively regulates the expression of genes needed for formate transport and conversion to CO2 and protein maturation.

Physiology level
Detailed: The presence of formate induces the expression of genes needful for formate transport and oxidation and protein maduration.
Less detailed: The presence of formate induces the expression of genes involved with formate transport and oxidation and protein maduration. Under these conditions the genes involved with for formate transport and conversion to CO2, and maturation of hydrogenases by carbamoylation and biosynthesis of cofactor, are expressed.
Classification:
Groups: General function prediction only
Inorganic ion transport and metabolism
Posttranslational modification, protein turnover, chaperones
Transcription
Energy production and conversion
Signal transduction mechanisms
Gene Ontology Terms (GO): biological_process GO:0042773 - ATP synthesis coupled electron transport
GO:0006352 - DNA-templated transcription, initiation
GO:0006464 - cellular protein modification process
GO:0034622 - cellular protein-containing complex assembly
GO:0006974 - cellular response to DNA damage stimulus
GO:0022900 - electron transport chain
Read more >
cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0031234 - extrinsic component of cytoplasmic side of plasma membrane
GO:0009375 - ferredoxin hydrogenase complex
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
GO:0005622 - intracellular anatomical structure
Read more >
molecular_function GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0005524 - ATP binding
GO:0003677 - DNA binding
GO:0005525 - GTP binding
GO:0003924 - GTPase activity
GO:0051287 - NAD binding
GO:0008137 - NADH dehydrogenase (ubiquinone) activity
Read more >
Components:
  Function Name Type
  simple_molecule A(H2) simple_molecule
  simple_molecule C terminal 32 amino-acid peptide simple_molecule
  simple_molecule CO2 simple_molecule
  protein FdhF protein
  complex FdhF-HycE-HycB-HycG-HycF-HycC-HycD complex
  protein FhlA protein
  complex FhlA-formate complex
  protein FocB protein
  protein HycA protein
  protein HycB protein
  protein HycC protein
  protein HycD protein
  complex HycD-HycC-HycF-HycG-HycB-HycE complex
  protein HycE protein
  protein HycF protein
  protein HycG protein
  protein HycH protein
  protein HycI protein
  simple_molecule HydB simple_molecule
  protein HydN protein
  protein HyfA protein
  protein HyfB protein
  protein HyfC protein
  protein HyfD protein
  protein HyfE protein
  protein HyfF protein
  protein HyfG protein
  complex HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH complex
  protein HyfH protein
  protein HyfI protein
  protein HyfJ protein
  protein HyfR protein
  protein HypA protein
  complex HypA-HypB complex
  protein HypB protein
  protein HypC protein
  protein HypD protein
  complex HypD-HypC complex
  protein HypE protein
  simple_molecule HypE-S-cyanate simple_molecule
  protein HypF protein
  simple_molecule O-carbamoyladenylate simple_molecule
  simple_molecule acceptors simple_molecule
  simple_molecule carbamoyl-P simple_molecule
  simple_molecule diphosphate simple_molecule
  simple_molecule electron simple_molecule
  gene fdhF gene
  RNA fdhF_mRNA RNA
  simple_molecule formate simple_molecule
  simple_molecule guanosine-diphosphate simple_molecule
  simple_molecule guanosine-triphosphate simple_molecule
  gene hycABCDEFGHI gene
  RNA hycABCDEFGHI_mRNA RNA
  gene hydN-hypF gene
  RNA hydN-hypF_mRNA RNA
  simple_molecule hydrogen simple_molecule
  gene hyfABCDEFGHIJR-focB gene
  RNA hyfABCDEFGHIJR-focB_mRNA RNA
  gene hypABCDE gene
  gene hypABCDE-fhlA gene
  RNA hypABCDE-fhlA_mRNA RNA
  RNA hypABCDE_mRNA RNA
  simple_molecule large subunit of hydrogenase 3 simple_molecule
  simple_molecule oxidized hydrogenase 3 simple_molecule
  simple_molecule phosphate simple_molecule
  simple_molecule precursor of large subunit of hydrogenase 3 simple_molecule
  simple_molecule reduced hydrogenase 3 simple_molecule


Reactions       
Showing 58 reactions
formate + FhlA FhlA-formate
Name: formate + FhlA -> FhlA-formate
Description: Reaction transforming formate, FhlA into FhlA-formate
Type: state transition
Pathway Components: formate + FhlA -> FhlA-formate
Components:
Function Name Type
reactant FhlA protein
product FhlA-formate complex
reactant formate simple_molecule
FhlA-formate fdhF fdhF_mRNA
Name: fdhF -> fdhF_mRNA
Description: Transcription of transcription unit fdhF. Reaction activation by FhlA-formate.
