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CytR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
2'-deoxy-alpha-D-ribose 1-phosphate 2'-deoxyadenosine 2'-deoxyadenosine_Ext 2'-deoxycytidine 2'-deoxycytidine_Ext 2'-deoxyguanosine 2'-deoxyinosine 2'-deoxyinosine_Ext 2'-deoxyuridine 2'-deoxyuridine_Ext 2-deoxy-D-ribose-5-phosphate Cdd CytR cytidine D-glyceraldehyde 3-phosphate ribose-5P DeoA DeoB DeoC DeoD NupC NupG PpiA RpoH Tsx Udp YcdZ nucleoside nucleoside_Ext acetaldehyde adenine adenosine adenosine_Ext alpha-D-ribose 1-phosphate ammonia cdd cdd_mRNA cytR cytR_mRNA cytidine cytidine_Ext deoCABD deoCABD_mRNA guanine guanosine hypoxanthine inosine inosine_Ext nupC nupC_mRNA nupG nupG_mRNA peptidylproline (omega = 0) peptidylproline (omega = 180) ppiA ppiA_mRNA rpoH rpoH_mRNA thymidine thymidine_Ext thymine tsx tsx_mRNA udp udp_mRNA uracil uridine uridine_Ext xanthosine xanthosine_Ext ycdZ ycdZ_mRNA CytR cytidine alpha-D-ribose 1-phosphate 2'-deoxy-alpha-D-ribose 1-phosphate uracil uridine ammonia 2'-deoxy-alpha-D-ribose 1-phosphate adenine hypoxanthine alpha-D-ribose 1-phosphate alpha-D-ribose 1-phosphate


Gensor Unit       
Name: CytR
Description: Molecular biology level
Detailed: In the absence of cytidine CytR negatively regulates the expression of genes required for nucleoside transport and catabolic processes. Under this condition, CytR bind its target sites, preventing/avoiding/hindering its own expression and the expression of its regulated genes. In the presence of cytidine, CytR is modified to CytR-cytidine, unbinds its target sites, enabling the expression of its regulated genes, included its own expression.
Less detailed: In the absence of cytidine CytR negatively regulates the expression of genes needed for nucleoside transport and catabolic processes.

Physiology level
Detailed: The presence of cytidine induces the expression of the genes involved with the transport and catabolism of nucleosides. Under this condition, the genes necessary for the transport of uridine, inosine, 2'.deoxyuridine, etc. and their transformation to ribose, ammonia, acetaldehyde and glyceraldehyde-3-P, are expressed.
Less detailed: The presence of cytidine induces the expression of genes needful for the transport of nucleosides (e.g., uridine, inosine, 2'-deoxyuridine, etc.) and their transformation to ribose, ammonia, acetaldehyde, and glyceraldehyde-3-P.
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0046050 - UMP catabolic process
GO:0032238 - adenosine transport
GO:0001121 - bacterial transcription
GO:0016052 - carbohydrate catabolic process
GO:0006974 - cellular response to DNA damage stimulus
GO:0009972 - cytidine deamination
Read more >
cellular_component GO:0009279 - cell outer membrane
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
GO:0016020 - membrane
GO:0030288 - outer membrane-bounded periplasmic space
GO:0005886 - plasma membrane
Read more >
molecular_function GO:0003677 - DNA binding
GO:0016987 - bacterial sigma factor activity
GO:0004126 - cytidine deaminase activity
GO:0015212 - cytidine transmembrane transporter activity
GO:0047844 - deoxycytidine deaminase activity
GO:0004139 - deoxyribose-phosphate aldolase activity
GO:0042802 - identical protein binding
Read more >
Components: Show/Hide Components Table (89 more...)
