RegulonDB RegulonDB

Dan Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
Dan tartrate tartrate_Ext TtdA TtdB TtdR TtdT oxalacetate succinate succinate_Ext ttdABT ttdABT_mRNA ttdR ttdR_mRNA Dan tartrate TtdA TtdB


Gensor Unit       
Name: Dan
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0042710 - biofilm formation
GO:0045893 - positive regulation of transcription, DNA-templated
GO:0009408 - response to heat
GO:1901275 - tartrate metabolic process
GO:0006351 - transcription, DNA-templated
GO:0055085 - transmembrane transport
Read more >
cellular_component GO:0005886 - plasma membrane
molecular_function GO:0003700 - DNA binding transcription factor activity
GO:0015297 - antiporter activity
GO:0005515 - protein binding
GO:0043565 - sequence-specific DNA binding
GO:0005215 - transporter activity
Components: Show/Hide Components Table (15 more...)
Function Name Type
protein Dan protein
protein TtdA protein
complex TtdA-TtdB complex
protein TtdB protein
protein TtdR protein
protein TtdT protein
simple_molecule oxalacetate simple_molecule
simple_molecule succinate simple_molecule
simple_molecule succinate_Ext simple_molecule
simple_molecule tartrate simple_molecule
simple_molecule tartrate_Ext simple_molecule
gene ttdABT gene
RNA ttdABT_mRNA RNA
gene ttdR gene
RNA ttdR_mRNA RNA


Reactions       
Showing 9 reactions
Dan ttdABT ttdABT_mRNA
Name: ttdABT -> ttdABT_mRNA
Description: Transcription of transcription unit ttdABT. Reaction activation by Dan.
Type: transcription
Pathway Components: ttdABT - Dan -> ttdABT_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Dan protein nd nd
reactant ttdABT gene nd nd
product ttdABT_mRNA RNA nd nd
Dan ttdR ttdR_mRNA
Name: ttdR -> ttdR_mRNA
Description: Transcription of transcription unit ttdR. Reaction activation by Dan.
Type: transcription
Pathway Components: ttdR - Dan -> ttdR_mRNA
Components:
Function Name Type Evidence Reference(s)
activator Dan protein nd nd
reactant ttdR gene nd nd
product ttdR_mRNA RNA nd nd
ttdABT_mRNA TtdA
Name: ttdABT_mRNA -> TtdA
Description: Translation of TtdA
Type: translation
Pathway Components: ttdABT_mRNA -> TtdA
Components:
Function Name Type Evidence Reference(s)
product TtdA protein nd nd
reactant ttdABT_mRNA RNA nd nd
TtdB + TtdA TtdA-TtdB
Name: TtdB + TtdA -> TtdA-TtdB
Description: Reaction transforming TtdB, TtdA into TtdA-TtdB
Type: state transition
Pathway Components: TtdB + TtdA -> TtdA-TtdB
Components:
Function Name Type Evidence Reference(s)
reactant TtdA protein nd nd
product TtdA-TtdB complex nd nd
reactant TtdB protein nd nd
TtdA-TtdB tartrate oxalacetate
Name: tartrate -> oxalacetate
Description: Reaction transforming tartrate into oxalacetate
Type: state transition
Pathway Components: tartrate - TtdA-TtdB -> oxalacetate
Components:
Function Name Type Evidence Reference(s)
catalyzer TtdA-TtdB complex nd nd
product oxalacetate simple_molecule nd nd
reactant tartrate simple_molecule nd nd
ttdABT_mRNA TtdB
Name: ttdABT_mRNA -> TtdB
Description: Translation of TtdB
Type: translation
Pathway Components: ttdABT_mRNA -> TtdB
Components:
Function Name Type Evidence Reference(s)
product TtdB protein nd nd
reactant ttdABT_mRNA RNA nd nd
ttdABT_mRNA TtdT
Name: ttdABT_mRNA -> TtdT
Description: Translation of TtdT
Type: translation
Pathway Components: ttdABT_mRNA -> TtdT
Components:
Function Name Type Evidence Reference(s)
product TtdT protein nd nd
reactant ttdABT_mRNA RNA nd nd
TtdT succinate_Ext + tartrate_Ext succinate + tartrate
Name: succinate_Ext + tartrate_Ext -> succinate + tartrate
Description: Transport of succinate_Ext, tartrate_Ext through a bacterial membrane, leading to the presence of succinate, tartrate inside the cell.
Type: transport
Pathway Components: succinate_Ext + tartrate_Ext - TtdT -> succinate + tartrate
Components:
Function Name Type Evidence Reference(s)
catalyzer TtdT protein nd nd
product succinate simple_molecule nd nd
reactant succinate_Ext simple_molecule nd nd
product tartrate simple_molecule nd nd
reactant tartrate_Ext simple_molecule nd nd
ttdR_mRNA TtdR
Name: ttdR_mRNA -> TtdR
Description: Translation of TtdR
Type: translation
Pathway Components: ttdR_mRNA -> TtdR
Components:
Function Name Type Evidence Reference(s)
product TtdR protein nd nd
reactant ttdR_mRNA RNA nd nd



RegulonDB