Type: transcription
Pathway Components: fdhF - FhlA-formate -> fdhF_mRNA
Components:
Function Name Type
activator FhlA-formate complex
reactant fdhF gene
product fdhF_mRNA RNA
FhlA-formate hycABCDEFGHI hycABCDEFGHI_mRNA
Name: hycABCDEFGHI -> hycABCDEFGHI_mRNA
Description: Transcription of transcription unit hycABCDEFGHI. Reaction activation by FhlA-formate.
Type: transcription
Pathway Components: hycABCDEFGHI - FhlA-formate -> hycABCDEFGHI_mRNA
Components:
Function Name Type
activator FhlA-formate complex
reactant hycABCDEFGHI gene
product hycABCDEFGHI_mRNA RNA
FhlA-formate hydN-hypF hydN-hypF_mRNA
Name: hydN-hypF -> hydN-hypF_mRNA
Description: Transcription of transcription unit hydN-hypF. Reaction activation by FhlA-formate.
Type: transcription
Pathway Components: hydN-hypF - FhlA-formate -> hydN-hypF_mRNA
Components:
Function Name Type
activator FhlA-formate complex
reactant hydN-hypF gene
product hydN-hypF_mRNA RNA
FhlA-formate hyfABCDEFGHIJR-focB hyfABCDEFGHIJR-focB_mRNA
Name: hyfABCDEFGHIJR-focB -> hyfABCDEFGHIJR-focB_mRNA
Description: Transcription of transcription unit hyfABCDEFGHIJR-focB. Reaction activation by FhlA-formate.
Type: transcription
Pathway Components: hyfABCDEFGHIJR-focB - FhlA-formate -> hyfABCDEFGHIJR-focB_mRNA
Components:
Function Name Type
activator FhlA-formate complex
reactant hyfABCDEFGHIJR-focB gene
product hyfABCDEFGHIJR-focB_mRNA RNA
FhlA-formate hypABCDE hypABCDE_mRNA
Name: hypABCDE -> hypABCDE_mRNA
Description: Transcription of transcription unit hypABCDE. Reaction activation by FhlA-formate.
Type: transcription
Pathway Components: hypABCDE - FhlA-formate -> hypABCDE_mRNA
Components:
Function Name Type
activator FhlA-formate complex
reactant hypABCDE gene
product hypABCDE_mRNA RNA
FhlA-formate hypABCDE-fhlA hypABCDE-fhlA_mRNA
Name: hypABCDE-fhlA -> hypABCDE-fhlA_mRNA
Description: Transcription of transcription unit hypABCDE-fhlA. Reaction activation by FhlA-formate.
Type: transcription
Pathway Components: hypABCDE-fhlA - FhlA-formate -> hypABCDE-fhlA_mRNA
Components:
Function Name Type
activator FhlA-formate complex
reactant hypABCDE-fhlA gene
product hypABCDE-fhlA_mRNA RNA
fdhF_mRNA FdhF
Name: fdhF_mRNA -> FdhF
Description: Translation of FdhF
Type: translation
Pathway Components: fdhF_mRNA -> FdhF
Components:
Function Name Type
product FdhF protein
reactant fdhF_mRNA RNA
HycG + FdhF + HycF + HycD + HycE + HycB + HycC FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Name: HycG + FdhF + HycF + HycD + HycE + HycB + HycC -> FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Description: Reaction transforming HycG, FdhF, HycF, HycD, HycE, HycB, HycC into FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Type: state transition
Pathway Components: HycG + FdhF + HycF + HycD + HycE + HycB + HycC -> FdhF-HycE-HycB-HycG-HycF-HycC-HycD
Components:
Function Name Type
reactant FdhF protein
product FdhF-HycE-HycB-HycG-HycF-HycC-HycD complex
reactant HycB protein
reactant HycC protein
reactant HycD protein
reactant HycE protein
reactant HycF protein
reactant HycG protein
FdhF-HycE-HycB-HycG-HycF-HycC-HycD formate hydrogen + CO2
Name: formate -> hydrogen + CO2
Description: Reaction transforming formate into hydrogen, CO2
Type: state transition
Pathway Components: formate - FdhF-HycE-HycB-HycG-HycF-HycC-HycD -> hydrogen + CO2
Components:
Function Name Type
product CO2 simple_molecule
catalyzer FdhF-HycE-HycB-HycG-HycF-HycC-HycD complex
reactant formate simple_molecule
product hydrogen simple_molecule
FdhF oxidized hydrogenase 3 + formate reduced hydrogenase 3 + CO2
Name: oxidized hydrogenase 3 + formate -> reduced hydrogenase 3 + CO2
Description: Reaction transforming oxidized hydrogenase 3, formate into reduced hydrogenase 3, CO2
Type: state transition