Function Name Type
simple_molecule 2-deoxy-D-ribose 5-phosphate simple_molecule
protein Cdd protein
protein CytR protein
complex CytR-cytidine complex
simple_molecule DNA containing an apurinic site simple_molecule
simple_molecule DNA with G-A mismatch simple_molecule
protein DeoA protein
protein DeoB protein
protein DeoC protein
protein DeoD protein
simple_molecule GlcNAc-1,6-anhydro-MurNAc-pentapeptide simple_molecule
protein MltC protein
protein MutY protein
protein NupC protein
protein NupG protein
protein PpiA protein
protein RpoA protein
protein RpoB protein
complex RpoB-RpoC-RpoA-RpoH complex
protein RpoC protein
protein RpoH protein
protein Tsx protein
protein Udp protein
protein YcdZ protein
protein YggX protein
simple_molecule adenine simple_molecule
simple_molecule adenosine simple_molecule
simple_molecule adenosine_Ext simple_molecule
simple_molecule ammonium simple_molecule
gene cdd gene
RNA cdd_mRNA RNA
gene cytR gene
RNA cytR_mRNA RNA
simple_molecule cytidine simple_molecule
simple_molecule cytidine_Ext simple_molecule
simple_molecule d-cytidine simple_molecule
simple_molecule d-cytidine_Ext simple_molecule
gene deoCABD gene
RNA deoCABD_mRNA RNA
simple_molecule deoxy-D-ribose 1-phosphate simple_molecule
simple_molecule deoxyadenosine simple_molecule
simple_molecule deoxyadenosine_Ext simple_molecule
simple_molecule deoxyguanosine simple_molecule
simple_molecule deoxyinosine simple_molecule
simple_molecule deoxyinosine_Ext simple_molecule
simple_molecule deoxyuridine simple_molecule
simple_molecule deoxyuridine_Ext simple_molecule
simple_molecule ethanal simple_molecule
simple_molecule glyceraldehyde-P simple_molecule
simple_molecule guanine simple_molecule
simple_molecule guanosine simple_molecule
simple_molecule hypoxanthine simple_molecule
simple_molecule inosine simple_molecule
simple_molecule inosine_Ext simple_molecule
simple_molecule lipid II simple_molecule
gene mutY-yggX-mltC-nupG gene
RNA mutY-yggX-mltC-nupG_mRNA RNA
simple_molecule nebularine simple_molecule
simple_molecule nucleoside simple_molecule
simple_molecule nucleoside_Ext simple_molecule
gene nupC gene
RNA nupC_mRNA RNA
gene nupG gene
RNA nupG_mRNA RNA
simple_molecule peptidoglycan dimer (generic) simple_molecule
simple_molecule peptidylproline (ω = 0) simple_molecule
simple_molecule peptidylproline (ω = 180) simple_molecule
simple_molecule phosphate simple_molecule
gene ppiA gene
RNA ppiA_mRNA RNA
simple_molecule purine base simple_molecule
simple_molecule ribose-1-phosphate simple_molecule
simple_molecule ribose-5P simple_molecule
gene rpoH gene
RNA rpoH_mRNA RNA
simple_molecule thymidine simple_molecule
simple_molecule thymidine_Ext simple_molecule
simple_molecule thymine simple_molecule
gene tsx gene
RNA tsx_mRNA RNA
gene udp gene
RNA udp_mRNA RNA
simple_molecule uracil simple_molecule
simple_molecule uridine simple_molecule
simple_molecule uridine_Ext simple_molecule
simple_molecule xanthosine simple_molecule
simple_molecule xanthosine_Ext simple_molecule
gene ycdZ gene
RNA ycdZ_mRNA RNA


Reactions       
Showing 61 reactions
CytR cdd cdd_mRNA
Name: cdd -> cdd_mRNA
Description: Transcription of transcription unit cdd. Reaction inhibition by CytR.
Type: transcription
Pathway Components: cdd - CytR -> cdd_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor CytR protein nd nd
reactant cdd gene nd nd
product cdd_mRNA RNA nd nd
CytR cytR cytR_mRNA
Name: cytR -> cytR_mRNA
Description: Transcription of transcription unit cytR. Reaction inhibition by CytR.
Type: transcription
Pathway Components: cytR - CytR -> cytR_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor CytR protein nd nd
reactant cytR gene nd nd
product cytR_mRNA RNA nd nd
CytR deoCABD deoCABD_mRNA
Name: deoCABD -> deoCABD_mRNA
Description: Transcription of transcription unit deoCABD. Reaction inhibition by CytR.
Type: transcription
Pathway Components: deoCABD - CytR -> deoCABD_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor CytR protein nd nd
reactant deoCABD gene nd nd
product deoCABD_mRNA RNA nd nd
CytR mutY-yggX-mltC-nupG mutY-yggX-mltC-nupG_mRNA
Name: mutY-yggX-mltC-nupG -> mutY-yggX-mltC-nupG_mRNA
Description: Transcription of transcription unit mutY-yggX-mltC-nupG. Reaction inhibition by CytR.
Type: transcription
Pathway Components: mutY-yggX-mltC-nupG - CytR -> mutY-yggX-mltC-nupG_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor CytR protein nd nd
reactant mutY-yggX-mltC-nupG gene nd nd
product mutY-yggX-mltC-nupG_mRNA RNA nd nd
CytR nupC nupC_mRNA
Name: nupC -> nupC_mRNA
Description: Transcription of transcription unit nupC. Reaction inhibition by CytR.
