RegulonDB RegulonDB

CytR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
Udp nupG_mRNA PpiA DeoD thymidine_Ext CytR deoxyadenosine_Ext 2-deoxy-D-ribose 5-phosphate deoxyinosine_Ext uridine rpoH phosphate nupC adenosine_Ext RpoA deoCABD xanthosine inosine DeoC ppiA_mRNA ammonium deoxyguanosine udp_mRNA YcdZ thymine RpoC DeoB guanosine cdd nupC_mRNA deoxyuridine deoxy-D-ribose 1-phosphate deoxyuridine_Ext thymidine nucleoside_Ext ethanal guanine cytR_mRNA rpoH_mRNA hypoxanthine cytidine uridine_Ext cytidine tsx ppiA d-cytidine cytR DeoA adenosine d-cytidine_Ext nebularine xanthosine_Ext CytR peptidylproline (omega = 0) cytidine_Ext deoCABD_mRNA ycdZ udp peptidylproline (omega = 180) purine base ribose-5P cdd_mRNA nucleoside NupC RpoB nupG adenine RpoB Tsx deoxyinosine NupG inosine_Ext Cdd uracil RpoC tsx_mRNA RpoH RpoH glyceraldehyde-P ribose-1-phosphate ycdZ_mRNA deoxyadenosine RpoA uridine uracil phosphate adenine ribose-1-phosphate guanine hypoxanthine phosphate phosphate


Gensor Unit       
Name: CytR
Description: Molecular biology level
Detailed: In the absence of cytidine CytR negatively regulates the expression of genes required for nucleoside transport and catabolic processes. Under this condition, CytR bind its target sites, preventing/avoiding/hindering its own expression and the expression of its regulated genes. In the presence of cytidine, CytR is modified to CytR-cytidine, unbinds its target sites, enabling the expression of its regulated genes, included its own expression.
Less detailed: In the absence of cytidine CytR negatively regulates the expression of genes needed for nucleoside transport and catabolic processes.

Physiology level
Detailed: The presence of cytidine induces the expression of the genes involved with the transport and catabolism of nucleosides. Under this condition, the genes necessary for the transport of uridine, inosine, 2'.deoxyuridine, etc. and their transformation to ribose, ammonia, acetaldehyde and glyceraldehyde-3-P, are expressed.
Less detailed: The presence of cytidine induces the expression of genes needful for the transport of nucleosides (e.g., uridine, inosine, 2'-deoxyuridine, etc.) and their transformation to ribose, ammonia, acetaldehyde, and glyceraldehyde-3-P.
Classification:
Groups: Posttranslational modification, protein turnover, chaperones
Transcription
Carbohydrate transport and metabolism
Cell wall/membrane/envelope biogenesis
Nucleotide transport and metabolism
Gene Ontology Terms (GO): biological_process GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process
GO:0006310 - DNA recombination
GO:0006352 - DNA-templated transcription, initiation
GO:0046050 - UMP catabolic process
GO:0044206 - UMP salvage
GO:0032238 - adenosine transport
Read more >
cellular_component GO:0009279 - cell outer membrane
GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
GO:0031421 - invertasome
GO:0016020 - membrane
Read more >
molecular_function GO:0004645 - 1,4-alpha-oligoglucan phosphorylase activity
GO:0005524 - ATP binding
GO:0003677 - DNA binding
GO:0003700 - DNA-binding transcription factor activity
GO:0000985 - bacterial-type RNA polymerase core promoter sequence-specific DNA binding
GO:0003824 - catalytic activity
GO:0004126 - cytidine deaminase activity
Read more >
Components:
  Function Name Type
  simple_molecule 2-deoxy-D-ribose 5-phosphate simple_molecule
  protein Cdd protein
  protein CytR protein
  complex CytR-cytidine complex
  protein DeoA protein
  protein DeoB protein
  protein DeoC protein
  protein DeoD protein
  protein NupC protein
  protein NupG protein
  protein PpiA protein
  protein RpoA protein
  protein RpoB protein
  complex RpoB-RpoC-RpoA-RpoH complex
  protein RpoC protein
  protein RpoH protein
  protein Tsx protein
  protein Udp protein
  protein YcdZ protein
  simple_molecule adenine simple_molecule