Pathway Components: oxidized hydrogenase 3 + formate - FdhF -> reduced hydrogenase 3 + CO2
Components:
Function Name Type
product CO2 simple_molecule
catalyzer FdhF protein
reactant formate simple_molecule
reactant oxidized hydrogenase 3 simple_molecule
product reduced hydrogenase 3 simple_molecule
FdhF acceptors + formate A(H2) + CO2
Name: acceptors + formate -> A(H2) + CO2
Description: Reaction transforming acceptors, formate into A(H2), CO2
Type: state transition
Pathway Components: acceptors + formate - FdhF -> A(H2) + CO2
Components:
Function Name Type
product A(H2) simple_molecule
product CO2 simple_molecule
catalyzer FdhF protein
reactant acceptors simple_molecule
reactant formate simple_molecule
hyfABCDEFGHIJR-focB_mRNA HyfA
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfA
Description: Translation of HyfA
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfA
Components:
Function Name Type
product HyfA protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
Protein Monomers HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH
Name: HyfI + HyfC + HyfB + HyfA + HyfF + HyfG + HyfD + HyfE + HyfH -> HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH
Description: Reaction transforming HyfI, HyfC, HyfB, HyfA, HyfF, HyfG, HyfD, HyfE, HyfH into HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH
Type: state transition
Pathway Components: HyfI + HyfC + HyfB + HyfA + HyfF + HyfG + HyfD + HyfE + HyfH -> HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH
Components: Show/Hide Components Table
HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH electron hydrogen
Name: electron -> hydrogen
Description: Reaction transforming electron into hydrogen
Type: state transition
Pathway Components: electron - HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH -> hydrogen
Components:
Function Name Type
catalyzer HyfG-HyfI-HyfA-HyfB-HyfC-HyfD-HyfE-HyfF-HyfH complex
reactant electron simple_molecule
product hydrogen simple_molecule
hyfABCDEFGHIJR-focB_mRNA HyfB
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfB
Description: Translation of HyfB
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfB
Components:
Function Name Type
product HyfB protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfC
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfC
Description: Translation of HyfC
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfC
Components:
Function Name Type
product HyfC protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfD
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfD
Description: Translation of HyfD
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfD
Components:
Function Name Type
product HyfD protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfE
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfE
Description: Translation of HyfE
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfE
Components:
Function Name Type
product HyfE protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfF
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfF
Description: Translation of HyfF
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfF
Components:
Function Name Type
product HyfF protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfG
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfG
Description: Translation of HyfG
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfG
Components:
Function Name Type
product HyfG protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfH
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfH
Description: Translation of HyfH
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfH
Components:
Function Name Type
product HyfH protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfI
