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FadR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
(3E,5Z)-tetradecadienoate (3E,5Z)-tetradecadienoate_Ext 2-trans,5-cis-tetradecadienoyl-CoA 3,5-tetradecadienoyl-CoA 3-hydroxy-5-cis-tetradecenoyl-CoA acyl-CoA CO2 FabA FabD FabG FabH FadA FadB FadD FadE FadH FadI FadJ FadL FadM FadR IclR KASI This Gensor Unit is not yet available UspA a 3-OH-acyl-CoA beta-OH-acyl-ACP 3-OH-acyl-CoA a (R)-3-hydroxy-cis-vaccenoyl-[acp] a (R)-3-hydroxybutanoyl-[acp] a (R)-3-hydroxydodecanoyl-[acp] a (R)-3-hydroxyoctanoyl-[acp] a 2,3,4-saturated fatty acid fatty acyln-CoA a 2,3,4-saturated fatty acyl-[acp] a 3-oxo-cis-Delta;5-dodecenoyl-[acp] a 3-oxo-cis-Delta;7-tetradecenoyl-[acp] a 3-oxo-cis-Delta;9-hexadecenoyl-[acp] a 3-oxo-cis-vaccenoyl-[acp] a 3-oxo-decanoyl-[acp] a 3-oxo-dodecanoyl-[acp] a 3-oxo-glutaryl-[acp] methyl ester a 3-oxo-hexanoyl-[acp] a 3-oxo-myristoyl-[acp] a 3-oxo-octanoyl-[acp] a 3-oxo-palmitoyl-[acp] a 3-ketopimelyl-[acp] methyl ester RCOCH2CO-CoA acetoacyl-ACP a 3R-hydroxy cis Delta;5-dodecenoyl-[acp] a 3R-hydroxy cis Delta;7-tetradecenoyl-[acp] a 3R-hydroxy cis Delta;9-hexadecenoyl-[acp] a 3R-hydroxyglutaryl-[acp] methyl ester a 3R-hydroxypimelyl-[acp] methyl ester butanoyl-[acp] a cis-Delta;3-decenoyl-[acp] a cis-Delta;5-dodecenoyl-[acp] a cis-Delta;7-tetradecenoyl-[acp] a cis-3-enoyl-CoA a cis-vaccen-2-enoyl-[acp] a crotonyl-[acp] a decanoyl-[acp] a lauryl-[acp] a glutaryl-[acp] methyl ester a hexanoyl-[acp] acyl carrier protein LCFA LCFA_Ext malonyl-[ACP] a myristoyl-[acp] a reduced ETF a trans dodec-2-enoyl-[acp] a trans hex-2-enoyl-[acp] a trans hexadecenoyl-[acp] a trans oct-2-enoyl-[acp] a trans tetradec-2-enoyl-[acp] a trans-Delta;2-decenoyl-[acp] a trans-Delta;3-cis-Delta;5-dodecenoyl-[acp] trans-2,3-dehydroacyl-CoA CH3(CH2)xCH=CHCO-S-ACP ac-CoA an (3R)-3-hydroxymyristoyl-[acp] an (R)-3-hydroxydecanoyl-[acp] an (R)-3-hydroxyhexanoyl-[acp] an (R)-3-hydroxypalmitoyl-[acp] an acetoacetyl-[acp] an acetyl-[acp] an octanoyl-[acp] an oxidized ETF CoA PP fabA fabA_mRNA fabB fabB_mRNA fabHDG fabHDG_mRNA fadBA fadBA_mRNA fadD-sroD fadD-sroD_mRNA fadE fadE_mRNA fadH fadH_mRNA fadIJ fadIJ_mRNA fadL fadL_mRNA fadM fadM_mRNA fadR fadR_mRNA iclR iclR_mRNA malonyl-CoA trans-Delta;2, cis-Delta;4-decadienoyl-CoA trans-Delta;2-decenoyl-CoA uspA uspA_mRNA FadR acyl-CoA CO2 CO2 CO2 CO2 CO2 CO2 CO2 CO2 CO2 CO2 CO2 CO2 CO2 malonyl-[ACP] malonyl-[ACP] malonyl-[ACP] malonyl-[ACP] malonyl-[ACP] malonyl-[ACP] malonyl-[ACP] malonyl-[ACP] malonyl-[ACP] malonyl-[ACP] acyl carrier protein acyl carrier protein acyl carrier protein acyl carrier protein acyl carrier protein acyl carrier protein acyl carrier protein acyl carrier protein acyl carrier protein acyl carrier protein acyl carrier protein acyl carrier protein CoA CoA CoA CoA CoA ac-CoA ac-CoA malonyl-[ACP] a (R)-3-hydroxydodecanoyl-[acp] malonyl-[ACP] a 3R-hydroxy cis Delta;9-hexadecenoyl-[acp]


Gensor Unit       
Name: FadR
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0045723 - positive regulation of fatty acid biosynthetic process
GO:0033818 - beta-ketoacyl-acyl-carrier-protein synthase III activity
GO:0019217 - regulation of fatty acid metabolic process
GO:0010181 - FMN binding
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity
GO:0003995 - acyl-CoA dehydrogenase activity
GO:0050662 - coenzyme binding
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0045892 - negative regulation of transcription, DNA-templated
GO:0016491 - oxidoreductase activity
GO:0016020 - membrane