  simple_molecule adenosine simple_molecule
  simple_molecule adenosine_Ext simple_molecule
  simple_molecule ammonium simple_molecule
  gene cdd gene
  RNA cdd_mRNA RNA
  gene cytR gene
  RNA cytR_mRNA RNA
  simple_molecule cytidine simple_molecule
  simple_molecule cytidine_Ext simple_molecule
  simple_molecule d-cytidine simple_molecule
  simple_molecule d-cytidine_Ext simple_molecule
  gene deoCABD gene
  RNA deoCABD_mRNA RNA
  simple_molecule deoxy-D-ribose 1-phosphate simple_molecule
  simple_molecule deoxyadenosine simple_molecule
  simple_molecule deoxyadenosine_Ext simple_molecule
  simple_molecule deoxyguanosine simple_molecule
  simple_molecule deoxyinosine simple_molecule
  simple_molecule deoxyinosine_Ext simple_molecule
  simple_molecule deoxyuridine simple_molecule
  simple_molecule deoxyuridine_Ext simple_molecule
  simple_molecule ethanal simple_molecule
  simple_molecule glyceraldehyde-P simple_molecule
  simple_molecule guanine simple_molecule
  simple_molecule guanosine simple_molecule
  simple_molecule hypoxanthine simple_molecule
  simple_molecule inosine simple_molecule
  simple_molecule inosine_Ext simple_molecule
  simple_molecule nebularine simple_molecule
  simple_molecule nucleoside simple_molecule
  simple_molecule nucleoside_Ext simple_molecule
  gene nupC gene
  RNA nupC_mRNA RNA
  gene nupG gene
  RNA nupG_mRNA RNA
  simple_molecule peptidylproline (ω = 0) simple_molecule
  simple_molecule peptidylproline (ω = 180) simple_molecule
  simple_molecule phosphate simple_molecule
  gene ppiA gene
  RNA ppiA_mRNA RNA
  simple_molecule purine base simple_molecule
  simple_molecule ribose-1-phosphate simple_molecule
  simple_molecule ribose-5P simple_molecule
  gene rpoH gene
  RNA rpoH_mRNA RNA
  simple_molecule thymidine simple_molecule
  simple_molecule thymidine_Ext simple_molecule
  simple_molecule thymine simple_molecule
  gene tsx gene
  RNA tsx_mRNA RNA
  gene udp gene
  RNA udp_mRNA RNA
  simple_molecule uracil simple_molecule
  simple_molecule uridine simple_molecule
  simple_molecule uridine_Ext simple_molecule
  simple_molecule xanthosine simple_molecule
  simple_molecule xanthosine_Ext simple_molecule
  gene ycdZ gene
  RNA ycdZ_mRNA RNA


Reactions       
Showing 54 reactions
CytR cdd cdd_mRNA
Name: cdd -> cdd_mRNA
Description: Transcription of transcription unit cdd. Reaction inhibition by CytR.
Type: transcription
Pathway Components: cdd - CytR -> cdd_mRNA
Components:
Function Name Type
inhibitor CytR protein
reactant cdd gene
product cdd_mRNA RNA
CytR cytR cytR_mRNA
Name: cytR -> cytR_mRNA
Description: Transcription of transcription unit cytR. Reaction inhibition by CytR.
Type: transcription
Pathway Components: cytR - CytR -> cytR_mRNA
Components:
Function Name Type
inhibitor CytR protein
reactant cytR gene
product cytR_mRNA RNA
CytR deoCABD deoCABD_mRNA
Name: deoCABD -> deoCABD_mRNA
Description: Transcription of transcription unit deoCABD. Reaction inhibition by CytR.
Type: transcription
Pathway Components: deoCABD - CytR -> deoCABD_mRNA
Components:
Function Name Type
inhibitor CytR protein
reactant deoCABD gene
product deoCABD_mRNA RNA
CytR nupC nupC_mRNA
Name: nupC -> nupC_mRNA
Description: Transcription of transcription unit nupC. Reaction inhibition by CytR.
Type: transcription
Pathway Components: nupC - CytR -> nupC_mRNA
Components:
Function Name Type
inhibitor CytR protein
reactant nupC gene
product nupC_mRNA RNA
CytR nupG nupG_mRNA
Name: nupG -> nupG_mRNA
Description: Transcription of transcription unit nupG. Reaction inhibition by CytR.
Type: transcription
Pathway Components: nupG - CytR -> nupG_mRNA
Components:
Function Name Type
inhibitor CytR protein
reactant nupG gene
product nupG_mRNA RNA
CytR ppiA ppiA_mRNA
Name: ppiA -> ppiA_mRNA
Description: Transcription of transcription unit ppiA. Reaction inhibition by CytR.