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfI
Description: Translation of HyfI
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfI
Components:
Function Name Type
product HyfI protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfJ
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfJ
Description: Translation of HyfJ
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfJ
Components:
Function Name Type
product HyfJ protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA HyfR
Name: hyfABCDEFGHIJR-focB_mRNA -> HyfR
Description: Translation of HyfR
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> HyfR
Components:
Function Name Type
product HyfR protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hyfABCDEFGHIJR-focB_mRNA FocB
Name: hyfABCDEFGHIJR-focB_mRNA -> FocB
Description: Translation of FocB
Type: translation
Pathway Components: hyfABCDEFGHIJR-focB_mRNA -> FocB
Components:
Function Name Type
product FocB protein
reactant hyfABCDEFGHIJR-focB_mRNA RNA
hypABCDE-fhlA_mRNA HypA
Name: hypABCDE-fhlA_mRNA -> HypA
Description: Translation of HypA
Type: translation
Pathway Components: hypABCDE-fhlA_mRNA -> HypA
Components:
Function Name Type
product HypA protein
reactant hypABCDE-fhlA_mRNA RNA
HypA + HypB HypA-HypB
Name: HypA + HypB -> HypA-HypB
Description: Reaction transforming HypA, HypB into HypA-HypB
Type: state transition
Pathway Components: HypA + HypB -> HypA-HypB
Components:
Function Name Type
reactant HypA protein
product HypA-HypB complex
reactant HypB protein
hypABCDE-fhlA_mRNA HypB
Name: hypABCDE-fhlA_mRNA -> HypB
Description: Translation of HypB
Type: translation
Pathway Components: hypABCDE-fhlA_mRNA -> HypB
Components:
Function Name Type
product HypB protein
reactant hypABCDE-fhlA_mRNA RNA
HypB guanosine-diphosphate guanosine-triphosphate guanosine-diphosphate + phosphate
Name: guanosine-triphosphate -> guanosine-diphosphate + phosphate
Description: Reaction transforming guanosine-triphosphate into guanosine-diphosphate, phosphate
Type: state transition
Pathway Components: guanosine-triphosphate - HypB - guanosine-diphosphate -> guanosine-diphosphate + phosphate
Components:
Function Name Type
catalyzer HypB protein
inhibitor guanosine-diphosphate simple_molecule
product guanosine-diphosphate simple_molecule
reactant guanosine-triphosphate simple_molecule
product phosphate simple_molecule
hypABCDE-fhlA_mRNA HypC
Name: hypABCDE-fhlA_mRNA -> HypC
Description: Translation of HypC
Type: translation
Pathway Components: hypABCDE-fhlA_mRNA -> HypC
Components:
Function Name Type
product HypC protein
reactant hypABCDE-fhlA_mRNA RNA
HypC + HypD HypD-HypC
Name: HypC + HypD -> HypD-HypC
Description: Reaction transforming HypC, HypD into HypD-HypC
Type: state transition
Pathway Components: HypC + HypD -> HypD-HypC
Components:
Function Name Type
reactant HypC protein
reactant HypD protein
product HypD-HypC complex
hypABCDE-fhlA_mRNA HypD
Name: hypABCDE-fhlA_mRNA -> HypD
Description: Translation of HypD
Type: translation
Pathway Components: hypABCDE-fhlA_mRNA -> HypD
Components:
Function Name Type
product HypD protein
reactant hypABCDE-fhlA_mRNA RNA
hypABCDE-fhlA_mRNA HypE
Name: hypABCDE-fhlA_mRNA -> HypE
Description: Translation of HypE
Type: translation
Pathway Components: hypABCDE-fhlA_mRNA -> HypE
Components:
Function Name Type
product HypE protein
reactant hypABCDE-fhlA_mRNA RNA
HypE HydB HypE-S-cyanate + phosphate
Name: HydB -> HypE-S-cyanate + phosphate
Description: Reaction transforming HydB into HypE-S-cyanate, phosphate
Type: state transition
Pathway Components: HydB - HypE -> HypE-S-cyanate + phosphate
Components:
Function Name Type
reactant HydB simple_molecule
catalyzer HypE protein
product HypE-S-cyanate simple_molecule
product phosphate simple_molecule
hypABCDE-fhlA_mRNA FhlA
