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DinJ-YafQ Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
CspE DinJ DinJ-YafQ YafQ ssRNA an mRNA cspE cspE_mRNA dinJ-yafQ dinJ-yafQ_mRNA


Gensor Unit       
Name: DinJ-YafQ
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0000986 - bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding
GO:0008143 - poly(A) binding
GO:0004519 - endonuclease activity
GO:0044010 - single-species biofilm formation
GO:0003676 - nucleic acid binding
GO:0005737 - cytoplasm
GO:0046677 - response to antibiotic
GO:2000143 - negative regulation of DNA-templated transcription, initiation
GO:0003677 - DNA binding
GO:0003723 - RNA binding
GO:0015643 - toxic substance binding
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Components:
Function Name Type
RNA dinJ-yafQ_mRNA RNA


Reactions       
Showing 6 reactions
cspE cspE_mRNA
Name: cspE -> cspE_mRNA
Description: Transcription of transcription unit cspE; reaction inhibition by DinJ-YafQ.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant cspE gene nd nd
product cspE_mRNA RNA nd nd
dinJ-yafQ dinJ-yafQ_mRNA
Name: dinJ-yafQ -> dinJ-yafQ_mRNA
Description: Transcription of transcription unit dinJ-yafQ; reaction inhibition by DinJ-YafQ.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant dinJ-yafQ gene nd nd
product dinJ-yafQ_mRNA RNA nd nd
dinJ-yafQ_mRNA DinJ
Name: dinJ-yafQ_mRNA -> DinJ
Description: Translation of DinJ
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant dinJ-yafQ_mRNA RNA nd nd
product DinJ protein nd nd
cspE_mRNA CspE
Name: cspE_mRNA -> CspE
Description: Translation of CspE
Type: translation
Components:
Function Name Type Evidence Reference(s)
product CspE protein nd nd
reactant cspE_mRNA RNA nd nd
dinJ-yafQ_mRNA YafQ
Name: dinJ-yafQ_mRNA -> YafQ
Description: Translation of YafQ
Type: translation
Components:
Function Name Type Evidence Reference(s)
product YafQ protein nd nd
reactant dinJ-yafQ_mRNA RNA nd nd
mRNA ssRNA
Name: mRNA -> ssRNA
Description: Reaction transforming mRNA into ssRNA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant mRNA simple molecule nd nd
product ssRNA simple molecule nd nd



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