Type: transcription
Pathway Components: ppiA - CytR -> ppiA_mRNA
Components:
Function Name Type
inhibitor CytR protein
reactant ppiA gene
product ppiA_mRNA RNA
CytR rpoH rpoH_mRNA
Name: rpoH -> rpoH_mRNA
Description: Transcription of transcription unit rpoH. Reaction inhibition by CytR.
Type: transcription
Pathway Components: rpoH - CytR -> rpoH_mRNA
Components:
Function Name Type
inhibitor CytR protein
reactant rpoH gene
product rpoH_mRNA RNA
CytR tsx tsx_mRNA
Name: tsx -> tsx_mRNA
Description: Transcription of transcription unit tsx. Reaction inhibition by CytR.
Type: transcription
Pathway Components: tsx - CytR -> tsx_mRNA
Components:
Function Name Type
inhibitor CytR protein
reactant tsx gene
product tsx_mRNA RNA
CytR udp udp_mRNA
Name: udp -> udp_mRNA
Description: Transcription of transcription unit udp. Reaction inhibition by CytR.
Type: transcription
Pathway Components: udp - CytR -> udp_mRNA
Components:
Function Name Type
inhibitor CytR protein
reactant udp gene
product udp_mRNA RNA
CytR ycdZ ycdZ_mRNA
Name: ycdZ -> ycdZ_mRNA
Description: Transcription of transcription unit ycdZ. Reaction inhibition by CytR.
Type: transcription
Pathway Components: ycdZ - CytR -> ycdZ_mRNA
Components:
Function Name Type
inhibitor CytR protein
reactant ycdZ gene
product ycdZ_mRNA RNA
cytidine + CytR CytR-cytidine
Name: cytidine + CytR -> CytR-cytidine
Description: Reaction transforming cytidine, CytR into CytR-cytidine
Type: state transition
Pathway Components: cytidine + CytR -> CytR-cytidine
Components:
Function Name Type
reactant CytR protein
product CytR-cytidine complex
reactant cytidine simple_molecule
nupG_mRNA NupG
Name: nupG_mRNA -> NupG
Description: Translation of NupG
Type: translation
Pathway Components: nupG_mRNA -> NupG
Components:
Function Name Type
product NupG protein
reactant nupG_mRNA RNA
NupG Tsx nucleoside_Ext nucleoside
Name: nucleoside_Ext -> nucleoside
Description: Transport of nucleoside_Ext through a bacterial membrane, leading to the presence of nucleoside inside the cell.
Type: transport
Pathway Components: nucleoside_Ext - NupG - Tsx -> nucleoside
Components:
Function Name Type
catalyzer NupG protein
catalyzer Tsx protein
product nucleoside simple_molecule
reactant nucleoside_Ext simple_molecule
NupC NupG uridine_Ext uridine
Name: uridine_Ext -> uridine
Description: Transport of uridine_Ext through a bacterial membrane, leading to the presence of uridine inside the cell.
Type: transport
Pathway Components: uridine_Ext - NupC - NupG -> uridine
Components:
Function Name Type
catalyzer NupC protein
catalyzer NupG protein
product uridine simple_molecule
reactant uridine_Ext simple_molecule
NupC NupG thymidine_Ext thymidine
Name: thymidine_Ext -> thymidine
Description: Transport of thymidine_Ext through a bacterial membrane, leading to the presence of thymidine inside the cell.
Type: transport
Pathway Components: thymidine_Ext - NupC - NupG -> thymidine
Components:
Function Name Type
catalyzer NupC protein
catalyzer NupG protein
product thymidine simple_molecule
reactant thymidine_Ext simple_molecule
NupC NupG inosine_Ext inosine
Name: inosine_Ext -> inosine
Description: Transport of inosine_Ext through a bacterial membrane, leading to the presence of inosine inside the cell.
Type: transport
Pathway Components: inosine_Ext - NupC - NupG -> inosine
Components:
Function Name Type
catalyzer NupC protein
catalyzer NupG protein
product inosine simple_molecule
reactant inosine_Ext simple_molecule
NupC NupG deoxyuridine_Ext deoxyuridine
Name: deoxyuridine_Ext -> deoxyuridine
Description: Transport of deoxyuridine_Ext through a bacterial membrane, leading to the presence of deoxyuridine inside the cell.
