RegulonDB

Name:

cytR -> cytR_mRNA

Description:

Transcription of transcription unit cytR. Reaction inhibition by CytR.

Type:

transcription

Pathway Components:

cytR - CytR -> cytR_mRNA

Components:

Function	Name	Type
inhibitor	CytR	protein
reactant	cytR	gene
product	cytR_mRNA	RNA

Name:

deoCABD -> deoCABD_mRNA

Description:

Transcription of transcription unit deoCABD. Reaction inhibition by CytR.

Type:

transcription

Pathway Components:

deoCABD - CytR -> deoCABD_mRNA

Components:

Function	Name	Type
inhibitor	CytR	protein
reactant	deoCABD	gene
product	deoCABD_mRNA	RNA

Name:

nupC -> nupC_mRNA

Description:

Transcription of transcription unit nupC. Reaction inhibition by CytR.

Type:

transcription

Pathway Components:

nupC - CytR -> nupC_mRNA

Components:

Function	Name	Type
inhibitor	CytR	protein
reactant	nupC	gene
product	nupC_mRNA	RNA

Name:

nupG -> nupG_mRNA

Description:

Transcription of transcription unit nupG. Reaction inhibition by CytR.

Type:

transcription

Pathway Components:

nupG - CytR -> nupG_mRNA

Components:

Function	Name	Type
inhibitor	CytR	protein
reactant	nupG	gene
product	nupG_mRNA	RNA

Name:

ppiA -> ppiA_mRNA

Description:

Transcription of transcription unit ppiA. Reaction inhibition by CytR.

Type:

transcription

Pathway Components:

ppiA - CytR -> ppiA_mRNA

Components:

Function	Name	Type
inhibitor	CytR	protein
reactant	ppiA	gene
product	ppiA_mRNA	RNA

Name:

rpoH -> rpoH_mRNA

Description:

Transcription of transcription unit rpoH. Reaction inhibition by CytR.

Type:

transcription

Pathway Components:

rpoH - CytR -> rpoH_mRNA

Components:

Function	Name	Type
inhibitor	CytR	protein
reactant	rpoH	gene
product	rpoH_mRNA	RNA

Name:

tsx -> tsx_mRNA

Description:

Transcription of transcription unit tsx. Reaction inhibition by CytR.

Type:

transcription

Pathway Components:

tsx - CytR -> tsx_mRNA

Components:

Function	Name	Type
inhibitor	CytR	protein
reactant	tsx	gene
product	tsx_mRNA	RNA

Name:

udp -> udp_mRNA

Description:

Transcription of transcription unit udp. Reaction inhibition by CytR.

Type:

transcription

Pathway Components:

udp - CytR -> udp_mRNA

Components:

Function	Name	Type
inhibitor	CytR	protein
reactant	udp	gene
product	udp_mRNA	RNA

Name:

ycdZ -> ycdZ_mRNA

Description:

Transcription of transcription unit ycdZ. Reaction inhibition by CytR.

Type:

transcription

Pathway Components:

ycdZ - CytR -> ycdZ_mRNA

Components:

Function	Name	Type
inhibitor	CytR	protein
reactant	ycdZ	gene
product	ycdZ_mRNA	RNA

Name:

cytidine + CytR -> CytR-cytidine

Description:

Reaction transforming cytidine, CytR into CytR-cytidine

Type:

state transition

Pathway Components:

cytidine + CytR -> CytR-cytidine

Components:

Function	Name	Type
reactant	CytR	protein
product	CytR-cytidine	complex
reactant	cytidine	simple_molecule

Name:

nupG_mRNA -> NupG

Description:

Translation of NupG

Type:

translation

Pathway Components:

nupG_mRNA -> NupG

Components:

Function	Name	Type
product	NupG	protein
reactant	nupG_mRNA	RNA

Name:

nucleoside_Ext -> nucleoside

Description:

Transport of nucleoside_Ext through a bacterial membrane, leading to the presence of nucleoside inside the cell.

Type:

transport

Pathway Components:

nucleoside_Ext - NupG - Tsx -> nucleoside

Components:

Function	Name	Type
catalyzer	NupG	protein
catalyzer	Tsx	protein
product	nucleoside	simple_molecule
reactant	nucleoside_Ext	simple_molecule

Name:

uridine_Ext -> uridine

Description:

Transport of uridine_Ext through a bacterial membrane, leading to the presence of uridine inside the cell.

