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DinJ-YafQ Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
CspE DinJ DinJ-YafQ YafQ ssRNA an mRNA cspE cspE_mRNA dinJ-yafQ dinJ-yafQ_mRNA


Gensor Unit       
Name: DinJ-YafQ
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic
GO:0006402 - mRNA catabolic process
GO:2000143 - negative regulation of DNA-templated transcription, initiation
GO:0060567 - negative regulation of DNA-templated transcription, termination
GO:0090305 - nucleic acid phosphodiester bond hydrolysis
GO:0046677 - response to antibiotic
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cellular_component GO:0005829 - cytosol
molecular_function GO:0003677 - DNA binding
GO:0003723 - RNA binding
GO:0000986 - bacterial-type proximal promoter sequence-specific DNA binding
GO:0004521 - endoribonuclease activity
GO:0016892 - endoribonuclease activity, producing 3'-phosphomonoesters
GO:0008143 - poly(A) binding
GO:0005515 - protein binding
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Components: Show/Hide Components Table (11 more...)
Function Name Type
protein CspE protein
protein DinJ protein
protein DinJ-YafQ protein
protein YafQ protein
complex YafQ-DinJ complex
gene cspE gene
RNA cspE_mRNA RNA
gene dinJ-yafQ gene
RNA dinJ-yafQ_mRNA RNA
simple_molecule mRNA simple_molecule
simple_molecule single-stranded RNA simple_molecule


Reactions       
Showing 7 reactions
DinJ-YafQ cspE cspE_mRNA
Name: cspE -> cspE_mRNA
Description: Transcription of transcription unit cspE. Reaction inhibition by DinJ-YafQ.
Type: transcription
Pathway Components: cspE - DinJ-YafQ -> cspE_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor DinJ-YafQ protein nd nd
reactant cspE gene nd nd
product cspE_mRNA RNA nd nd
DinJ-YafQ dinJ-yafQ dinJ-yafQ_mRNA
Name: dinJ-yafQ -> dinJ-yafQ_mRNA
Description: Transcription of transcription unit dinJ-yafQ. Reaction inhibition by DinJ-YafQ.
Type: transcription
Pathway Components: dinJ-yafQ - DinJ-YafQ -> dinJ-yafQ_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor DinJ-YafQ protein nd nd
reactant dinJ-yafQ gene nd nd
product dinJ-yafQ_mRNA RNA nd nd
cspE_mRNA CspE
Name: cspE_mRNA -> CspE
Description: Translation of CspE
Type: translation
Pathway Components: cspE_mRNA -> CspE
Components:
Function Name Type Evidence Reference(s)
product CspE protein nd nd
reactant cspE_mRNA RNA nd nd
dinJ-yafQ_mRNA DinJ
Name: dinJ-yafQ_mRNA -> DinJ
Description: Translation of DinJ
Type: translation
Pathway Components: dinJ-yafQ_mRNA -> DinJ
Components:
Function Name Type Evidence Reference(s)
product DinJ protein nd nd
reactant dinJ-yafQ_mRNA RNA nd nd
DinJ + YafQ YafQ-DinJ
Name: DinJ + YafQ -> YafQ-DinJ
Description: Reaction transforming DinJ, YafQ into YafQ-DinJ
Type: state transition
Pathway Components: DinJ + YafQ -> YafQ-DinJ
Components:
Function Name Type Evidence Reference(s)
reactant DinJ protein nd nd
reactant YafQ protein nd nd
product YafQ-DinJ complex nd nd
dinJ-yafQ_mRNA YafQ
Name: dinJ-yafQ_mRNA -> YafQ
Description: Translation of YafQ
Type: translation
Pathway Components: dinJ-yafQ_mRNA -> YafQ
Components:
Function Name Type Evidence Reference(s)
product YafQ protein nd nd
reactant dinJ-yafQ_mRNA RNA nd nd
YafQ mRNA single-stranded RNA
Name: mRNA -> single-stranded RNA
Description: Reaction transforming mRNA into single-stranded RNA
Type: state transition
Pathway Components: mRNA - YafQ -> single-stranded RNA
Components:
Function Name Type Evidence Reference(s)
catalyzer YafQ protein nd nd
reactant mRNA simple_molecule nd nd
product single-stranded RNA simple_molecule nd nd



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