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DcuR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
D-malate D-malate_Ext L-malate L-malate_Ext D-tartrate D-tartrate_Ext DctA DcuB DcuR DpiA DpiB FrdA FrdB FrdC FrdD FumB asp asp_Ext phosphate a C4-dicarboxylate a C4-dicarboxylate_Ext a menaquinol menaquinone dctA dctA_mRNA dcuB-fumB dcuB-fumB_mRNA dpiBA dpiBA_mRNA frdABCD frdABCD_mRNA fumarate fumarate_Ext orotate orotate_Ext oxalacetate succinate DcuR phosphate succinate succinate_Ext succinate fumarate succinate FrdA FrdB FrdC FrdD


Gensor Unit       
Name: DcuR
Classification:
Groups: GUs related to the two-component system
Gene Ontology Terms (GO): GO:0071310 - cellular response to organic substance
GO:0016491 - oxidoreductase activity
GO:0016020 - membrane
GO:0006099 - tricarboxylic acid cycle
GO:0003824 - catalytic activity
GO:0071973 - bacterial-type flagellum-dependent cell motility
GO:0070778 - L-aspartate transport
GO:0015366 - malate:proton symporter activity
GO:0022900 - electron transport chain
GO:0006106 - fumarate metabolic process
GO:0005887 - integral component of plasma membrane
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Components:
Function Name Type
complex FrdA-FrdB-FrdC-FrdD complex