Type: transcription
Pathway Components: nupC - CytR -> nupC_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor CytR protein nd nd
reactant nupC gene nd nd
product nupC_mRNA RNA nd nd
CytR ppiA ppiA_mRNA
Name: ppiA -> ppiA_mRNA
Description: Transcription of transcription unit ppiA. Reaction inhibition by CytR.
Type: transcription
Pathway Components: ppiA - CytR -> ppiA_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor CytR protein nd nd
reactant ppiA gene nd nd
product ppiA_mRNA RNA nd nd
CytR rpoH rpoH_mRNA
Name: rpoH -> rpoH_mRNA
Description: Transcription of transcription unit rpoH. Reaction inhibition by CytR.
Type: transcription
Pathway Components: rpoH - CytR -> rpoH_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor CytR protein nd nd
reactant rpoH gene nd nd
product rpoH_mRNA RNA nd nd
CytR tsx tsx_mRNA
Name: tsx -> tsx_mRNA
Description: Transcription of transcription unit tsx. Reaction inhibition by CytR.
Type: transcription
Pathway Components: tsx - CytR -> tsx_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor CytR protein nd nd
reactant tsx gene nd nd
product tsx_mRNA RNA nd nd
CytR udp udp_mRNA
Name: udp -> udp_mRNA
Description: Transcription of transcription unit udp. Reaction inhibition by CytR.
Type: transcription
Pathway Components: udp - CytR -> udp_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor CytR protein nd nd
reactant udp gene nd nd
product udp_mRNA RNA nd nd
CytR ycdZ ycdZ_mRNA
Name: ycdZ -> ycdZ_mRNA
Description: Transcription of transcription unit ycdZ. Reaction inhibition by CytR.
Type: transcription
Pathway Components: ycdZ - CytR -> ycdZ_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor CytR protein nd nd
reactant ycdZ gene nd nd
product ycdZ_mRNA RNA nd nd
cytidine + CytR CytR-cytidine
Name: cytidine + CytR -> CytR-cytidine
Description: Reaction transforming cytidine, CytR into CytR-cytidine
Type: state transition
Pathway Components: cytidine + CytR -> CytR-cytidine
Components:
Function Name Type Evidence Reference(s)
reactant CytR protein nd nd
product CytR-cytidine complex nd nd
reactant cytidine simple_molecule nd nd
CytR nupG nupG_mRNA
Name: nupG -> nupG_mRNA
Description: Transcription of transcription unit nupG. Reaction inhibition by CytR.
Type: transcription
Pathway Components: nupG - CytR -> nupG_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor CytR protein nd nd
reactant nupG gene nd nd
product nupG_mRNA RNA nd nd
mutY-yggX-mltC-nupG_mRNA MutY
Name: mutY-yggX-mltC-nupG_mRNA -> MutY
Description: Translation of MutY
Type: translation
Pathway Components: mutY-yggX-mltC-nupG_mRNA -> MutY
Components:
Function Name Type Evidence Reference(s)
product MutY protein nd nd
reactant mutY-yggX-mltC-nupG_mRNA RNA nd nd
MutY DNA with G-A mismatch DNA containing an apurinic site
Name: DNA with G-A mismatch -> DNA containing an apurinic site
Description: Reaction transforming DNA with G-A mismatch into DNA containing an apurinic site
Type: state transition
Pathway Components: DNA with G-A mismatch - MutY -> DNA containing an apurinic site
Components:
Function Name Type Evidence Reference(s)
product DNA containing an apurinic site simple_molecule nd nd
reactant DNA with G-A mismatch simple_molecule nd nd
catalyzer MutY protein nd nd
mutY-yggX-mltC-nupG_mRNA YggX
Name: mutY-yggX-mltC-nupG_mRNA -> YggX
Description: Translation of YggX
Type: translation
Pathway Components: mutY-yggX-mltC-nupG_mRNA -> YggX
Components:
Function Name Type Evidence Reference(s)
product YggX protein nd nd
reactant mutY-yggX-mltC-nupG_mRNA RNA nd nd
mutY-yggX-mltC-nupG_mRNA MltC
Name: mutY-yggX-mltC-nupG_mRNA -> MltC
Description: Translation of MltC
Type: translation
Pathway Components: mutY-yggX-mltC-nupG_mRNA -> MltC
Components:
Function Name Type Evidence Reference(s)
product MltC protein nd nd
reactant mutY-yggX-mltC-nupG_mRNA RNA nd nd
MltC peptidoglycan dimer (generic) GlcNAc-1,6-anhydro-MurNAc-pentapeptide + lipid II
Name: peptidoglycan dimer (generic) -> GlcNAc-1,6-anhydro-MurNAc-pentapeptide + lipid II
Description: Reaction transforming peptidoglycan dimer (generic) into GlcNAc-1,6-anhydro-MurNAc-pentapeptide, lipid II
Type: state transition
Pathway Components: peptidoglycan dimer (generic) - MltC -> GlcNAc-1,6-anhydro-MurNAc-pentapeptide + lipid II
Components:
Function Name Type Evidence Reference(s)
product GlcNAc-1,6-anhydro-MurNAc-pentapeptide simple_molecule nd nd
catalyzer MltC protein nd nd
product lipid II simple_molecule nd nd
reactant peptidoglycan dimer (generic) simple_molecule nd nd
mutY-yggX-mltC-nupG_mRNA NupG
Name: mutY-yggX-mltC-nupG_mRNA -> NupG
Description: Translation of NupG
Type: translation
Pathway Components: mutY-yggX-mltC-nupG_mRNA -> NupG
Components:
Function Name Type Evidence Reference(s)
product NupG protein nd nd
reactant mutY-yggX-mltC-nupG_mRNA RNA nd nd
NupG Tsx nucleoside_Ext nucleoside
Name: nucleoside_Ext -> nucleoside
Description: Transport of nucleoside_Ext through a bacterial membrane, leading to the presence of nucleoside inside the cell.
