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EnvY Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
EnvY OmpC OmpF glycine betaine glycine betaine_Ext hydrophilic solute or ion hydrophilic solute or ion_Ext ompC ompC_mRNA ompF ompF_mRNA


Gensor Unit       
Name: EnvY
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0043213 - bacteriocin transport
GO:0006974 - cellular response to DNA damage stimulus
GO:0006855 - drug transmembrane transport
GO:0034220 - ion transmembrane transport
GO:0015914 - phospholipid transport
GO:0055085 - transmembrane transport
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cellular_component GO:0009279 - cell outer membrane
GO:0045203 - integral component of cell outer membrane
GO:0016020 - membrane
GO:0046930 - pore complex
molecular_function GO:0042912 - colicin transmembrane transporter activity
GO:0015238 - drug transmembrane transporter activity
GO:0015075 - ion transmembrane transporter activity
GO:0015288 - porin activity
GO:0005515 - protein binding
Components: Show/Hide Components Table (41 more...)
Function Name Type
simple_molecule 5-methylthioribose simple_molecule
simple_molecule 5-methylthioribose_Ext simple_molecule
simple_molecule C4-dicarboxylate simple_molecule
simple_molecule C4-dicarboxylate_Ext simple_molecule
simple_molecule CO2 simple_molecule
simple_molecule CO2_Ext simple_molecule
protein EnvY protein
simple_molecule N-acetylneuraminate simple_molecule
simple_molecule N-acetylneuraminate_Ext simple_molecule
protein OmpC protein
protein OmpF protein
protein TolB protein
complex TolB-OmpF complex
simple_molecule amino acid simple_molecule
simple_molecule amino acid_Ext simple_molecule
simple_molecule base(2) simple_molecule
simple_molecule base(2)_Ext simple_molecule
simple_molecule beta-Neu5Ac simple_molecule
simple_molecule beta-Neu5Ac_Ext simple_molecule
simple_molecule betaine simple_molecule
simple_molecule betaine_Ext simple_molecule
simple_molecule hydrophilic solute or ion 600 Da simple_molecule
simple_molecule hydrophilic solute or ion 600 Da_Ext simple_molecule
simple_molecule inositol simple_molecule
simple_molecule inositol_Ext simple_molecule
simple_molecule ion simple_molecule
simple_molecule ion_Ext simple_molecule
simple_molecule monosaccharide simple_molecule
simple_molecule monosaccharide_Ext simple_molecule
gene ompC gene
RNA ompC_mRNA RNA
gene ompF gene
RNA ompF_mRNA RNA
simple_molecule organosulfur compound simple_molecule
simple_molecule organosulfur compound_Ext simple_molecule
simple_molecule polyol simple_molecule
simple_molecule polyol_Ext simple_molecule
simple_molecule short-chain acid anion simple_molecule
simple_molecule short-chain acid anion_Ext simple_molecule
simple_molecule short-chain alcohol simple_molecule
simple_molecule short-chain alcohol_Ext simple_molecule


Reactions       
Showing 21 reactions
EnvY ompC ompC_mRNA
Name: ompC -> ompC_mRNA
Description: Transcription of transcription unit ompC. Reaction activation by EnvY.
Type: transcription
Pathway Components: ompC - EnvY -> ompC_mRNA
Components:
Function Name Type Evidence Reference(s)
activator EnvY protein nd nd
reactant ompC gene nd nd
product ompC_mRNA RNA nd nd
EnvY ompF ompF_mRNA
Name: ompF -> ompF_mRNA
Description: Transcription of transcription unit ompF. Reaction activation by EnvY.
Type: transcription
Pathway Components: ompF - EnvY -> ompF_mRNA
Components:
Function Name Type Evidence Reference(s)
activator EnvY protein nd nd
reactant ompF gene nd nd
product ompF_mRNA RNA nd nd
ompF_mRNA OmpF
Name: ompF_mRNA -> OmpF
Description: Translation of OmpF
Type: translation
Pathway Components: ompF_mRNA -> OmpF
Components:
Function Name Type Evidence Reference(s)
product OmpF protein nd nd
reactant ompF_mRNA RNA nd nd
OmpC OmpF 5-methylthioribose_Ext 5-methylthioribose
Name: 5-methylthioribose_Ext -> 5-methylthioribose
Description: Transport of 5-methylthioribose_Ext through a bacterial membrane, leading to the presence of 5-methylthioribose inside the cell.
Type: transport
Pathway Components: 5-methylthioribose_Ext - OmpC - OmpF -> 5-methylthioribose
Components:
Function Name Type Evidence Reference(s)
product 5-methylthioribose simple_molecule nd nd
reactant 5-methylthioribose_Ext simple_molecule nd nd
catalyzer OmpC protein nd nd
catalyzer OmpF protein nd nd
OmpC OmpF inositol_Ext inositol
Name: inositol_Ext -> inositol
Description: Transport of inositol_Ext through a bacterial membrane, leading to the presence of inositol inside the cell.