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Components:
Function Name Type
RNA uspA_mRNA RNA


Reactions       
Showing 85 reactions
fabA fabA_mRNA
Name: fabA -> fabA_mRNA
Description: Transcription of transcription unit fabA; reaction inhibition by FabR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product fabA_mRNA RNA nd nd
reactant fabA gene nd nd
fabB fabB_mRNA
Name: fabB -> fabB_mRNA
Description: Transcription of transcription unit fabB; reaction inhibition by FabR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant fabB gene nd nd
product fabB_mRNA RNA nd nd
fabHDG fabHDG_mRNA
Name: fabHDG -> fabHDG_mRNA
Description: Transcription of transcription unit fabHDG; reaction activation by FadR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product fabHDG_mRNA RNA nd nd
reactant fabHDG gene nd nd
fadBA fadBA_mRNA
Name: fadBA -> fadBA_mRNA
Description: Transcription of transcription unit fadBA; reaction inhibition by FadR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product fadBA_mRNA RNA nd nd
reactant fadBA gene nd nd
fadD-sroD fadD-sroD_mRNA
Name: fadD-sroD -> fadD-sroD_mRNA
Description: Transcription of transcription unit fadD-sroD; reaction inhibition by FadR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant fadD-sroD gene nd nd
product fadD-sroD_mRNA RNA nd nd
fadE fadE_mRNA
Name: fadE -> fadE_mRNA
Description: Transcription of transcription unit fadE; reaction inhibition by FadR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant fadE gene nd nd
product fadE_mRNA RNA nd nd
fadH fadH_mRNA
Name: fadH -> fadH_mRNA
Description: Transcription of transcription unit fadH; reaction inhibition by FadR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product fadH_mRNA RNA nd nd
reactant fadH gene nd nd
fadIJ fadIJ_mRNA
Name: fadIJ -> fadIJ_mRNA
Description: Transcription of transcription unit fadIJ; reaction inhibition by FadR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product fadIJ_mRNA RNA nd nd
reactant fadIJ gene nd nd
fadL fadL_mRNA
Name: fadL -> fadL_mRNA
Description: Transcription of transcription unit fadL; reaction inhibition by FadR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product fadL_mRNA RNA nd nd
reactant fadL gene nd nd
fadM fadM_mRNA
Name: fadM -> fadM_mRNA
Description: Transcription of transcription unit fadM; reaction inhibition by FadR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product fadM_mRNA RNA nd nd
reactant fadM gene nd nd
iclR iclR_mRNA
Name: iclR -> iclR_mRNA
Description: Transcription of transcription unit iclR; reaction activation by FadR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant iclR gene nd nd
product iclR_mRNA RNA nd nd
uspA uspA_mRNA
Name: uspA -> uspA_mRNA
Description: Transcription of transcription unit uspA; reaction inhibition by FadR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant uspA gene nd nd
product uspA_mRNA RNA nd nd
FadR + acyl-CoA FadR-acyl-CoA
Name: FadR + acyl-CoA -> FadR-acyl-CoA
Description: Reaction transforming FadR, acyl-CoA into FadR-acyl-CoA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product FadR-acyl-CoA complex nd nd
reactant FadR protein nd nd
reactant acyl-CoA simple molecule nd nd
fadR fadR_mRNA
Name: fadR -> fadR_mRNA
Description: Transcription of transcription unit fadR; reaction activation by FadR-acyl-CoA.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product fadR_mRNA RNA nd nd
reactant fadR gene nd nd
fabA_mRNA FabA
Name: fabA_mRNA -> FabA
Description: Translation of FabA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant fabA_mRNA RNA nd nd