Type: transport
Pathway Components: nucleoside_Ext - NupG - Tsx -> nucleoside
Components:
Function Name Type Evidence Reference(s)
catalyzer NupG protein nd nd
catalyzer Tsx protein nd nd
product nucleoside simple_molecule nd nd
reactant nucleoside_Ext simple_molecule nd nd
NupC NupG uridine_Ext uridine
Name: uridine_Ext -> uridine
Description: Transport of uridine_Ext through a bacterial membrane, leading to the presence of uridine inside the cell.
Type: transport
Pathway Components: uridine_Ext - NupC - NupG -> uridine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupC protein nd nd
catalyzer NupG protein nd nd
product uridine simple_molecule nd nd
reactant uridine_Ext simple_molecule nd nd
NupC NupG thymidine_Ext thymidine
Name: thymidine_Ext -> thymidine
Description: Transport of thymidine_Ext through a bacterial membrane, leading to the presence of thymidine inside the cell.
Type: transport
Pathway Components: thymidine_Ext - NupC - NupG -> thymidine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupC protein nd nd
catalyzer NupG protein nd nd
product thymidine simple_molecule nd nd
reactant thymidine_Ext simple_molecule nd nd
NupC NupG inosine_Ext inosine
Name: inosine_Ext -> inosine
Description: Transport of inosine_Ext through a bacterial membrane, leading to the presence of inosine inside the cell.
Type: transport
Pathway Components: inosine_Ext - NupC - NupG -> inosine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupC protein nd nd
catalyzer NupG protein nd nd
product inosine simple_molecule nd nd
reactant inosine_Ext simple_molecule nd nd
NupC NupG deoxyuridine_Ext deoxyuridine
Name: deoxyuridine_Ext -> deoxyuridine
Description: Transport of deoxyuridine_Ext through a bacterial membrane, leading to the presence of deoxyuridine inside the cell.
Type: transport
Pathway Components: deoxyuridine_Ext - NupC - NupG -> deoxyuridine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupC protein nd nd
catalyzer NupG protein nd nd
product deoxyuridine simple_molecule nd nd
reactant deoxyuridine_Ext simple_molecule nd nd
NupC NupG deoxyinosine_Ext deoxyinosine
Name: deoxyinosine_Ext -> deoxyinosine
Description: Transport of deoxyinosine_Ext through a bacterial membrane, leading to the presence of deoxyinosine inside the cell.
Type: transport
Pathway Components: deoxyinosine_Ext - NupC - NupG -> deoxyinosine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupC protein nd nd
catalyzer NupG protein nd nd
product deoxyinosine simple_molecule nd nd
reactant deoxyinosine_Ext simple_molecule nd nd
NupC NupG d-cytidine_Ext d-cytidine
Name: d-cytidine_Ext -> d-cytidine
Description: Transport of d-cytidine_Ext through a bacterial membrane, leading to the presence of d-cytidine inside the cell.
Type: transport
Pathway Components: d-cytidine_Ext - NupC - NupG -> d-cytidine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupC protein nd nd
catalyzer NupG protein nd nd
product d-cytidine simple_molecule nd nd
reactant d-cytidine_Ext simple_molecule nd nd
NupC NupG deoxyadenosine_Ext deoxyadenosine
Name: deoxyadenosine_Ext -> deoxyadenosine
Description: Transport of deoxyadenosine_Ext through a bacterial membrane, leading to the presence of deoxyadenosine inside the cell.