Name: hypABCDE-fhlA_mRNA -> FhlA
Description: Translation of FhlA
Type: translation
Pathway Components: hypABCDE-fhlA_mRNA -> FhlA
Components:
Function Name Type
product FhlA protein
reactant hypABCDE-fhlA_mRNA RNA
hydN-hypF_mRNA HydN
Name: hydN-hypF_mRNA -> HydN
Description: Translation of HydN
Type: translation
Pathway Components: hydN-hypF_mRNA -> HydN
Components:
Function Name Type
product HydN protein
reactant hydN-hypF_mRNA RNA
hydN-hypF_mRNA HypF
Name: hydN-hypF_mRNA -> HypF
Description: Translation of HypF
Type: translation
Pathway Components: hydN-hypF_mRNA -> HypF
Components:
Function Name Type
product HypF protein
reactant hydN-hypF_mRNA RNA
HypF carbamoyl-P + HypE diphosphate + phosphate + HydB
Name: carbamoyl-P + HypE -> diphosphate + phosphate + HydB
Description: Reaction transforming carbamoyl-P, HypE into diphosphate, phosphate , HydB
Type: state transition
Pathway Components: carbamoyl-P + HypE - HypF -> diphosphate + phosphate + HydB
Components:
Function Name Type
product HydB simple_molecule
reactant HypE simple_molecule
catalyzer HypF protein
reactant carbamoyl-P simple_molecule
product diphosphate simple_molecule
product phosphate simple_molecule
HypF carbamoyl-P O-carbamoyladenylate + diphosphate + phosphate
Name: carbamoyl-P -> O-carbamoyladenylate + diphosphate + phosphate
Description: Reaction transforming carbamoyl-P into O-carbamoyladenylate, diphosphate , phosphate
Type: state transition
Pathway Components: carbamoyl-P - HypF -> O-carbamoyladenylate + diphosphate + phosphate
Components:
Function Name Type
catalyzer HypF protein
product O-carbamoyladenylate simple_molecule
reactant carbamoyl-P simple_molecule
product diphosphate simple_molecule
product phosphate simple_molecule
HypF O-carbamoyladenylate + HypE HydB
Name: O-carbamoyladenylate + HypE -> HydB
Description: Reaction transforming O-carbamoyladenylate, HypE into HydB
Type: state transition
Pathway Components: O-carbamoyladenylate + HypE - HypF -> HydB
Components:
Function Name Type
product HydB simple_molecule
reactant HypE simple_molecule
catalyzer HypF protein
reactant O-carbamoyladenylate simple_molecule
hypABCDE_mRNA HypA
Name: hypABCDE_mRNA -> HypA
Description: Translation of HypA
Type: translation
Pathway Components: hypABCDE_mRNA -> HypA
Components:
Function Name Type
product HypA protein
reactant hypABCDE_mRNA RNA
hypABCDE_mRNA HypB
Name: hypABCDE_mRNA -> HypB
Description: Translation of HypB
Type: translation
Pathway Components: hypABCDE_mRNA -> HypB
Components:
Function Name Type
product HypB protein
reactant hypABCDE_mRNA RNA
hypABCDE_mRNA HypC
Name: hypABCDE_mRNA -> HypC
Description: Translation of HypC
Type: translation
Pathway Components: hypABCDE_mRNA -> HypC
Components:
Function Name Type
product HypC protein
reactant hypABCDE_mRNA RNA
hypABCDE_mRNA HypD
Name: hypABCDE_mRNA -> HypD
Description: Translation of HypD
Type: translation
Pathway Components: hypABCDE_mRNA -> HypD
Components:
Function Name Type
product HypD protein
reactant hypABCDE_mRNA RNA
hypABCDE_mRNA HypE
Name: hypABCDE_mRNA -> HypE
Description: Translation of HypE
Type: translation
Pathway Components: hypABCDE_mRNA -> HypE
Components:
Function Name Type
product HypE protein
reactant hypABCDE_mRNA RNA
hycABCDEFGHI_mRNA HycA
Name: hycABCDEFGHI_mRNA -> HycA
Description: Translation of HycA
Type: translation
Pathway Components: hycABCDEFGHI_mRNA -> HycA
Components:
Function Name Type
product HycA protein
reactant hycABCDEFGHI_mRNA RNA
hycABCDEFGHI_mRNA HycB
Name: hycABCDEFGHI_mRNA -> HycB
Description: Translation of HycB
Type: translation
Pathway Components: hycABCDEFGHI_mRNA -> HycB
Components:
Function Name Type
product HycB protein
reactant hycABCDEFGHI_mRNA RNA
HycB + HycC + HycE + HycD + HycG + HycF HycD-HycC-HycF-HycG-HycB-HycE