product FabA protein nd nd
beta-OH-acyl-ACP CH3(CH2)xCH=CHCO-S-ACP
Name: beta-OH-acyl-ACP -> CH3(CH2)xCH=CHCO-S-ACP
Description: Reaction transforming beta-OH-acyl-ACP into CH3(CH2)xCH=CHCO-S-ACP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant beta-OH-acyl-ACP simple molecule nd nd
product CH3(CH2)xCH=CHCO-S-ACP simple molecule nd nd
an (3R)-3-hydroxymyristoyl-[acp] a trans tetradec-2-enoyl-[acp]
Name: an (3R)-3-hydroxymyristoyl-[acp] -> a trans tetradec-2-enoyl-[acp]
Description: Reaction transforming an (3R)-3-hydroxymyristoyl-[acp] into a trans tetradec-2-enoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product a trans tetradec-2-enoyl-[acp] simple molecule nd nd
reactant an (3R)-3-hydroxymyristoyl-[acp] simple molecule nd nd
a (R)-3-hydroxydodecanoyl-[acp] a trans dodec-2-enoyl-[acp]
Name: a (R)-3-hydroxydodecanoyl-[acp] -> a trans dodec-2-enoyl-[acp]
Description: Reaction transforming a (R)-3-hydroxydodecanoyl-[acp] into a trans dodec-2-enoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a (R)-3-hydroxydodecanoyl-[acp] simple molecule nd nd
product a trans dodec-2-enoyl-[acp] simple molecule nd nd
an (R)-3-hydroxyhexanoyl-[acp] a trans hex-2-enoyl-[acp]
Name: an (R)-3-hydroxyhexanoyl-[acp] -> a trans hex-2-enoyl-[acp]
Description: Reaction transforming an (R)-3-hydroxyhexanoyl-[acp] into a trans hex-2-enoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant an (R)-3-hydroxyhexanoyl-[acp] simple molecule nd nd
product a trans hex-2-enoyl-[acp] simple molecule nd nd
a (R)-3-hydroxyoctanoyl-[acp] a trans oct-2-enoyl-[acp]
Name: a (R)-3-hydroxyoctanoyl-[acp] -> a trans oct-2-enoyl-[acp]
Description: Reaction transforming a (R)-3-hydroxyoctanoyl-[acp] into a trans oct-2-enoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a (R)-3-hydroxyoctanoyl-[acp] simple molecule nd nd
product a trans oct-2-enoyl-[acp] simple molecule nd nd
a (R)-3-hydroxy-cis-vaccenoyl-[acp] a cis-vaccen-2-enoyl-[acp]
Name: a (R)-3-hydroxy-cis-vaccenoyl-[acp] -> a cis-vaccen-2-enoyl-[acp]
Description: Reaction transforming a (R)-3-hydroxy-cis-vaccenoyl-[acp] into a cis-vaccen-2-enoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a (R)-3-hydroxy-cis-vaccenoyl-[acp] simple molecule nd nd
product a cis-vaccen-2-enoyl-[acp] simple molecule nd nd
an (R)-3-hydroxypalmitoyl-[acp] a trans hexadecenoyl-[acp]
Name: an (R)-3-hydroxypalmitoyl-[acp] -> a trans hexadecenoyl-[acp]
Description: Reaction transforming an (R)-3-hydroxypalmitoyl-[acp] into a trans hexadecenoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant an (R)-3-hydroxypalmitoyl-[acp] simple molecule nd nd
product a trans hexadecenoyl-[acp] simple molecule nd nd
a (R)-3-hydroxybutanoyl-[acp] a crotonyl-[acp]
Name: a (R)-3-hydroxybutanoyl-[acp] -> a crotonyl-[acp]
Description: Reaction transforming a (R)-3-hydroxybutanoyl-[acp] into a crotonyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a (R)-3-hydroxybutanoyl-[acp] simple molecule nd nd
product a crotonyl-[acp] simple molecule nd nd
fabHDG_mRNA FabH
Name: fabHDG_mRNA -> FabH
Description: Translation of FabH
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FabH protein nd nd
reactant fabHDG_mRNA RNA nd nd
ac-CoA + malonyl-[ACP] an acetoacetyl-[acp] + CoA + CO2
Name: ac-CoA + malonyl-[ACP] -> an acetoacetyl-[acp] + CoA + CO2
Description: Reaction transforming ac-CoA, malonyl-[ACP] into an acetoacetyl-[acp], CoA , CO2
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant ac-CoA simple molecule nd nd
reactant malonyl-[ACP] simple molecule nd nd
product CoA simple molecule nd nd