Type: transport
Pathway Components: deoxyuridine_Ext - NupC - NupG -> deoxyuridine
Components:
Function Name Type
catalyzer NupC protein
catalyzer NupG protein
product deoxyuridine simple_molecule
reactant deoxyuridine_Ext simple_molecule
NupC NupG deoxyinosine_Ext deoxyinosine
Name: deoxyinosine_Ext -> deoxyinosine
Description: Transport of deoxyinosine_Ext through a bacterial membrane, leading to the presence of deoxyinosine inside the cell.
Type: transport
Pathway Components: deoxyinosine_Ext - NupC - NupG -> deoxyinosine
Components:
Function Name Type
catalyzer NupC protein
catalyzer NupG protein
product deoxyinosine simple_molecule
reactant deoxyinosine_Ext simple_molecule
NupC NupG d-cytidine_Ext d-cytidine
Name: d-cytidine_Ext -> d-cytidine
Description: Transport of d-cytidine_Ext through a bacterial membrane, leading to the presence of d-cytidine inside the cell.
Type: transport
Pathway Components: d-cytidine_Ext - NupC - NupG -> d-cytidine
Components:
Function Name Type
catalyzer NupC protein
catalyzer NupG protein
product d-cytidine simple_molecule
reactant d-cytidine_Ext simple_molecule
NupC NupG deoxyadenosine_Ext deoxyadenosine
Name: deoxyadenosine_Ext -> deoxyadenosine
Description: Transport of deoxyadenosine_Ext through a bacterial membrane, leading to the presence of deoxyadenosine inside the cell.
Type: transport
Pathway Components: deoxyadenosine_Ext - NupC - NupG -> deoxyadenosine
Components:
Function Name Type
catalyzer NupC protein
catalyzer NupG protein
product deoxyadenosine simple_molecule
reactant deoxyadenosine_Ext simple_molecule
NupC NupG cytidine_Ext cytidine
Name: cytidine_Ext -> cytidine
Description: Transport of cytidine_Ext through a bacterial membrane, leading to the presence of cytidine inside the cell.
Type: transport
Pathway Components: cytidine_Ext - NupC - NupG -> cytidine
Components:
Function Name Type
catalyzer NupC protein
catalyzer NupG protein
product cytidine simple_molecule
reactant cytidine_Ext simple_molecule
NupC NupG adenosine_Ext adenosine
Name: adenosine_Ext -> adenosine
Description: Transport of adenosine_Ext through a bacterial membrane, leading to the presence of adenosine inside the cell.
Type: transport
Pathway Components: adenosine_Ext - NupC - NupG -> adenosine
Components:
Function Name Type
catalyzer NupC protein
catalyzer NupG protein
product adenosine simple_molecule
reactant adenosine_Ext simple_molecule
NupG xanthosine_Ext xanthosine
Name: xanthosine_Ext -> xanthosine
Description: Transport of xanthosine_Ext through a bacterial membrane, leading to the presence of xanthosine inside the cell.
Type: transport
Pathway Components: xanthosine_Ext - NupG -> xanthosine
Components:
Function Name Type
catalyzer NupG protein
product xanthosine simple_molecule
reactant xanthosine_Ext simple_molecule
tsx_mRNA Tsx
Name: tsx_mRNA -> Tsx
Description: Translation of Tsx
Type: translation
Pathway Components: tsx_mRNA -> Tsx
Components:
Function Name Type
product Tsx protein
reactant tsx_mRNA RNA
deoCABD_mRNA DeoC
Name: deoCABD_mRNA -> DeoC
Description: Translation of DeoC
Type: translation
Pathway Components: deoCABD_mRNA -> DeoC
Components:
Function Name Type
product DeoC protein
reactant deoCABD_mRNA RNA
DeoC 2-deoxy-D-ribose 5-phosphate glyceraldehyde-P + ethanal
Name: 2-deoxy-D-ribose 5-phosphate -> glyceraldehyde-P + ethanal
Description: Reaction transforming 2-deoxy-D-ribose 5-phosphate into glyceraldehyde-P, ethanal
Type: state transition
Pathway Components: 2-deoxy-D-ribose 5-phosphate - DeoC -> glyceraldehyde-P + ethanal
Components:
Function Name Type
reactant 2-deoxy-D-ribose 5-phosphate simple_molecule
catalyzer DeoC protein
product ethanal simple_molecule