Type: transport
Pathway Components: deoxyadenosine_Ext - NupC - NupG -> deoxyadenosine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupC protein nd nd
catalyzer NupG protein nd nd
product deoxyadenosine simple_molecule nd nd
reactant deoxyadenosine_Ext simple_molecule nd nd
NupC NupG cytidine_Ext cytidine
Name: cytidine_Ext -> cytidine
Description: Transport of cytidine_Ext through a bacterial membrane, leading to the presence of cytidine inside the cell.
Type: transport
Pathway Components: cytidine_Ext - NupC - NupG -> cytidine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupC protein nd nd
catalyzer NupG protein nd nd
product cytidine simple_molecule nd nd
reactant cytidine_Ext simple_molecule nd nd
NupC NupG adenosine_Ext adenosine
Name: adenosine_Ext -> adenosine
Description: Transport of adenosine_Ext through a bacterial membrane, leading to the presence of adenosine inside the cell.
Type: transport
Pathway Components: adenosine_Ext - NupC - NupG -> adenosine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupC protein nd nd
catalyzer NupG protein nd nd
product adenosine simple_molecule nd nd
reactant adenosine_Ext simple_molecule nd nd
NupG xanthosine_Ext xanthosine
Name: xanthosine_Ext -> xanthosine
Description: Transport of xanthosine_Ext through a bacterial membrane, leading to the presence of xanthosine inside the cell.
Type: transport
Pathway Components: xanthosine_Ext - NupG -> xanthosine
Components:
Function Name Type Evidence Reference(s)
catalyzer NupG protein nd nd
product xanthosine simple_molecule nd nd
reactant xanthosine_Ext simple_molecule nd nd
cdd_mRNA Cdd
Name: cdd_mRNA -> Cdd
Description: Translation of Cdd
Type: translation
Pathway Components: cdd_mRNA -> Cdd
Components:
Function Name Type Evidence Reference(s)
product Cdd protein nd nd
reactant cdd_mRNA RNA nd nd
Cdd cytidine ammonium + uridine
Name: cytidine -> ammonium + uridine
Description: Reaction transforming cytidine into ammonium, uridine
Type: state transition
Pathway Components: cytidine - Cdd -> ammonium + uridine
Components:
Function Name Type Evidence Reference(s)
catalyzer Cdd protein nd nd
product ammonium simple_molecule nd nd
reactant cytidine simple_molecule nd nd
product uridine simple_molecule nd nd
Cdd d-cytidine deoxyuridine + ammonium
Name: d-cytidine -> deoxyuridine + ammonium
Description: Reaction transforming d-cytidine into deoxyuridine, ammonium
Type: state transition
Pathway Components: d-cytidine - Cdd -> deoxyuridine + ammonium
Components:
Function Name Type Evidence Reference(s)
catalyzer Cdd protein nd nd
product ammonium simple_molecule nd nd
reactant d-cytidine simple_molecule nd nd
product deoxyuridine simple_molecule nd nd
nupG_mRNA NupG
Name: nupG_mRNA -> NupG
Description: Translation of NupG
Type: translation
Pathway Components: nupG_mRNA -> NupG
Components:
Function Name Type Evidence Reference(s)
product NupG protein nd nd
reactant nupG_mRNA RNA nd nd
rpoH_mRNA RpoH
Name: rpoH_mRNA -> RpoH
Description: Translation of RpoH
Type: translation
Pathway Components: rpoH_mRNA -> RpoH
Components:
Function Name Type Evidence Reference(s)
product RpoH protein nd nd
reactant rpoH_mRNA RNA nd nd
RpoH + RpoA + RpoC + RpoB RpoB-RpoC-RpoA-RpoH
Name: RpoH + RpoA + RpoC + RpoB -> RpoB-RpoC-RpoA-RpoH
Description: Reaction transforming RpoH, RpoA, RpoC, RpoB into RpoB-RpoC-RpoA-RpoH
Type: state transition
Pathway Components: RpoH + RpoA + RpoC + RpoB -> RpoB-RpoC-RpoA-RpoH
Components:
Function Name Type Evidence Reference(s)
reactant RpoA protein nd nd
reactant RpoB protein nd nd
product RpoB-RpoC-RpoA-RpoH complex nd nd
reactant RpoC protein nd nd
reactant RpoH protein nd nd
nupC_mRNA NupC
Name: nupC_mRNA -> NupC
Description: Translation of NupC
Type: translation
Pathway Components: nupC_mRNA -> NupC
Components:
Function Name Type Evidence Reference(s)