Type: transport
Pathway Components: inositol_Ext - OmpC - OmpF -> inositol
Components:
Function Name Type Evidence Reference(s)
catalyzer OmpC protein nd nd
catalyzer OmpF protein nd nd
product inositol simple_molecule nd nd
reactant inositol_Ext simple_molecule nd nd
OmpC OmpF amino acid_Ext amino acid
Name: amino acid_Ext -> amino acid
Description: Transport of amino acid_Ext through a bacterial membrane, leading to the presence of amino acid inside the cell.
Type: transport
Pathway Components: amino acid_Ext - OmpC - OmpF -> amino acid
Components:
Function Name Type Evidence Reference(s)
catalyzer OmpC protein nd nd
catalyzer OmpF protein nd nd
product amino acid simple_molecule nd nd
reactant amino acid_Ext simple_molecule nd nd
OmpC OmpF base(2)_Ext base(2)
Name: base(2)_Ext -> base(2)
Description: Transport of base(2)_Ext through a bacterial membrane, leading to the presence of base(2) inside the cell.
Type: transport
Pathway Components: base(2)_Ext - OmpC - OmpF -> base(2)
Components:
Function Name Type Evidence Reference(s)
catalyzer OmpC protein nd nd
catalyzer OmpF protein nd nd
product base(2) simple_molecule nd nd
reactant base(2)_Ext simple_molecule nd nd
OmpC OmpF polyol_Ext polyol
Name: polyol_Ext -> polyol
Description: Transport of polyol_Ext through a bacterial membrane, leading to the presence of polyol inside the cell.
Type: transport
Pathway Components: polyol_Ext - OmpC - OmpF -> polyol
Components:
Function Name Type Evidence Reference(s)
catalyzer OmpC protein nd nd
catalyzer OmpF protein nd nd
product polyol simple_molecule nd nd
reactant polyol_Ext simple_molecule nd nd
OmpC OmpF short-chain alcohol_Ext short-chain alcohol
Name: short-chain alcohol_Ext -> short-chain alcohol
Description: Transport of short-chain alcohol_Ext through a bacterial membrane, leading to the presence of short-chain alcohol inside the cell.
Type: transport
Pathway Components: short-chain alcohol_Ext - OmpC - OmpF -> short-chain alcohol
Components:
Function Name Type Evidence Reference(s)
catalyzer OmpC protein nd nd
catalyzer OmpF protein nd nd
product short-chain alcohol simple_molecule nd nd
reactant short-chain alcohol_Ext simple_molecule nd nd
OmpC OmpF short-chain acid anion_Ext short-chain acid anion
Name: short-chain acid anion_Ext -> short-chain acid anion
Description: Transport of short-chain acid anion_Ext through a bacterial membrane, leading to the presence of short-chain acid anion inside the cell.
Type: transport
Pathway Components: short-chain acid anion_Ext - OmpC - OmpF -> short-chain acid anion
Components:
Function Name Type Evidence Reference(s)
catalyzer OmpC protein nd nd
catalyzer OmpF protein nd nd
product short-chain acid anion simple_molecule nd nd
reactant short-chain acid anion_Ext simple_molecule nd nd
OmpC OmpF organosulfur compound_Ext organosulfur compound
Name: organosulfur compound_Ext -> organosulfur compound
Description: Transport of organosulfur compound_Ext through a bacterial membrane, leading to the presence of organosulfur compound inside the cell.
Type: transport
Pathway Components: organosulfur compound_Ext - OmpC - OmpF -> organosulfur compound
Components:
Function Name Type Evidence Reference(s)
catalyzer OmpC protein nd nd
catalyzer OmpF protein nd nd
product organosulfur compound simple_molecule nd nd
reactant organosulfur compound_Ext simple_molecule nd nd
OmpC OmpF CO2_Ext CO2
Name: CO2_Ext -> CO2
Description: Transport of CO2_Ext through a bacterial membrane, leading to the presence of CO2 inside the cell.
Type: transport
Pathway Components: CO2_Ext - OmpC - OmpF -> CO2
Components:
Function Name Type Evidence Reference(s)
product CO2 simple_molecule nd nd
reactant CO2_Ext simple_molecule nd nd
catalyzer OmpC protein nd nd
catalyzer OmpF protein nd nd
OmpC OmpF ion_Ext ion
Name: ion_Ext -> ion
Description: Transport of ion_Ext through a bacterial membrane, leading to the presence of ion inside the cell.