product glyceraldehyde-P simple_molecule
deoCABD_mRNA DeoA
Name: deoCABD_mRNA -> DeoA
Description: Translation of DeoA
Type: translation
Pathway Components: deoCABD_mRNA -> DeoA
Components:
Function Name Type
product DeoA protein
reactant deoCABD_mRNA RNA
DeoA ribose-1-phosphate thymine thymidine + phosphate deoxy-D-ribose 1-phosphate + thymine
Name: thymidine + phosphate -> deoxy-D-ribose 1-phosphate + thymine
Description: Reaction transforming thymidine, phosphate into deoxy-D-ribose 1-phosphate, thymine
Type: state transition
Pathway Components: thymidine + phosphate - DeoA - ribose-1-phosphate - thymine -> deoxy-D-ribose 1-phosphate + thymine
Components:
Function Name Type
catalyzer DeoA protein
product deoxy-D-ribose 1-phosphate simple_molecule
reactant phosphate simple_molecule
inhibitor ribose-1-phosphate simple_molecule
reactant thymidine simple_molecule
inhibitor thymine simple_molecule
product thymine simple_molecule
DeoA deoxyuridine + phosphate deoxy-D-ribose 1-phosphate + uracil
Name: deoxyuridine + phosphate -> deoxy-D-ribose 1-phosphate + uracil
Description: Reaction transforming deoxyuridine, phosphate into deoxy-D-ribose 1-phosphate, uracil
Type: state transition
Pathway Components: deoxyuridine + phosphate - DeoA -> deoxy-D-ribose 1-phosphate + uracil
Components:
Function Name Type
catalyzer DeoA protein
product deoxy-D-ribose 1-phosphate simple_molecule
reactant deoxyuridine simple_molecule
reactant phosphate simple_molecule
product uracil simple_molecule
deoCABD_mRNA DeoB
Name: deoCABD_mRNA -> DeoB
Description: Translation of DeoB
Type: translation
Pathway Components: deoCABD_mRNA -> DeoB
Components:
Function Name Type
product DeoB protein
reactant deoCABD_mRNA RNA
DeoB deoxy-D-ribose 1-phosphate 2-deoxy-D-ribose 5-phosphate
Name: deoxy-D-ribose 1-phosphate -> 2-deoxy-D-ribose 5-phosphate
Description: Reaction transforming deoxy-D-ribose 1-phosphate into 2-deoxy-D-ribose 5-phosphate
Type: state transition
Pathway Components: deoxy-D-ribose 1-phosphate - DeoB -> 2-deoxy-D-ribose 5-phosphate
Components:
Function Name Type
product 2-deoxy-D-ribose 5-phosphate simple_molecule
catalyzer DeoB protein
reactant deoxy-D-ribose 1-phosphate simple_molecule
DeoB ribose-1-phosphate ribose-5P
Name: ribose-1-phosphate -> ribose-5P
Description: Reaction transforming ribose-1-phosphate into ribose-5P
Type: state transition
Pathway Components: ribose-1-phosphate - DeoB -> ribose-5P
Components:
Function Name Type
catalyzer DeoB protein
reactant ribose-1-phosphate simple_molecule
product ribose-5P simple_molecule
deoCABD_mRNA DeoD
Name: deoCABD_mRNA -> DeoD
Description: Translation of DeoD
Type: translation
Pathway Components: deoCABD_mRNA -> DeoD
Components:
Function Name Type
product DeoD protein
reactant deoCABD_mRNA RNA
DeoD nebularine + phosphate ribose-1-phosphate + purine base
Name: nebularine + phosphate -> ribose-1-phosphate + purine base
Description: Reaction transforming nebularine, phosphate into ribose-1-phosphate, purine base
Type: state transition
Pathway Components: nebularine + phosphate - DeoD -> ribose-1-phosphate + purine base
Components:
Function Name Type
catalyzer DeoD protein
reactant nebularine simple_molecule
reactant phosphate simple_molecule
product purine base simple_molecule
product ribose-1-phosphate simple_molecule
DeoD phosphate + guanosine ribose-1-phosphate + guanine
Name: phosphate + guanosine -> ribose-1-phosphate + guanine
Description: Reaction transforming phosphate, guanosine into ribose-1-phosphate, guanine
Type: state transition
Pathway Components: phosphate + guanosine - DeoD -> ribose-1-phosphate + guanine
Components:
Function Name Type
catalyzer DeoD protein
product guanine simple_molecule