product NupC protein nd nd
reactant nupC_mRNA RNA nd nd
deoCABD_mRNA DeoC
Name: deoCABD_mRNA -> DeoC
Description: Translation of DeoC
Type: translation
Pathway Components: deoCABD_mRNA -> DeoC
Components:
Function Name Type Evidence Reference(s)
product DeoC protein nd nd
reactant deoCABD_mRNA RNA nd nd
DeoC 2-deoxy-D-ribose 5-phosphate glyceraldehyde-P + ethanal
Name: 2-deoxy-D-ribose 5-phosphate -> glyceraldehyde-P + ethanal
Description: Reaction transforming 2-deoxy-D-ribose 5-phosphate into glyceraldehyde-P, ethanal
Type: state transition
Pathway Components: 2-deoxy-D-ribose 5-phosphate - DeoC -> glyceraldehyde-P + ethanal
Components:
Function Name Type Evidence Reference(s)
reactant 2-deoxy-D-ribose 5-phosphate simple_molecule nd nd
catalyzer DeoC protein nd nd
product ethanal simple_molecule nd nd
product glyceraldehyde-P simple_molecule nd nd
deoCABD_mRNA DeoA
Name: deoCABD_mRNA -> DeoA
Description: Translation of DeoA
Type: translation
Pathway Components: deoCABD_mRNA -> DeoA
Components:
Function Name Type Evidence Reference(s)
product DeoA protein nd nd
reactant deoCABD_mRNA RNA nd nd
DeoA deoxy-D-ribose 1-phosphate ribose-1-phosphate thymine phosphate + thymidine deoxy-D-ribose 1-phosphate + thymine
Name: phosphate + thymidine -> deoxy-D-ribose 1-phosphate + thymine
Description: Reaction transforming phosphate, thymidine into deoxy-D-ribose 1-phosphate, thymine
Type: state transition
Pathway Components: phosphate + thymidine - DeoA - deoxy-D-ribose 1-phosphate - ribose-1-phosphate - thymine -> deoxy-D-ribose 1-phosphate + thymine
Components:
Function Name Type Evidence Reference(s)
catalyzer DeoA protein nd nd
inhibitor deoxy-D-ribose 1-phosphate simple_molecule nd nd
product deoxy-D-ribose 1-phosphate simple_molecule nd nd
reactant phosphate simple_molecule nd nd
inhibitor ribose-1-phosphate simple_molecule nd nd
reactant thymidine simple_molecule nd nd
inhibitor thymine simple_molecule nd nd
product thymine simple_molecule nd nd
DeoA deoxyuridine + phosphate deoxy-D-ribose 1-phosphate + uracil
Name: deoxyuridine + phosphate -> deoxy-D-ribose 1-phosphate + uracil
Description: Reaction transforming deoxyuridine, phosphate into deoxy-D-ribose 1-phosphate, uracil
Type: state transition
Pathway Components: deoxyuridine + phosphate - DeoA -> deoxy-D-ribose 1-phosphate + uracil
Components:
Function Name Type Evidence Reference(s)
catalyzer DeoA protein nd nd
product deoxy-D-ribose 1-phosphate simple_molecule nd nd
reactant deoxyuridine simple_molecule nd nd
reactant phosphate simple_molecule nd nd
product uracil simple_molecule nd nd
deoCABD_mRNA DeoB
Name: deoCABD_mRNA -> DeoB
Description: Translation of DeoB
Type: translation
Pathway Components: deoCABD_mRNA -> DeoB
Components:
Function Name Type Evidence Reference(s)
product DeoB protein nd nd
reactant deoCABD_mRNA RNA nd nd
DeoB deoxy-D-ribose 1-phosphate 2-deoxy-D-ribose 5-phosphate
Name: deoxy-D-ribose 1-phosphate -> 2-deoxy-D-ribose 5-phosphate
Description: Reaction transforming deoxy-D-ribose 1-phosphate into 2-deoxy-D-ribose 5-phosphate
Type: state transition
Pathway Components: deoxy-D-ribose 1-phosphate - DeoB -> 2-deoxy-D-ribose 5-phosphate
Components:
Function Name Type Evidence Reference(s)
product 2-deoxy-D-ribose 5-phosphate simple_molecule nd nd
catalyzer DeoB protein nd nd
reactant deoxy-D-ribose 1-phosphate simple_molecule nd nd
DeoB ribose-1-phosphate ribose-5P
Name: ribose-1-phosphate -> ribose-5P
Description: Reaction transforming ribose-1-phosphate into ribose-5P
Type: state transition
Pathway Components: ribose-1-phosphate - DeoB -> ribose-5P
Components:
Function Name Type Evidence Reference(s)
catalyzer DeoB protein nd nd
reactant ribose-1-phosphate simple_molecule nd nd
product ribose-5P simple_molecule nd nd
deoCABD_mRNA DeoD
Name: deoCABD_mRNA -> DeoD