product CO2 simple molecule nd nd
product an acetoacetyl-[acp] simple molecule nd nd
ACP + ac-CoA an acetyl-[acp] + CoA
Name: ACP + ac-CoA -> an acetyl-[acp] + CoA
Description: Reaction transforming ACP, ac-CoA into an acetyl-[acp], CoA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant ACP simple molecule nd nd
product an acetyl-[acp] simple molecule nd nd
reactant ac-CoA simple molecule nd nd
product CoA simple molecule nd nd
fadD-sroD_mRNA FadD
Name: fadD-sroD_mRNA -> FadD
Description: Translation of FadD
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FadD protein nd nd
reactant fadD-sroD_mRNA RNA nd nd
a 2,3,4-saturated fatty acid + CoA fatty acyln-CoA + PP
Name: a 2,3,4-saturated fatty acid + CoA -> fatty acyln-CoA + PP
Description: Reaction transforming a 2,3,4-saturated fatty acid, CoA into fatty acyln-CoA, PP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant CoA simple molecule nd nd
reactant a 2,3,4-saturated fatty acid simple molecule nd nd
product PP simple molecule nd nd
product fatty acyln-CoA simple molecule nd nd
fabHDG_mRNA FabD
Name: fabHDG_mRNA -> FabD
Description: Translation of FabD
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FabD protein nd nd
reactant fabHDG_mRNA RNA nd nd
ACP + malonyl-CoA malonyl-[ACP] + CoA
Name: ACP + malonyl-CoA -> malonyl-[ACP] + CoA
Description: Reaction transforming ACP, malonyl-CoA into malonyl-[ACP], CoA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant malonyl-CoA simple molecule nd nd
reactant ACP simple molecule nd nd
product CoA simple molecule nd nd
product malonyl-[ACP] simple molecule nd nd
iclR_mRNA IclR
Name: iclR_mRNA -> IclR
Description: Translation of IclR
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant iclR_mRNA RNA nd nd
product IclR protein nd nd
fadE_mRNA FadE
Name: fadE_mRNA -> FadE
Description: Translation of FadE
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FadE protein nd nd
reactant fadE_mRNA RNA nd nd
fatty acyln-CoA + an oxidized ETF trans-2,3-dehydroacyl-CoA + a reduced ETF
Name: fatty acyln-CoA + an oxidized ETF -> trans-2,3-dehydroacyl-CoA + a reduced ETF
Description: Reaction transforming fatty acyln-CoA, an oxidized ETF into trans-2,3-dehydroacyl-CoA, a reduced ETF
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product trans-2,3-dehydroacyl-CoA simple molecule nd nd
product a reduced ETF simple molecule nd nd
reactant an oxidized ETF simple molecule nd nd
reactant fatty acyln-CoA simple molecule nd nd
fadIJ_mRNA FadJ
Name: fadIJ_mRNA -> FadJ
Description: Translation of FadJ
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant fadIJ_mRNA RNA nd nd
product FadJ protein nd nd
3-OH-acyl-CoA trans-2,3-dehydroacyl-CoA
Name: 3-OH-acyl-CoA -> trans-2,3-dehydroacyl-CoA
Description: Reaction transforming 3-OH-acyl-CoA into trans-2,3-dehydroacyl-CoA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product trans-2,3-dehydroacyl-CoA simple molecule nd nd
reactant 3-OH-acyl-CoA simple molecule nd nd
a 3-OH-acyl-CoA 3-OH-acyl-CoA
Name: a 3-OH-acyl-CoA -> 3-OH-acyl-CoA
Description: Reaction transforming a 3-OH-acyl-CoA into 3-OH-acyl-CoA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product 3-OH-acyl-CoA simple molecule nd nd
reactant a 3-OH-acyl-CoA simple molecule nd nd
a cis-3-enoyl-CoA trans-2,3-dehydroacyl-CoA
Name: a cis-3-enoyl-CoA -> trans-2,3-dehydroacyl-CoA
Description: Reaction transforming a cis-3-enoyl-CoA into trans-2,3-dehydroacyl-CoA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product trans-2,3-dehydroacyl-CoA simple molecule nd nd
reactant a cis-3-enoyl-CoA simple molecule nd nd