reactant guanosine simple_molecule
reactant phosphate simple_molecule
product ribose-1-phosphate simple_molecule
DeoD adenosine deoxyguanosine + phosphate deoxy-D-ribose 1-phosphate + guanine
Name: deoxyguanosine + phosphate -> deoxy-D-ribose 1-phosphate + guanine
Description: Reaction transforming deoxyguanosine, phosphate into deoxy-D-ribose 1-phosphate, guanine
Type: state transition
Pathway Components: deoxyguanosine + phosphate - DeoD - adenosine -> deoxy-D-ribose 1-phosphate + guanine
Components:
Function Name Type
catalyzer DeoD protein
inhibitor adenosine simple_molecule
product deoxy-D-ribose 1-phosphate simple_molecule
reactant deoxyguanosine simple_molecule
product guanine simple_molecule
reactant phosphate simple_molecule
DeoD phosphate + inosine ribose-1-phosphate + hypoxanthine
Name: phosphate + inosine -> ribose-1-phosphate + hypoxanthine
Description: Reaction transforming phosphate, inosine into ribose-1-phosphate, hypoxanthine
Type: state transition
Pathway Components: phosphate + inosine - DeoD -> ribose-1-phosphate + hypoxanthine
Components:
Function Name Type
catalyzer DeoD protein
product hypoxanthine simple_molecule
reactant inosine simple_molecule
reactant phosphate simple_molecule
product ribose-1-phosphate simple_molecule
DeoD deoxyinosine + phosphate deoxy-D-ribose 1-phosphate + hypoxanthine
Name: deoxyinosine + phosphate -> deoxy-D-ribose 1-phosphate + hypoxanthine
Description: Reaction transforming deoxyinosine, phosphate into deoxy-D-ribose 1-phosphate, hypoxanthine
Type: state transition
Pathway Components: deoxyinosine + phosphate - DeoD -> deoxy-D-ribose 1-phosphate + hypoxanthine
Components:
Function Name Type
catalyzer DeoD protein
product deoxy-D-ribose 1-phosphate simple_molecule
reactant deoxyinosine simple_molecule
product hypoxanthine simple_molecule
reactant phosphate simple_molecule
DeoD phosphate + adenosine ribose-1-phosphate + adenine
Name: phosphate + adenosine -> ribose-1-phosphate + adenine
Description: Reaction transforming phosphate, adenosine into ribose-1-phosphate, adenine
Type: state transition
Pathway Components: phosphate + adenosine - DeoD -> ribose-1-phosphate + adenine
Components:
Function Name Type
catalyzer DeoD protein
product adenine simple_molecule
reactant adenosine simple_molecule
reactant phosphate simple_molecule
product ribose-1-phosphate simple_molecule
DeoD deoxyadenosine + phosphate deoxy-D-ribose 1-phosphate + adenine
Name: deoxyadenosine + phosphate -> deoxy-D-ribose 1-phosphate + adenine
Description: Reaction transforming deoxyadenosine, phosphate into deoxy-D-ribose 1-phosphate, adenine
Type: state transition
Pathway Components: deoxyadenosine + phosphate - DeoD -> deoxy-D-ribose 1-phosphate + adenine
Components:
Function Name Type
catalyzer DeoD protein
product adenine simple_molecule
product deoxy-D-ribose 1-phosphate simple_molecule
reactant deoxyadenosine simple_molecule
reactant phosphate simple_molecule
cdd_mRNA Cdd
Name: cdd_mRNA -> Cdd
Description: Translation of Cdd
Type: translation
Pathway Components: cdd_mRNA -> Cdd
Components:
Function Name Type
product Cdd protein
reactant cdd_mRNA RNA
Cdd cytidine ammonium + uridine
Name: cytidine -> ammonium + uridine
Description: Reaction transforming cytidine into ammonium, uridine
Type: state transition
Pathway Components: cytidine - Cdd -> ammonium + uridine
Components:
Function Name Type
catalyzer Cdd protein
product ammonium simple_molecule
reactant cytidine simple_molecule
product uridine simple_molecule
Cdd d-cytidine deoxyuridine + ammonium
Name: d-cytidine -> deoxyuridine + ammonium
Description: Reaction transforming d-cytidine into deoxyuridine, ammonium
Type: state transition