Reactions       
Showing 29 reactions
DcuR + phosphate DcuR-Phosphorylated
Name: DcuR + phosphate -> DcuR-Phosphorylated
Description: Reaction transforming DcuR, phosphate into DcuR-Phosphorylated
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant DcuR protein nd nd
reactant phosphate simple molecule nd nd
product DcuR-Phosphorylated complex nd nd
dctA dctA_mRNA
Name: dctA -> dctA_mRNA
Description: Transcription of transcription unit dctA; reaction activation by DcuR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product dctA_mRNA RNA nd nd
reactant dctA gene nd nd
dcuB-fumB dcuB-fumB_mRNA
Name: dcuB-fumB -> dcuB-fumB_mRNA
Description: Transcription of transcription unit dcuB-fumB; reaction activation by DcuR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant dcuB-fumB gene nd nd
product dcuB-fumB_mRNA RNA nd nd
dpiBA dpiBA_mRNA
Name: dpiBA -> dpiBA_mRNA
Description: Transcription of transcription unit dpiBA; reaction activation by DcuR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant dpiBA gene nd nd
product dpiBA_mRNA RNA nd nd
frdABCD frdABCD_mRNA
Name: frdABCD -> frdABCD_mRNA
Description: Transcription of transcription unit frdABCD; reaction activation by DcuR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product frdABCD_mRNA RNA nd nd
reactant frdABCD gene nd nd
dcuB-fumB_mRNA FumB
Name: dcuB-fumB_mRNA -> FumB
Description: Translation of FumB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FumB protein nd nd
reactant dcuB-fumB_mRNA RNA nd nd
L-malate fumarate
Name: L-malate -> fumarate
Description: Reaction transforming L-malate into fumarate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product fumarate simple molecule nd nd
reactant L-malate simple molecule nd nd
D-tartrate oxalacetate
Name: D-tartrate -> oxalacetate
Description: Reaction transforming D-tartrate into oxalacetate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product oxalacetate simple molecule nd nd
reactant D-tartrate simple molecule nd nd
frdABCD_mRNA FrdC
Name: frdABCD_mRNA -> FrdC
Description: Translation of FrdC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FrdC protein nd nd
reactant frdABCD_mRNA RNA nd nd
fumarate + a menaquinol menaquinone + suc
Name: fumarate + a menaquinol -> menaquinone + suc
Description: Reaction transforming fumarate, a menaquinol into menaquinone, suc
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant fumarate simple molecule nd nd
product menaquinone simple molecule nd nd
reactant a menaquinol simple molecule nd nd
product suc simple molecule nd nd
dpiBA_mRNA DpiA
Name: dpiBA_mRNA -> DpiA
Description: Translation of DpiA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product DpiA protein nd nd
reactant dpiBA_mRNA RNA nd nd
frdABCD_mRNA FrdD
Name: frdABCD_mRNA -> FrdD
Description: Translation of FrdD
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant frdABCD_mRNA RNA nd nd
product FrdD protein nd nd
dpiBA_mRNA DpiB
Name: dpiBA_mRNA -> DpiB
Description: Translation of DpiB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant dpiBA_mRNA RNA nd nd
product DpiB protein nd nd
dcuB-fumB_mRNA DcuB
Name: dcuB-fumB_mRNA -> DcuB
Description: Translation of DcuB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product DcuB protein nd nd
reactant dcuB-fumB_mRNA RNA nd nd
D-tartrate_Ext + suc_Ext suc + D-tartrate
Name: D-tartrate_Ext + suc_Ext -> suc + D-tartrate
Description: Transport of D-tartrate_Ext, suc_Ext through a bacterial membrane, leading to the presence of suc, D-tartrate inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant D-tartrate_Ext simple molecule nd nd
product D-tartrate simple molecule nd nd
reactant suc_Ext simple molecule nd nd
product suc simple molecule nd nd
a C4-dicarboxylate_Ext a C4-dicarboxylate
Name: a C4-dicarboxylate_Ext -> a C4-dicarboxylate
Description: Transport of a C4-dicarboxylate_Ext through a bacterial membrane, leading to the presence of a C4-dicarboxylate inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant a C4-dicarboxylate_Ext simple molecule nd nd
product a C4-dicarboxylate simple molecule nd nd
suc_Ext + L-malate_Ext L-malate + suc
Name: suc_Ext + L-malate_Ext -> L-malate + suc
Description: Transport of suc_Ext, L-malate_Ext through a bacterial membrane, leading to the presence of L-malate, suc inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant suc_Ext simple molecule nd nd
product L-malate simple molecule nd nd
reactant L-malate_Ext simple molecule nd nd
product suc simple molecule nd nd
suc_Ext + asp_Ext asp + suc
Name: suc_Ext + asp_Ext -> asp + suc
Description: Transport of suc_Ext, asp_Ext through a bacterial membrane, leading to the presence of asp, suc inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant suc_Ext simple molecule nd nd
reactant asp_Ext simple molecule nd nd
product asp simple molecule nd nd
product suc simple molecule nd nd
suc_Ext + fumarate_Ext fumarate + suc
Name: suc_Ext + fumarate_Ext -> fumarate + suc
Description: Transport of suc_Ext, fumarate_Ext through a bacterial membrane, leading to the presence of fumarate, suc inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product fumarate simple molecule nd nd
reactant fumarate_Ext simple molecule nd nd
reactant suc_Ext simple molecule nd nd
product suc simple molecule nd nd
frdABCD_mRNA FrdA
Name: frdABCD_mRNA -> FrdA
Description: Translation of FrdA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FrdA protein nd nd
reactant frdABCD_mRNA RNA nd nd
dctA_mRNA DctA
Name: dctA_mRNA -> DctA
Description: Translation of DctA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant dctA_mRNA RNA nd nd
product DctA protein nd nd
D-malate_Ext D-malate
Name: D-malate_Ext -> D-malate
Description: Transport of D-malate_Ext through a bacterial membrane, leading to the presence of D-malate inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product D-malate simple molecule nd nd
reactant D-malate_Ext simple molecule nd nd
asp_Ext asp
Name: asp_Ext -> asp
Description: Transport of asp_Ext through a bacterial membrane, leading to the presence of asp inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product asp simple molecule nd nd
reactant asp_Ext simple molecule nd nd
orotate_Ext orotate
Name: orotate_Ext -> orotate
Description: Transport of orotate_Ext through a bacterial membrane, leading to the presence of orotate inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product orotate simple molecule nd nd
reactant orotate_Ext simple molecule nd nd
fumarate_Ext fumarate
Name: fumarate_Ext -> fumarate
Description: Transport of fumarate_Ext through a bacterial membrane, leading to the presence of fumarate inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product fumarate simple molecule nd nd
reactant fumarate_Ext simple molecule nd nd
L-malate_Ext L-malate
Name: L-malate_Ext -> L-malate
Description: Transport of L-malate_Ext through a bacterial membrane, leading to the presence of L-malate inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant L-malate_Ext simple molecule nd nd
product L-malate simple molecule nd nd
suc_Ext suc
Name: suc_Ext -> suc
Description: Transport of suc_Ext through a bacterial membrane, leading to the presence of suc inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant suc_Ext simple molecule nd nd
product suc simple molecule nd nd
frdABCD_mRNA FrdB
Name: frdABCD_mRNA -> FrdB
Description: Translation of FrdB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant frdABCD_mRNA RNA nd nd
product FrdB protein nd nd
FrdA + FrdB + FrdC + FrdD FrdA-FrdB-FrdC-FrdD
Name: FrdA + FrdB + FrdC + FrdD -> FrdA-FrdB-FrdC-FrdD
Description: Reaction transforming FrdA, FrdB, FrdC, FrdD into FrdA-FrdB-FrdC-FrdD
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant FrdD protein nd nd
reactant FrdA protein nd nd
reactant FrdB protein nd nd
product FrdA-FrdB-FrdC-FrdD complex nd nd
reactant FrdC protein nd nd



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