Type:

transport

Pathway Components:

uridine_Ext - NupC - NupG -> uridine

Components:

Function	Name	Type
catalyzer	NupC	protein
catalyzer	NupG	protein
product	uridine	simple_molecule
reactant	uridine_Ext	simple_molecule

Name:

thymidine_Ext -> thymidine

Description:

Transport of thymidine_Ext through a bacterial membrane, leading to the presence of thymidine inside the cell.

Type:

transport

Pathway Components:

thymidine_Ext - NupC - NupG -> thymidine

Components:

Function	Name	Type
catalyzer	NupC	protein
catalyzer	NupG	protein
product	thymidine	simple_molecule
reactant	thymidine_Ext	simple_molecule

Name:

inosine_Ext -> inosine

Description:

Transport of inosine_Ext through a bacterial membrane, leading to the presence of inosine inside the cell.

Type:

transport

Pathway Components:

inosine_Ext - NupC - NupG -> inosine

Components:

Function	Name	Type
catalyzer	NupC	protein
catalyzer	NupG	protein
product	inosine	simple_molecule
reactant	inosine_Ext	simple_molecule

Name:

deoxyuridine_Ext -> deoxyuridine

Description:

Transport of deoxyuridine_Ext through a bacterial membrane, leading to the presence of deoxyuridine inside the cell.

Type:

transport

Pathway Components:

deoxyuridine_Ext - NupC - NupG -> deoxyuridine

Components:

Function	Name	Type
catalyzer	NupC	protein
catalyzer	NupG	protein
product	deoxyuridine	simple_molecule
reactant	deoxyuridine_Ext	simple_molecule

Name:

deoxyinosine_Ext -> deoxyinosine

Description:

Transport of deoxyinosine_Ext through a bacterial membrane, leading to the presence of deoxyinosine inside the cell.

Type:

transport

Pathway Components:

deoxyinosine_Ext - NupC - NupG -> deoxyinosine

Components:

Function	Name	Type
catalyzer	NupC	protein
catalyzer	NupG	protein
product	deoxyinosine	simple_molecule
reactant	deoxyinosine_Ext	simple_molecule

Name:

d-cytidine_Ext -> d-cytidine

Description:

Transport of d-cytidine_Ext through a bacterial membrane, leading to the presence of d-cytidine inside the cell.

Type:

transport

Pathway Components:

d-cytidine_Ext - NupC - NupG -> d-cytidine

Components:

Function	Name	Type
catalyzer	NupC	protein
catalyzer	NupG	protein
product	d-cytidine	simple_molecule
reactant	d-cytidine_Ext	simple_molecule

Name:

deoxyadenosine_Ext -> deoxyadenosine

Description:

Transport of deoxyadenosine_Ext through a bacterial membrane, leading to the presence of deoxyadenosine inside the cell.

Type:

transport

Pathway Components:

deoxyadenosine_Ext - NupC - NupG -> deoxyadenosine

Components:

Function	Name	Type
catalyzer	NupC	protein
catalyzer	NupG	protein
product	deoxyadenosine	simple_molecule
reactant	deoxyadenosine_Ext	simple_molecule

Name:

cytidine_Ext -> cytidine

Description:

Transport of cytidine_Ext through a bacterial membrane, leading to the presence of cytidine inside the cell.

Type:

transport

Pathway Components:

cytidine_Ext - NupC - NupG -> cytidine

Components:

Function	Name	Type
catalyzer	NupC	protein
catalyzer	NupG	protein
product	cytidine	simple_molecule
reactant	cytidine_Ext	simple_molecule

Name:

adenosine_Ext -> adenosine

Description:

Transport of adenosine_Ext through a bacterial membrane, leading to the presence of adenosine inside the cell.

Type:

transport

Pathway Components:

adenosine_Ext - NupC - NupG -> adenosine

Components:

Function	Name	Type
catalyzer	NupC	protein
catalyzer	NupG	protein
product	adenosine	simple_molecule
reactant	adenosine_Ext	simple_molecule

Name:

xanthosine_Ext -> xanthosine

Description:

Transport of xanthosine_Ext through a bacterial membrane, leading to the presence of xanthosine inside the cell.