Pathway Components: d-cytidine - Cdd -> deoxyuridine + ammonium
Components:
Function Name Type
catalyzer Cdd protein
product ammonium simple_molecule
reactant d-cytidine simple_molecule
product deoxyuridine simple_molecule
rpoH_mRNA RpoH
Name: rpoH_mRNA -> RpoH
Description: Translation of RpoH
Type: translation
Pathway Components: rpoH_mRNA -> RpoH
Components:
Function Name Type
product RpoH protein
reactant rpoH_mRNA RNA
RpoA + RpoB + RpoH + RpoC RpoB-RpoC-RpoA-RpoH
Name: RpoA + RpoB + RpoH + RpoC -> RpoB-RpoC-RpoA-RpoH
Description: Reaction transforming RpoA, RpoB, RpoH, RpoC into RpoB-RpoC-RpoA-RpoH
Type: state transition
Pathway Components: RpoA + RpoB + RpoH + RpoC -> RpoB-RpoC-RpoA-RpoH
Components:
Function Name Type
reactant RpoA protein
reactant RpoB protein
product RpoB-RpoC-RpoA-RpoH complex
reactant RpoC protein
reactant RpoH protein
cytR_mRNA CytR
Name: cytR_mRNA -> CytR
Description: Translation of CytR
Type: translation
Pathway Components: cytR_mRNA -> CytR
Components:
Function Name Type
product CytR protein
reactant cytR_mRNA RNA
nupC_mRNA NupC
Name: nupC_mRNA -> NupC
Description: Translation of NupC
Type: translation
Pathway Components: nupC_mRNA -> NupC
Components:
Function Name Type
product NupC protein
reactant nupC_mRNA RNA
udp_mRNA Udp
Name: udp_mRNA -> Udp
Description: Translation of Udp
Type: translation
Pathway Components: udp_mRNA -> Udp
Components:
Function Name Type
product Udp protein
reactant udp_mRNA RNA
Udp ribose-1-phosphate uracil phosphate + uridine ribose-1-phosphate + uracil
Name: phosphate + uridine -> ribose-1-phosphate + uracil
Description: Reaction transforming phosphate, uridine into ribose-1-phosphate, uracil
Type: state transition
Pathway Components: phosphate + uridine - Udp - ribose-1-phosphate - uracil -> ribose-1-phosphate + uracil
Components:
Function Name Type
catalyzer Udp protein
reactant phosphate simple_molecule
inhibitor ribose-1-phosphate simple_molecule
product ribose-1-phosphate simple_molecule
inhibitor uracil simple_molecule
product uracil simple_molecule
reactant uridine simple_molecule
ycdZ_mRNA YcdZ
Name: ycdZ_mRNA -> YcdZ
Description: Translation of YcdZ
Type: translation
Pathway Components: ycdZ_mRNA -> YcdZ
Components:
Function Name Type
product YcdZ protein
reactant ycdZ_mRNA RNA
ppiA_mRNA PpiA
Name: ppiA_mRNA -> PpiA
Description: Translation of PpiA
Type: translation
Pathway Components: ppiA_mRNA -> PpiA
Components:
Function Name Type
product PpiA protein
reactant ppiA_mRNA RNA
PpiA peptidylproline (ω = 180) peptidylproline (ω = 0)
Name: peptidylproline (ω = 180) -> peptidylproline (ω = 0)
Description: Reaction transforming peptidylproline (ω = 180) into peptidylproline (ω = 0)
Type: state transition
Pathway Components: peptidylproline (ω = 180) - PpiA -> peptidylproline (ω = 0)
Components:
Function Name Type
catalyzer PpiA protein
product peptidylproline (ω = 0) simple_molecule
reactant peptidylproline (ω = 180) simple_molecule
xanthosine ribose-1-phosphate
Name: xanthosine -> ribose-1-phosphate
Description: Transformation of xanthosine into ribose-1-phosphate by one or more reactions not shown.
Type: complementary pathway reaction
Pathway Components: xanthosine / XANTHOSINEPHOSPHORY-RXN / ribose-1-phosphate
Components:
Function Name Type
product ribose-1-phosphate simple_molecule
reactant xanthosine simple_molecule
adenosine inosine
Name: adenosine -> inosine
Description: Transformation of adenosine into inosine by one or more reactions not shown.
Type: complementary pathway reaction
Pathway Components: adenosine / ADENODEAMIN-RXN / inosine
Components:
Function Name Type
reactant adenosine simple_molecule
product inosine simple_molecule



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