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Dan Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          


Gensor Unit       
Name: Dan
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0016020 - membrane
GO:0016829 - lyase activity
GO:0055085 - transmembrane transport
GO:0045893 - positive regulation of transcription, DNA-templated
GO:0003677 - DNA binding
GO:0015297 - antiporter activity
GO:0008730 - L(+)-tartrate dehydratase activity
GO:0005886 - plasma membrane
GO:0016836 - hydro-lyase activity
GO:0046872 - metal ion binding
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Components:
Function Name Type
RNA ttdR_mRNA RNA


Reactions       
Showing 11 reactions
Dan + tartrate Dan-tartrate
Name: Dan + tartrate -> Dan-tartrate
Description: Reaction transforming Dan, tartrate into Dan-tartrate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product Dan-tartrate complex nd nd
reactant tartrate simple molecule nd nd
reactant Dan protein nd nd
ttdABT ttdABT_mRNA
Name: ttdABT -> ttdABT_mRNA
Description: Transcription of transcription unit ttdABT; reaction activation by Dan-tartrate.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product ttdABT_mRNA RNA nd nd
reactant ttdABT gene nd nd
ttdR ttdR_mRNA
Name: ttdR -> ttdR_mRNA
Description: Transcription of transcription unit ttdR; reaction activation by Dan-tartrate.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product ttdR_mRNA RNA nd nd
reactant ttdR gene nd nd
ttdABT_mRNA TtdA
Name: ttdABT_mRNA -> TtdA
Description: Translation of TtdA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant ttdABT_mRNA RNA nd nd
product TtdA protein nd nd
TtdA + TtdB TtdA-TtdB
Name: TtdA + TtdB -> TtdA-TtdB
Description: Reaction transforming TtdA, TtdB into TtdA-TtdB
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product TtdA-TtdB complex nd nd
reactant TtdB protein nd nd
reactant TtdA protein nd nd
tartrate oxalacetate
Name: tartrate -> oxalacetate
Description: Reaction transforming tartrate into oxalacetate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant tartrate simple molecule nd nd
product oxalacetate simple molecule nd nd
ttdABT_mRNA TtdT
Name: ttdABT_mRNA -> TtdT
Description: Translation of TtdT
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant ttdABT_mRNA RNA nd nd
product TtdT protein nd nd
tartrate_Ext + suc_Ext tartrate + suc
Name: tartrate_Ext + suc_Ext -> tartrate + suc
Description: Transport of tartrate_Ext, suc_Ext through a bacterial membrane, leading to the presence of tartrate, suc inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant tartrate_Ext simple molecule nd nd
product suc simple molecule nd nd
reactant suc_Ext simple molecule nd nd
product tartrate simple molecule nd nd
ttdABT_mRNA TtdB
Name: ttdABT_mRNA -> TtdB
Description: Translation of TtdB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant ttdABT_mRNA RNA nd nd
product TtdB protein nd nd
ttdR_mRNA Dan
Name: ttdR_mRNA -> Dan
Description: Translation of Dan
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant ttdR_mRNA RNA nd nd
product Dan protein nd nd
ttdR_mRNA TtdR
Name: ttdR_mRNA -> TtdR
Description: Translation of TtdR
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant ttdR_mRNA RNA nd nd
product TtdR protein nd nd



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