Type:

transport

Pathway Components:

xanthosine_Ext - NupG -> xanthosine

Components:

Function	Name	Type
catalyzer	NupG	protein
product	xanthosine	simple_molecule
reactant	xanthosine_Ext	simple_molecule

Name:

tsx_mRNA -> Tsx

Description:

Translation of Tsx

Type:

translation

Pathway Components:

tsx_mRNA -> Tsx

Components:

Function	Name	Type
product	Tsx	protein
reactant	tsx_mRNA	RNA

Name:

deoCABD_mRNA -> DeoC

Description:

Translation of DeoC

Type:

translation

Pathway Components:

deoCABD_mRNA -> DeoC

Components:

Function	Name	Type
product	DeoC	protein
reactant	deoCABD_mRNA	RNA

Name:

2-deoxy-D-ribose 5-phosphate -> glyceraldehyde-P + ethanal

Description:

Reaction transforming 2-deoxy-D-ribose 5-phosphate into glyceraldehyde-P, ethanal

Type:

state transition

Pathway Components:

2-deoxy-D-ribose 5-phosphate - DeoC -> glyceraldehyde-P + ethanal

Components:

Function	Name	Type
reactant	2-deoxy-D-ribose 5-phosphate	simple_molecule
catalyzer	DeoC	protein
product	ethanal	simple_molecule
product	glyceraldehyde-P	simple_molecule

Name:

deoCABD_mRNA -> DeoA

Description:

Translation of DeoA

Type:

translation

Pathway Components:

deoCABD_mRNA -> DeoA

Components:

Function	Name	Type
product	DeoA	protein
reactant	deoCABD_mRNA	RNA

Name:

thymidine + phosphate -> deoxy-D-ribose 1-phosphate + thymine

Description:

Reaction transforming thymidine, phosphate into deoxy-D-ribose 1-phosphate, thymine

Type:

state transition

Pathway Components:

thymidine + phosphate - DeoA - ribose-1-phosphate - thymine -> deoxy-D-ribose 1-phosphate + thymine

Components:

Function	Name	Type
catalyzer	DeoA	protein
product	deoxy-D-ribose 1-phosphate	simple_molecule
reactant	phosphate	simple_molecule
inhibitor	ribose-1-phosphate	simple_molecule
reactant	thymidine	simple_molecule
inhibitor	thymine	simple_molecule
product	thymine	simple_molecule

Name:

deoxyuridine + phosphate -> deoxy-D-ribose 1-phosphate + uracil

Description:

Reaction transforming deoxyuridine, phosphate into deoxy-D-ribose 1-phosphate, uracil

Type:

state transition

Pathway Components:

deoxyuridine + phosphate - DeoA -> deoxy-D-ribose 1-phosphate + uracil

Components:

Function	Name	Type
catalyzer	DeoA	protein
product	deoxy-D-ribose 1-phosphate	simple_molecule
reactant	deoxyuridine	simple_molecule
reactant	phosphate	simple_molecule
product	uracil	simple_molecule

Name:

deoCABD_mRNA -> DeoB

Description:

Translation of DeoB

Type:

translation

Pathway Components:

deoCABD_mRNA -> DeoB

Components:

Function	Name	Type
product	DeoB	protein
reactant	deoCABD_mRNA	RNA

Name:

deoxy-D-ribose 1-phosphate -> 2-deoxy-D-ribose 5-phosphate

Description:

Reaction transforming deoxy-D-ribose 1-phosphate into 2-deoxy-D-ribose 5-phosphate

Type:

state transition

Pathway Components:

deoxy-D-ribose 1-phosphate - DeoB -> 2-deoxy-D-ribose 5-phosphate

Components:

Function	Name	Type
product	2-deoxy-D-ribose 5-phosphate	simple_molecule
catalyzer	DeoB	protein
reactant	deoxy-D-ribose 1-phosphate	simple_molecule

Name:

ribose-1-phosphate -> ribose-5P

Description:

Reaction transforming ribose-1-phosphate into ribose-5P

Type:

state transition

Pathway Components:

ribose-1-phosphate - DeoB -> ribose-5P

Components:

Function	Name	Type
catalyzer	DeoB	protein
reactant	ribose-1-phosphate	simple_molecule
product	ribose-5P	simple_molecule

Name:

deoCABD_mRNA -> DeoD

Description:

Translation of DeoD

Type:

translation

Pathway Components:

deoCABD_mRNA -> DeoD

Components:

Function	Name	Type
product	DeoD	protein
reactant	deoCABD_mRNA	RNA

Name:

nebularine + phosphate -> ribose-1-phosphate + purine base

Description:

Reaction transforming nebularine, phosphate into ribose-1-phosphate, purine base

Type:

state transition

Pathway Components:

nebularine + phosphate - DeoD -> ribose-1-phosphate + purine base

Components:

Function	Name	Type
catalyzer	DeoD	protein
reactant	nebularine	simple_molecule
reactant	phosphate	simple_molecule
product	purine base	simple_molecule
product	ribose-1-phosphate	simple_molecule

Name:

phosphate + guanosine -> ribose-1-phosphate + guanine

Description:

Reaction transforming phosphate, guanosine into ribose-1-phosphate, guanine

Type:

state transition

Pathway Components:

phosphate + guanosine - DeoD -> ribose-1-phosphate + guanine

Components:

Function	Name	Type
catalyzer	DeoD	protein
product	guanine	simple_molecule
reactant	guanosine	simple_molecule
reactant	phosphate	simple_molecule
product	ribose-1-phosphate	simple_molecule

Name:

deoxyguanosine + phosphate -> deoxy-D-ribose 1-phosphate + guanine

Description:

Reaction transforming deoxyguanosine, phosphate into deoxy-D-ribose 1-phosphate, guanine

Type:

state transition

Pathway Components:

deoxyguanosine + phosphate - DeoD - adenosine -> deoxy-D-ribose 1-phosphate + guanine

Components:

Function	Name	Type
catalyzer	DeoD	protein
inhibitor	adenosine	simple_molecule
product	deoxy-D-ribose 1-phosphate	simple_molecule
reactant	deoxyguanosine	simple_molecule
product	guanine	simple_molecule
reactant	phosphate	simple_molecule

Name:

phosphate + inosine -> ribose-1-phosphate + hypoxanthine

Description:

Reaction transforming phosphate, inosine into ribose-1-phosphate, hypoxanthine

Type:

state transition

Pathway Components:

phosphate + inosine - DeoD -> ribose-1-phosphate + hypoxanthine

Components:

Function	Name	Type
catalyzer	DeoD	protein
product	hypoxanthine	simple_molecule
reactant	inosine	simple_molecule
reactant	phosphate	simple_molecule
product	ribose-1-phosphate	simple_molecule

Name:

deoxyinosine + phosphate -> deoxy-D-ribose 1-phosphate + hypoxanthine

Description:

Reaction transforming deoxyinosine, phosphate into deoxy-D-ribose 1-phosphate, hypoxanthine

Type:

state transition

Pathway Components:

deoxyinosine + phosphate - DeoD -> deoxy-D-ribose 1-phosphate + hypoxanthine

Components:

Function	Name	Type
catalyzer	DeoD	protein
product	deoxy-D-ribose 1-phosphate	simple_molecule
reactant	deoxyinosine	simple_molecule
product	hypoxanthine	simple_molecule
reactant	phosphate	simple_molecule

Name:

phosphate + adenosine -> ribose-1-phosphate + adenine

Description:

Reaction transforming phosphate, adenosine into ribose-1-phosphate, adenine

Type:

state transition

Pathway Components:

phosphate + adenosine - DeoD -> ribose-1-phosphate + adenine

Components:

Function	Name	Type
catalyzer	DeoD	protein
product	adenine	simple_molecule
reactant	adenosine	simple_molecule
reactant	phosphate	simple_molecule
product	ribose-1-phosphate	simple_molecule

Name:

deoxyadenosine + phosphate -> deoxy-D-ribose 1-phosphate + adenine

Description:

Reaction transforming deoxyadenosine, phosphate into deoxy-D-ribose 1-phosphate, adenine

Type:

state transition

Pathway Components:

deoxyadenosine + phosphate - DeoD -> deoxy-D-ribose 1-phosphate + adenine

Components:

Function	Name	Type
catalyzer	DeoD	protein
product	adenine	simple_molecule
product	deoxy-D-ribose 1-phosphate	simple_molecule
reactant	deoxyadenosine	simple_molecule
reactant	phosphate	simple_molecule

Name:

cdd_mRNA -> Cdd

Description:

Translation of Cdd

Type:

translation

Pathway Components:

cdd_mRNA -> Cdd

Components:

Function	Name	Type
product	Cdd	protein
reactant	cdd_mRNA	RNA

Name:

cytidine -> ammonium + uridine

Description:

Reaction transforming cytidine into ammonium, uridine

Type:

state transition

Pathway Components:

cytidine - Cdd -> ammonium + uridine

Components:

Function	Name	Type
catalyzer	Cdd	protein
product	ammonium	simple_molecule
reactant	cytidine	simple_molecule
product	uridine	simple_molecule