Type: transport
Pathway Components: ion_Ext - OmpC - OmpF -> ion
Components:
Function Name Type Evidence Reference(s)
catalyzer OmpC protein nd nd
catalyzer OmpF protein nd nd
product ion simple_molecule nd nd
reactant ion_Ext simple_molecule nd nd
OmpC OmpF monosaccharide_Ext monosaccharide
Name: monosaccharide_Ext -> monosaccharide
Description: Transport of monosaccharide_Ext through a bacterial membrane, leading to the presence of monosaccharide inside the cell.
Type: transport
Pathway Components: monosaccharide_Ext - OmpC - OmpF -> monosaccharide
Components:
Function Name Type Evidence Reference(s)
catalyzer OmpC protein nd nd
catalyzer OmpF protein nd nd
product monosaccharide simple_molecule nd nd
reactant monosaccharide_Ext simple_molecule nd nd
OmpC OmpF beta-Neu5Ac_Ext beta-Neu5Ac
Name: beta-Neu5Ac_Ext -> beta-Neu5Ac
Description: Transport of beta-Neu5Ac_Ext through a bacterial membrane, leading to the presence of beta-Neu5Ac inside the cell.
Type: transport
Pathway Components: beta-Neu5Ac_Ext - OmpC - OmpF -> beta-Neu5Ac
Components:
Function Name Type Evidence Reference(s)
catalyzer OmpC protein nd nd
catalyzer OmpF protein nd nd
product beta-Neu5Ac simple_molecule nd nd
reactant beta-Neu5Ac_Ext simple_molecule nd nd
OmpC OmpF N-acetylneuraminate_Ext N-acetylneuraminate
Name: N-acetylneuraminate_Ext -> N-acetylneuraminate
Description: Transport of N-acetylneuraminate_Ext through a bacterial membrane, leading to the presence of N-acetylneuraminate inside the cell.
Type: transport
Pathway Components: N-acetylneuraminate_Ext - OmpC - OmpF -> N-acetylneuraminate
Components:
Function Name Type Evidence Reference(s)
product N-acetylneuraminate simple_molecule nd nd
reactant N-acetylneuraminate_Ext simple_molecule nd nd
catalyzer OmpC protein nd nd
catalyzer OmpF protein nd nd
OmpC OmpF betaine_Ext betaine
Name: betaine_Ext -> betaine
Description: Transport of betaine_Ext through a bacterial membrane, leading to the presence of betaine inside the cell.
Type: transport
Pathway Components: betaine_Ext - OmpC - OmpF -> betaine
Components:
Function Name Type Evidence Reference(s)
catalyzer OmpC protein nd nd
catalyzer OmpF protein nd nd
product betaine simple_molecule nd nd
reactant betaine_Ext simple_molecule nd nd
OmpC OmpF hydrophilic solute or ion 600 Da_Ext hydrophilic solute or ion 600 Da
Name: hydrophilic solute or ion 600 Da_Ext -> hydrophilic solute or ion 600 Da
Description: Transport of hydrophilic solute or ion 600 Da_Ext through a bacterial membrane, leading to the presence of hydrophilic solute or ion 600 Da inside the cell.
Type: transport
Pathway Components: hydrophilic solute or ion 600 Da_Ext - OmpC - OmpF -> hydrophilic solute or ion 600 Da
Components:
Function Name Type Evidence Reference(s)
catalyzer OmpC protein nd nd
catalyzer OmpF protein nd nd
product hydrophilic solute or ion 600 Da simple_molecule nd nd
reactant hydrophilic solute or ion 600 Da_Ext simple_molecule nd nd
TolB + OmpF TolB-OmpF
Name: TolB + OmpF -> TolB-OmpF
Description: Reaction transforming TolB, OmpF into TolB-OmpF
Type: state transition
Pathway Components: TolB + OmpF -> TolB-OmpF
Components:
Function Name Type Evidence Reference(s)
reactant OmpF protein nd nd
reactant TolB protein nd nd
product TolB-OmpF complex nd nd
ompC_mRNA OmpC
Name: ompC_mRNA -> OmpC
Description: Translation of OmpC
Type: translation
Pathway Components: ompC_mRNA -> OmpC
Components:
Function Name Type Evidence Reference(s)
product OmpC protein nd nd
reactant ompC_mRNA RNA nd nd
OmpC C4-dicarboxylate_Ext C4-dicarboxylate
Name: C4-dicarboxylate_Ext -> C4-dicarboxylate
Description: Transport of C4-dicarboxylate_Ext through a bacterial membrane, leading to the presence of C4-dicarboxylate inside the cell.
Type: transport
Pathway Components: C4-dicarboxylate_Ext - OmpC -> C4-dicarboxylate
Components:
Function Name Type Evidence Reference(s)
product C4-dicarboxylate simple_molecule nd nd
reactant C4-dicarboxylate_Ext simple_molecule nd nd
catalyzer OmpC protein nd nd



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