3-OH-acyl-CoA RCOCH2CO-CoA
Name: 3-OH-acyl-CoA -> RCOCH2CO-CoA
Description: Reaction transforming 3-OH-acyl-CoA into RCOCH2CO-CoA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product RCOCH2CO-CoA simple molecule nd nd
reactant 3-OH-acyl-CoA simple molecule nd nd
fadM_mRNA FadM
Name: fadM_mRNA -> FadM
Description: Translation of FadM
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FadM protein nd nd
reactant fadM_mRNA RNA nd nd
3,5-tetradecadienoyl-CoA (3E,5Z)-tetradecadienoate + CoA
Name: 3,5-tetradecadienoyl-CoA -> (3E,5Z)-tetradecadienoate + CoA
Description: Reaction transforming 3,5-tetradecadienoyl-CoA into (3E,5Z)-tetradecadienoate, CoA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product (3E,5Z)-tetradecadienoate simple molecule nd nd
reactant 3,5-tetradecadienoyl-CoA simple molecule nd nd
product CoA simple molecule nd nd
uspA_mRNA UspA
Name: uspA_mRNA -> UspA
Description: Translation of UspA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant uspA_mRNA RNA nd nd
product UspA protein nd nd
fabHDG_mRNA FabG
Name: fabHDG_mRNA -> FabG
Description: Translation of FabG
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FabG protein nd nd
reactant fabHDG_mRNA RNA nd nd
an acetoacetyl-[acp] a (R)-3-hydroxybutanoyl-[acp]
Name: an acetoacetyl-[acp] -> a (R)-3-hydroxybutanoyl-[acp]
Description: Reaction transforming an acetoacetyl-[acp] into a (R)-3-hydroxybutanoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant an acetoacetyl-[acp] simple molecule nd nd
product a (R)-3-hydroxybutanoyl-[acp] simple molecule nd nd
beta-OH-acyl-ACP acetoacyl-ACP
Name: beta-OH-acyl-ACP -> acetoacyl-ACP
Description: Reaction transforming beta-OH-acyl-ACP into acetoacyl-ACP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant beta-OH-acyl-ACP simple molecule nd nd
product acetoacyl-ACP simple molecule nd nd
an (3R)-3-hydroxymyristoyl-[acp] a 3-oxo-myristoyl-[acp]
Name: an (3R)-3-hydroxymyristoyl-[acp] -> a 3-oxo-myristoyl-[acp]
Description: Reaction transforming an (3R)-3-hydroxymyristoyl-[acp] into a 3-oxo-myristoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product a 3-oxo-myristoyl-[acp] simple molecule nd nd
reactant an (3R)-3-hydroxymyristoyl-[acp] simple molecule nd nd
a 3R-hydroxyglutaryl-[acp] methyl ester a 3-oxo-glutaryl-[acp] methyl ester
Name: a 3R-hydroxyglutaryl-[acp] methyl ester -> a 3-oxo-glutaryl-[acp] methyl ester
Description: Reaction transforming a 3R-hydroxyglutaryl-[acp] methyl ester into a 3-oxo-glutaryl-[acp] methyl ester
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a 3R-hydroxyglutaryl-[acp] methyl ester simple molecule nd nd
product a 3-oxo-glutaryl-[acp] methyl ester simple molecule nd nd
a (R)-3-hydroxydodecanoyl-[acp] a 3-oxo-dodecanoyl-[acp]
Name: a (R)-3-hydroxydodecanoyl-[acp] -> a 3-oxo-dodecanoyl-[acp]
Description: Reaction transforming a (R)-3-hydroxydodecanoyl-[acp] into a 3-oxo-dodecanoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a (R)-3-hydroxydodecanoyl-[acp] simple molecule nd nd
product a 3-oxo-dodecanoyl-[acp] simple molecule nd nd
an (R)-3-hydroxyhexanoyl-[acp] a 3-oxo-hexanoyl-[acp]
Name: an (R)-3-hydroxyhexanoyl-[acp] -> a 3-oxo-hexanoyl-[acp]
Description: Reaction transforming an (R)-3-hydroxyhexanoyl-[acp] into a 3-oxo-hexanoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product a 3-oxo-hexanoyl-[acp] simple molecule nd nd
reactant an (R)-3-hydroxyhexanoyl-[acp] simple molecule nd nd
a (R)-3-hydroxyoctanoyl-[acp] a 3-oxo-octanoyl-[acp]
Name: a (R)-3-hydroxyoctanoyl-[acp] -> a 3-oxo-octanoyl-[acp]