Name: HycB + HycC + HycE + HycD + HycG + HycF -> HycD-HycC-HycF-HycG-HycB-HycE
Description: Reaction transforming HycB, HycC, HycE, HycD, HycG, HycF into HycD-HycC-HycF-HycG-HycB-HycE
Type: state transition
Pathway Components: HycB + HycC + HycE + HycD + HycG + HycF -> HycD-HycC-HycF-HycG-HycB-HycE
Components:
Function Name Type
reactant HycB protein
reactant HycC protein
reactant HycD protein
product HycD-HycC-HycF-HycG-HycB-HycE complex
reactant HycE protein
reactant HycF protein
reactant HycG protein
HycD-HycC-HycF-HycG-HycB-HycE reduced hydrogenase 3 oxidized hydrogenase 3 + hydrogen
Name: reduced hydrogenase 3 -> oxidized hydrogenase 3 + hydrogen
Description: Reaction transforming reduced hydrogenase 3 into oxidized hydrogenase 3, hydrogen
Type: state transition
Pathway Components: reduced hydrogenase 3 - HycD-HycC-HycF-HycG-HycB-HycE -> oxidized hydrogenase 3 + hydrogen
Components:
Function Name Type
catalyzer HycD-HycC-HycF-HycG-HycB-HycE complex
product hydrogen simple_molecule
product oxidized hydrogenase 3 simple_molecule
reactant reduced hydrogenase 3 simple_molecule
hycABCDEFGHI_mRNA HycC
Name: hycABCDEFGHI_mRNA -> HycC
Description: Translation of HycC
Type: translation
Pathway Components: hycABCDEFGHI_mRNA -> HycC
Components:
Function Name Type
product HycC protein
reactant hycABCDEFGHI_mRNA RNA
hycABCDEFGHI_mRNA HycD
Name: hycABCDEFGHI_mRNA -> HycD
Description: Translation of HycD
Type: translation
Pathway Components: hycABCDEFGHI_mRNA -> HycD
Components:
Function Name Type
product HycD protein
reactant hycABCDEFGHI_mRNA RNA
hycABCDEFGHI_mRNA HycE
Name: hycABCDEFGHI_mRNA -> HycE
Description: Translation of HycE
Type: translation
Pathway Components: hycABCDEFGHI_mRNA -> HycE
Components:
Function Name Type
product HycE protein
reactant hycABCDEFGHI_mRNA RNA
hycABCDEFGHI_mRNA HycF
Name: hycABCDEFGHI_mRNA -> HycF
Description: Translation of HycF
Type: translation
Pathway Components: hycABCDEFGHI_mRNA -> HycF
Components:
Function Name Type
product HycF protein
reactant hycABCDEFGHI_mRNA RNA
hycABCDEFGHI_mRNA HycG
Name: hycABCDEFGHI_mRNA -> HycG
Description: Translation of HycG
Type: translation
Pathway Components: hycABCDEFGHI_mRNA -> HycG
Components:
Function Name Type
product HycG protein
reactant hycABCDEFGHI_mRNA RNA
hycABCDEFGHI_mRNA HycH
Name: hycABCDEFGHI_mRNA -> HycH
Description: Translation of HycH
Type: translation
Pathway Components: hycABCDEFGHI_mRNA -> HycH
Components:
Function Name Type
product HycH protein
reactant hycABCDEFGHI_mRNA RNA
hycABCDEFGHI_mRNA HycI
Name: hycABCDEFGHI_mRNA -> HycI
Description: Translation of HycI
Type: translation
Pathway Components: hycABCDEFGHI_mRNA -> HycI
Components:
Function Name Type
product HycI protein
reactant hycABCDEFGHI_mRNA RNA
HycI precursor of large subunit of hydrogenase 3 Products
Name: precursor of large subunit of hydrogenase 3 -> C terminal 32 amino-acid peptide + large subunit of hydrogenase 3
Description: Reaction transforming precursor of large subunit of hydrogenase 3 into C terminal 32 amino-acid peptide, large subunit of hydrogenase 3
Type: state transition
Pathway Components: precursor of large subunit of hydrogenase 3 - HycI -> C terminal 32 amino-acid peptide + large subunit of hydrogenase 3
Components:
Function Name Type
product C terminal 32 amino-acid peptide simple_molecule
catalyzer HycI protein
product large subunit of hydrogenase 3 simple_molecule
reactant precursor of large subunit of hydrogenase 3 simple_molecule
R1 R2 R3 R4 R5 R6 R7 R8 R9 R10 R11 R12 R13 R14 R15 R16 R17 R18 R19 R20 R21 R22 R23 R24 R25 R26 R27 R28 R29 R30 R31 R32 R33 R34 R35 R36 R37 R38 R39 R40 R41 R42 R43 R44 R45 R46 R47 R48 R49 R50 R51 R52 R53 R54 R55 R56 R57 R58



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