Name:

d-cytidine -> deoxyuridine + ammonium

Description:

Reaction transforming d-cytidine into deoxyuridine, ammonium

Type:

state transition

Pathway Components:

d-cytidine - Cdd -> deoxyuridine + ammonium

Components:

Function	Name	Type
catalyzer	Cdd	protein
product	ammonium	simple_molecule
reactant	d-cytidine	simple_molecule
product	deoxyuridine	simple_molecule

Name:

rpoH_mRNA -> RpoH

Description:

Translation of RpoH

Type:

translation

Pathway Components:

rpoH_mRNA -> RpoH

Components:

Function	Name	Type
product	RpoH	protein
reactant	rpoH_mRNA	RNA

Name:

RpoA + RpoB + RpoH + RpoC -> RpoB-RpoC-RpoA-RpoH

Description:

Reaction transforming RpoA, RpoB, RpoH, RpoC into RpoB-RpoC-RpoA-RpoH

Type:

state transition

Pathway Components:

RpoA + RpoB + RpoH + RpoC -> RpoB-RpoC-RpoA-RpoH

Components:

Function	Name	Type
reactant	RpoA	protein
reactant	RpoB	protein
product	RpoB-RpoC-RpoA-RpoH	complex
reactant	RpoC	protein
reactant	RpoH	protein

Name:

cytR_mRNA -> CytR

Description:

Translation of CytR

Type:

translation

Pathway Components:

cytR_mRNA -> CytR

Components:

Function	Name	Type
product	CytR	protein
reactant	cytR_mRNA	RNA

Name:

nupC_mRNA -> NupC

Description:

Translation of NupC

Type:

translation

Pathway Components:

nupC_mRNA -> NupC

Components:

Function	Name	Type
product	NupC	protein
reactant	nupC_mRNA	RNA

Name:

udp_mRNA -> Udp

Description:

Translation of Udp

Type:

translation

Pathway Components:

udp_mRNA -> Udp

Components:

Function	Name	Type
product	Udp	protein
reactant	udp_mRNA	RNA

Name:

phosphate + uridine -> ribose-1-phosphate + uracil

Description:

Reaction transforming phosphate, uridine into ribose-1-phosphate, uracil

Type:

state transition

Pathway Components:

phosphate + uridine - Udp - ribose-1-phosphate - uracil -> ribose-1-phosphate + uracil

Components:

Function	Name	Type
catalyzer	Udp	protein
reactant	phosphate	simple_molecule
inhibitor	ribose-1-phosphate	simple_molecule
product	ribose-1-phosphate	simple_molecule
inhibitor	uracil	simple_molecule
product	uracil	simple_molecule
reactant	uridine	simple_molecule

Name:

ycdZ_mRNA -> YcdZ

Description:

Translation of YcdZ

Type:

translation

Pathway Components:

ycdZ_mRNA -> YcdZ

Components:

Function	Name	Type
product	YcdZ	protein
reactant	ycdZ_mRNA	RNA

Name:

ppiA_mRNA -> PpiA

Description:

Translation of PpiA

Type:

translation

Pathway Components:

ppiA_mRNA -> PpiA

Components:

Function	Name	Type
product	PpiA	protein
reactant	ppiA_mRNA	RNA

Name:

peptidylproline (ω = 180) -> peptidylproline (ω = 0)

Description:

Reaction transforming peptidylproline (ω = 180) into peptidylproline (ω = 0)

Type:

state transition

Pathway Components:

peptidylproline (ω = 180) - PpiA -> peptidylproline (ω = 0)

Components:

Function	Name	Type
catalyzer	PpiA	protein
product	peptidylproline (ω = 0)	simple_molecule
reactant	peptidylproline (ω = 180)	simple_molecule

Name:

xanthosine -> ribose-1-phosphate

Description:

Transformation of xanthosine into ribose-1-phosphate by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

xanthosine / XANTHOSINEPHOSPHORY-RXN / ribose-1-phosphate

Components:

Function	Name	Type
product	ribose-1-phosphate	simple_molecule
reactant	xanthosine	simple_molecule

Name:

adenosine -> inosine

Description:

Transformation of adenosine into inosine by one or more reactions not shown.

Type:

complementary pathway reaction

Pathway Components:

adenosine / ADENODEAMIN-RXN / inosine

Components:

Function	Name	Type
reactant	adenosine	simple_molecule
product	inosine	simple_molecule

Gensor Unit Map