Description: Reaction transforming a (R)-3-hydroxyoctanoyl-[acp] into a 3-oxo-octanoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a (R)-3-hydroxyoctanoyl-[acp] simple molecule nd nd
product a 3-oxo-octanoyl-[acp] simple molecule nd nd
a (R)-3-hydroxy-cis-vaccenoyl-[acp] a 3-oxo-cis-vaccenoyl-[acp]
Name: a (R)-3-hydroxy-cis-vaccenoyl-[acp] -> a 3-oxo-cis-vaccenoyl-[acp]
Description: Reaction transforming a (R)-3-hydroxy-cis-vaccenoyl-[acp] into a 3-oxo-cis-vaccenoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a (R)-3-hydroxy-cis-vaccenoyl-[acp] simple molecule nd nd
product a 3-oxo-cis-vaccenoyl-[acp] simple molecule nd nd
an (R)-3-hydroxypalmitoyl-[acp] a 3-oxo-palmitoyl-[acp]
Name: an (R)-3-hydroxypalmitoyl-[acp] -> a 3-oxo-palmitoyl-[acp]
Description: Reaction transforming an (R)-3-hydroxypalmitoyl-[acp] into a 3-oxo-palmitoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product a 3-oxo-palmitoyl-[acp] simple molecule nd nd
reactant an (R)-3-hydroxypalmitoyl-[acp] simple molecule nd nd
an (R)-3-hydroxydecanoyl-[acp] a 3-oxo-decanoyl-[acp]
Name: an (R)-3-hydroxydecanoyl-[acp] -> a 3-oxo-decanoyl-[acp]
Description: Reaction transforming an (R)-3-hydroxydecanoyl-[acp] into a 3-oxo-decanoyl-[acp]
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product a 3-oxo-decanoyl-[acp] simple molecule nd nd
reactant an (R)-3-hydroxydecanoyl-[acp] simple molecule nd nd
a 3R-hydroxypimelyl-[acp] methyl ester a 3-ketopimelyl-[acp] methyl ester
Name: a 3R-hydroxypimelyl-[acp] methyl ester -> a 3-ketopimelyl-[acp] methyl ester
Description: Reaction transforming a 3R-hydroxypimelyl-[acp] methyl ester into a 3-ketopimelyl-[acp] methyl ester
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a 3R-hydroxypimelyl-[acp] methyl ester simple molecule nd nd
product a 3-ketopimelyl-[acp] methyl ester simple molecule nd nd
fadR_mRNA FadR
Name: fadR_mRNA -> FadR
Description: Translation of FadR
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant fadR_mRNA RNA nd nd
product FadR protein nd nd
fabB_mRNA KASI
Name: fabB_mRNA -> KASI
Description: Translation of KASI
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant fabB_mRNA RNA nd nd
product KASI protein nd nd
a glutaryl-[acp] methyl ester + malonyl-[ACP] a 3-ketopimelyl-[acp] methyl ester + CO2 + ACP
Name: a glutaryl-[acp] methyl ester + malonyl-[ACP] -> a 3-ketopimelyl-[acp] methyl ester + CO2 + ACP
Description: Reaction transforming a glutaryl-[acp] methyl ester, malonyl-[ACP] into a 3-ketopimelyl-[acp] methyl ester, CO2 , ACP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a glutaryl-[acp] methyl ester simple molecule nd nd
reactant malonyl-[ACP] simple molecule nd nd
product CO2 simple molecule nd nd
product ACP simple molecule nd nd
product a 3-ketopimelyl-[acp] methyl ester simple molecule nd nd
butanoyl-[acp] + malonyl-[ACP] a 3-oxo-hexanoyl-[acp] + CO2 + ACP
Name: butanoyl-[acp] + malonyl-[ACP] -> a 3-oxo-hexanoyl-[acp] + CO2 + ACP
Description: Reaction transforming butanoyl-[acp], malonyl-[ACP] into a 3-oxo-hexanoyl-[acp], CO2 , ACP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant butanoyl-[acp] simple molecule nd nd
product ACP simple molecule nd nd
reactant malonyl-[ACP] simple molecule nd nd
product CO2 simple molecule nd nd
product a 3-oxo-hexanoyl-[acp] simple molecule nd nd
malonyl-[ACP] + an acetyl-[acp] ACP + an acetoacetyl-[acp] + CO2
Name: malonyl-[ACP] + an acetyl-[acp] -> ACP + an acetoacetyl-[acp] + CO2
Description: Reaction transforming malonyl-[ACP], an acetyl-[acp] into ACP, an acetoacetyl-[acp] , CO2