Description: Translation of DeoD
Type: translation
Pathway Components: deoCABD_mRNA -> DeoD
Components:
Function Name Type Evidence Reference(s)
product DeoD protein nd nd
reactant deoCABD_mRNA RNA nd nd
DeoD nebularine + phosphate ribose-1-phosphate + purine base
Name: nebularine + phosphate -> ribose-1-phosphate + purine base
Description: Reaction transforming nebularine, phosphate into ribose-1-phosphate, purine base
Type: state transition
Pathway Components: nebularine + phosphate - DeoD -> ribose-1-phosphate + purine base
Components:
Function Name Type Evidence Reference(s)
catalyzer DeoD protein nd nd
reactant nebularine simple_molecule nd nd
reactant phosphate simple_molecule nd nd
product purine base simple_molecule nd nd
product ribose-1-phosphate simple_molecule nd nd
DeoD phosphate + guanosine ribose-1-phosphate + guanine
Name: phosphate + guanosine -> ribose-1-phosphate + guanine
Description: Reaction transforming phosphate, guanosine into ribose-1-phosphate, guanine
Type: state transition
Pathway Components: phosphate + guanosine - DeoD -> ribose-1-phosphate + guanine
Components:
Function Name Type Evidence Reference(s)
catalyzer DeoD protein nd nd
product guanine simple_molecule nd nd
reactant guanosine simple_molecule nd nd
reactant phosphate simple_molecule nd nd
product ribose-1-phosphate simple_molecule nd nd
DeoD adenosine deoxyguanosine + phosphate deoxy-D-ribose 1-phosphate + guanine
Name: deoxyguanosine + phosphate -> deoxy-D-ribose 1-phosphate + guanine
Description: Reaction transforming deoxyguanosine, phosphate into deoxy-D-ribose 1-phosphate, guanine
Type: state transition
Pathway Components: deoxyguanosine + phosphate - DeoD - adenosine -> deoxy-D-ribose 1-phosphate + guanine
Components:
Function Name Type Evidence Reference(s)
catalyzer DeoD protein nd nd
inhibitor adenosine simple_molecule nd nd
product deoxy-D-ribose 1-phosphate simple_molecule nd nd
reactant deoxyguanosine simple_molecule nd nd
product guanine simple_molecule nd nd
reactant phosphate simple_molecule nd nd
DeoD phosphate + inosine ribose-1-phosphate + hypoxanthine
Name: phosphate + inosine -> ribose-1-phosphate + hypoxanthine
Description: Reaction transforming phosphate, inosine into ribose-1-phosphate, hypoxanthine
Type: state transition
Pathway Components: phosphate + inosine - DeoD -> ribose-1-phosphate + hypoxanthine
Components:
Function Name Type Evidence Reference(s)
catalyzer DeoD protein nd nd
product hypoxanthine simple_molecule nd nd
reactant inosine simple_molecule nd nd
reactant phosphate simple_molecule nd nd
product ribose-1-phosphate simple_molecule nd nd
DeoD deoxyinosine + phosphate deoxy-D-ribose 1-phosphate + hypoxanthine
Name: deoxyinosine + phosphate -> deoxy-D-ribose 1-phosphate + hypoxanthine
Description: Reaction transforming deoxyinosine, phosphate into deoxy-D-ribose 1-phosphate, hypoxanthine
Type: state transition
Pathway Components: deoxyinosine + phosphate - DeoD -> deoxy-D-ribose 1-phosphate + hypoxanthine
Components:
Function Name Type Evidence Reference(s)
catalyzer DeoD protein nd nd
product deoxy-D-ribose 1-phosphate simple_molecule nd nd
reactant deoxyinosine simple_molecule nd nd
product hypoxanthine simple_molecule nd nd
reactant phosphate simple_molecule nd nd
DeoD phosphate + adenosine ribose-1-phosphate + adenine
Name: phosphate + adenosine -> ribose-1-phosphate + adenine
Description: Reaction transforming phosphate, adenosine into ribose-1-phosphate, adenine
Type: state transition
Pathway Components: phosphate + adenosine - DeoD -> ribose-1-phosphate + adenine
Components:
Function Name Type Evidence Reference(s)
catalyzer DeoD protein nd nd
product adenine simple_molecule nd nd
reactant adenosine simple_molecule nd nd
reactant phosphate simple_molecule nd nd
product ribose-1-phosphate simple_molecule nd nd