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant an acetyl-[acp] simple molecule nd nd
product an acetoacetyl-[acp] simple molecule nd nd
reactant malonyl-[ACP] simple molecule nd nd
product CO2 simple molecule nd nd
product ACP simple molecule nd nd
malonyl-[ACP] + a 2,3,4-saturated fatty acyl-[acp] ACP + acetoacyl-ACP + CO2
Name: malonyl-[ACP] + a 2,3,4-saturated fatty acyl-[acp] -> ACP + acetoacyl-ACP + CO2
Description: Reaction transforming malonyl-[ACP], a 2,3,4-saturated fatty acyl-[acp] into ACP, acetoacyl-ACP , CO2
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product CO2 simple molecule nd nd
reactant a 2,3,4-saturated fatty acyl-[acp] simple molecule nd nd
product ACP simple molecule nd nd
product acetoacyl-ACP simple molecule nd nd
reactant malonyl-[ACP] simple molecule nd nd
a myristoyl-[acp] + malonyl-[ACP] a 3-oxo-palmitoyl-[acp] + CO2 + ACP
Name: a myristoyl-[acp] + malonyl-[ACP] -> a 3-oxo-palmitoyl-[acp] + CO2 + ACP
Description: Reaction transforming a myristoyl-[acp], malonyl-[ACP] into a 3-oxo-palmitoyl-[acp], CO2 , ACP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product a 3-oxo-palmitoyl-[acp] simple molecule nd nd
product CO2 simple molecule nd nd
product ACP simple molecule nd nd
reactant a myristoyl-[acp] simple molecule nd nd
reactant malonyl-[ACP] simple molecule nd nd
a hexanoyl-[acp] + malonyl-[ACP] a 3-oxo-octanoyl-[acp] + CO2 + ACP
Name: a hexanoyl-[acp] + malonyl-[ACP] -> a 3-oxo-octanoyl-[acp] + CO2 + ACP
Description: Reaction transforming a hexanoyl-[acp], malonyl-[ACP] into a 3-oxo-octanoyl-[acp], CO2 , ACP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a hexanoyl-[acp] simple molecule nd nd
reactant malonyl-[ACP] simple molecule nd nd
product ACP simple molecule nd nd
product a 3-oxo-octanoyl-[acp] simple molecule nd nd
product CO2 simple molecule nd nd
an octanoyl-[acp] + malonyl-[ACP] a 3-oxo-decanoyl-[acp] + CO2 + ACP
Name: an octanoyl-[acp] + malonyl-[ACP] -> a 3-oxo-decanoyl-[acp] + CO2 + ACP
Description: Reaction transforming an octanoyl-[acp], malonyl-[ACP] into a 3-oxo-decanoyl-[acp], CO2 , ACP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant malonyl-[ACP] simple molecule nd nd
reactant an octanoyl-[acp] simple molecule nd nd
product ACP simple molecule nd nd
product CO2 simple molecule nd nd
product a 3-oxo-decanoyl-[acp] simple molecule nd nd
a decanoyl-[acp] + malonyl-[ACP] a 3-oxo-dodecanoyl-[acp] + CO2 + ACP
Name: a decanoyl-[acp] + malonyl-[ACP] -> a 3-oxo-dodecanoyl-[acp] + CO2 + ACP
Description: Reaction transforming a decanoyl-[acp], malonyl-[ACP] into a 3-oxo-dodecanoyl-[acp], CO2 , ACP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a decanoyl-[acp] simple molecule nd nd
product CO2 simple molecule nd nd
reactant malonyl-[ACP] simple molecule nd nd
product a 3-oxo-dodecanoyl-[acp] simple molecule nd nd
product ACP simple molecule nd nd
a lauryl-[acp] + malonyl-[ACP] a 3-oxo-myristoyl-[acp] + CO2 + ACP
Name: a lauryl-[acp] + malonyl-[ACP] -> a 3-oxo-myristoyl-[acp] + CO2 + ACP
Description: Reaction transforming a lauryl-[acp], malonyl-[ACP] into a 3-oxo-myristoyl-[acp], CO2 , ACP
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant malonyl-[ACP] simple molecule nd nd
product ACP simple molecule nd nd
reactant a lauryl-[acp] simple molecule nd nd
product CO2 simple molecule nd nd
product a 3-oxo-myristoyl-[acp] simple molecule nd nd
malonyl-[ACP] an acetyl-[acp] + CO2
Name: malonyl-[ACP] -> an acetyl-[acp] + CO2
Description: Reaction transforming malonyl-[ACP] into an acetyl-[acp], CO2
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product an acetyl-[acp] simple molecule nd nd
product CO2 simple molecule nd nd
reactant malonyl-[ACP] simple molecule nd nd
fadH_mRNA FadH
Name: fadH_mRNA -> FadH
Description: Translation of FadH
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FadH protein nd nd
reactant fadH_mRNA RNA nd nd
fadIJ_mRNA FadI
Name: fadIJ_mRNA -> FadI
Description: Translation of FadI
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant fadIJ_mRNA RNA nd nd
product FadI protein nd nd
fatty acyln-CoA + ac-CoA RCOCH2CO-CoA + CoA
Name: fatty acyln-CoA + ac-CoA -> RCOCH2CO-CoA + CoA
Description: Reaction transforming fatty acyln-CoA, ac-CoA into RCOCH2CO-CoA, CoA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant fatty acyln-CoA simple molecule nd nd
reactant ac-CoA simple molecule nd nd
product CoA simple molecule nd nd
product RCOCH2CO-CoA simple molecule nd nd
fadBA_mRNA FadB
Name: fadBA_mRNA -> FadB
Description: Translation of FadB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant fadBA_mRNA RNA nd nd
product FadB protein nd nd
2-trans,5-cis-tetradecadienoyl-CoA 3-hydroxy-5-cis-tetradecenoyl-CoA
Name: 2-trans,5-cis-tetradecadienoyl-CoA -> 3-hydroxy-5-cis-tetradecenoyl-CoA
Description: Reaction transforming 2-trans,5-cis-tetradecadienoyl-CoA into 3-hydroxy-5-cis-tetradecenoyl-CoA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product 3-hydroxy-5-cis-tetradecenoyl-CoA simple molecule nd nd
reactant 2-trans,5-cis-tetradecadienoyl-CoA simple molecule nd nd
2-trans,5-cis-tetradecadienoyl-CoA 3,5-tetradecadienoyl-CoA
Name: 2-trans,5-cis-tetradecadienoyl-CoA -> 3,5-tetradecadienoyl-CoA
Description: Reaction transforming 2-trans,5-cis-tetradecadienoyl-CoA into 3,5-tetradecadienoyl-CoA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant 2-trans,5-cis-tetradecadienoyl-CoA simple molecule nd nd
product 3,5-tetradecadienoyl-CoA simple molecule nd nd
fadL_mRNA FadL
Name: fadL_mRNA -> FadL
Description: Translation of FadL
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FadL protein nd nd
reactant fadL_mRNA RNA nd nd
LCFA_Ext LCFA
Name: LCFA_Ext -> LCFA
Description: Transport of LCFA_Ext through a bacterial membrane, leading to the presence of LCFA inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant LCFA_Ext simple molecule nd nd
product LCFA simple molecule nd nd
(3E,5Z)-tetradecadienoate_Ext (3E,5Z)-tetradecadienoate
Name: (3E,5Z)-tetradecadienoate_Ext -> (3E,5Z)-tetradecadienoate
Description: Transport of (3E,5Z)-tetradecadienoate_Ext through a bacterial membrane, leading to the presence of (3E,5Z)-tetradecadienoate inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product (3E,5Z)-tetradecadienoate simple molecule nd nd
reactant (3E,5Z)-tetradecadienoate_Ext simple molecule nd nd
fadD-sroD_mRNA SroD small RNA
Name: fadD-sroD_mRNA -> SroD small RNA
Description: Translation of SroD small RNA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant fadD-sroD_mRNA RNA nd nd
product SroD small RNA RNA nd nd
fadBA_mRNA FadA
Name: fadBA_mRNA -> FadA
Description: Translation of FadA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant fadBA_mRNA RNA nd nd
product FadA protein nd nd
CH3(CH2)xCH=CHCO-S-ACP a 2,3,4-saturated fatty acyl-[acp]
Name: CH3(CH2)xCH=CHCO-S-ACP -> a 2,3,4-saturated fatty acyl-[acp]
Description: Transformation of CH3(CH2)xCH=CHCO-S-ACP into a 2,3,4-saturated fatty acyl-[acp] by one, or two/three reactions not shown.
Type: super-reaction
Components:
Function Name Type Evidence Reference(s)
product a 2,3,4-saturated fatty acyl-[acp] simple molecule nd nd