DeoD deoxyadenosine + phosphate deoxy-D-ribose 1-phosphate + adenine
Name: deoxyadenosine + phosphate -> deoxy-D-ribose 1-phosphate + adenine
Description: Reaction transforming deoxyadenosine, phosphate into deoxy-D-ribose 1-phosphate, adenine
Type: state transition
Pathway Components: deoxyadenosine + phosphate - DeoD -> deoxy-D-ribose 1-phosphate + adenine
Components:
Function Name Type Evidence Reference(s)
catalyzer DeoD protein nd nd
product adenine simple_molecule nd nd
product deoxy-D-ribose 1-phosphate simple_molecule nd nd
reactant deoxyadenosine simple_molecule nd nd
reactant phosphate simple_molecule nd nd
tsx_mRNA Tsx
Name: tsx_mRNA -> Tsx
Description: Translation of Tsx
Type: translation
Pathway Components: tsx_mRNA -> Tsx
Components:
Function Name Type Evidence Reference(s)
product Tsx protein nd nd
reactant tsx_mRNA RNA nd nd
cytR_mRNA CytR
Name: cytR_mRNA -> CytR
Description: Translation of CytR
Type: translation
Pathway Components: cytR_mRNA -> CytR
Components:
Function Name Type Evidence Reference(s)
product CytR protein nd nd
reactant cytR_mRNA RNA nd nd
ycdZ_mRNA YcdZ
Name: ycdZ_mRNA -> YcdZ
Description: Translation of YcdZ
Type: translation
Pathway Components: ycdZ_mRNA -> YcdZ
Components:
Function Name Type Evidence Reference(s)
product YcdZ protein nd nd
reactant ycdZ_mRNA RNA nd nd
udp_mRNA Udp
Name: udp_mRNA -> Udp
Description: Translation of Udp
Type: translation
Pathway Components: udp_mRNA -> Udp
Components:
Function Name Type Evidence Reference(s)
product Udp protein nd nd
reactant udp_mRNA RNA nd nd
Udp ribose-1-phosphate uracil uridine phosphate + uridine ribose-1-phosphate + uracil
Name: phosphate + uridine -> ribose-1-phosphate + uracil
Description: Reaction transforming phosphate, uridine into ribose-1-phosphate, uracil
Type: state transition
Pathway Components: phosphate + uridine - Udp - ribose-1-phosphate - uracil - uridine -> ribose-1-phosphate + uracil
Components:
Function Name Type Evidence Reference(s)
catalyzer Udp protein nd nd
reactant phosphate simple_molecule nd nd
inhibitor ribose-1-phosphate simple_molecule nd nd
product ribose-1-phosphate simple_molecule nd nd
inhibitor uracil simple_molecule nd nd
product uracil simple_molecule nd nd
inhibitor uridine simple_molecule nd nd
reactant uridine simple_molecule nd nd
ppiA_mRNA PpiA
Name: ppiA_mRNA -> PpiA
Description: Translation of PpiA
Type: translation
Pathway Components: ppiA_mRNA -> PpiA
Components:
Function Name Type Evidence Reference(s)
product PpiA protein nd nd
reactant ppiA_mRNA RNA nd nd
PpiA peptidylproline (ω = 180) peptidylproline (ω = 0)
Name: peptidylproline (ω = 180) -> peptidylproline (ω = 0)
Description: Reaction transforming peptidylproline (ω = 180) into peptidylproline (ω = 0)
Type: state transition
Pathway Components: peptidylproline (ω = 180) - PpiA -> peptidylproline (ω = 0)
Components:
Function Name Type Evidence Reference(s)
catalyzer PpiA protein nd nd
product peptidylproline (ω = 0) simple_molecule nd nd
reactant peptidylproline (ω = 180) simple_molecule nd nd
xanthosine ribose-1-phosphate
Name: xanthosine -> ribose-1-phosphate
Description: Transformation of xanthosine into ribose-1-phosphate by one or more reactions not shown.
Type: complementary pathway reaction
Pathway Components: xanthosine / XANTHOSINEPHOSPHORY-RXN / ribose-1-phosphate
Components:
Function Name Type Evidence Reference(s)
product ribose-1-phosphate simple_molecule nd nd
reactant xanthosine simple_molecule nd nd
adenosine inosine
Name: adenosine -> inosine
Description: Transformation of adenosine into inosine by one or more reactions not shown.
Type: complementary pathway reaction
Pathway Components: adenosine / ADENODEAMIN-RXN / inosine
Components:
Function Name Type Evidence Reference(s)
reactant adenosine simple_molecule nd nd
product inosine simple_molecule nd nd