RegulonDB RegulonDB

CsgD Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
AdrA CsgA CsgB CsgC CsgD CsgE CsgF CsgG FliE FliF FliG FliH FliI FliJ FliK IraP L-cysteine NlpA PepD WrbA YccJ YccT YhbS YhbT a dipeptide quinol quinone amino acids adrA adrA_mRNA an electron-transfer-related quinol an electron-transfer-related quinone csgBAC csgBAC_mRNA csgDEFG csgDEFG_mRNA CsgA CsgA_Ext Cys-Gly fliE fliE_mRNA fliFGHIJK fliFGHIJK_mRNA glycine iraP iraP_mRNA nlpA nlpA_mRNA pepD pepD_mRNA wrbA-yccJ wrbA-yccJ_mRNA yccT yccT_mRNA yhbTS yhbTS_mRNA CsgG CsgE CsgF


Gensor Unit       
Name: CsgD
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0045892 - negative regulation of transcription, DNA-templated
GO:0052621 - diguanylate cyclase activity
GO:0070573 - metallodipeptidase activity
GO:0008270 - zinc ion binding
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0000986 - bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding
GO:0006754 - ATP biosynthetic process
GO:0010181 - FMN binding
GO:0016020 - membrane
GO:0016491 - oxidoreductase activity
GO:0008080 - N-acetyltransferase activity
Read more >
Components:
Function Name Type
RNA yhbTS_mRNA RNA


Reactions       
Showing 40 reactions
adrA adrA_mRNA
Name: adrA -> adrA_mRNA
Description: Transcription of transcription unit adrA; reaction activation by CsgD.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant adrA gene nd nd
product adrA_mRNA RNA nd nd
csgBAC csgBAC_mRNA
Name: csgBAC -> csgBAC_mRNA
Description: Transcription of transcription unit csgBAC; reaction inhibition by CpxR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product csgBAC_mRNA RNA nd nd
reactant csgBAC gene nd nd
csgDEFG csgDEFG_mRNA
Name: csgDEFG -> csgDEFG_mRNA
Description: Transcription of transcription unit csgDEFG; reaction activation by BasR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product csgDEFG_mRNA RNA nd nd
reactant csgDEFG gene nd nd
fliE fliE_mRNA
Name: fliE -> fliE_mRNA
Description: Transcription of transcription unit fliE; reaction inhibition by CsgD.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant fliE gene nd nd
product fliE_mRNA RNA nd nd
fliFGHIJK fliFGHIJK_mRNA
Name: fliFGHIJK -> fliFGHIJK_mRNA
Description: Transcription of transcription unit fliFGHIJK; reaction inhibition by CsgD.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant fliFGHIJK gene nd nd
product fliFGHIJK_mRNA RNA nd nd
iraP iraP_mRNA
Name: iraP -> iraP_mRNA
Description: Transcription of transcription unit iraP; reaction activation by CsgD.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product iraP_mRNA RNA nd nd
reactant iraP gene nd nd
nlpA nlpA_mRNA
Name: nlpA -> nlpA_mRNA
Description: Transcription of transcription unit nlpA; reaction activation by CsgD.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant nlpA gene nd nd
product nlpA_mRNA RNA nd nd
pepD pepD_mRNA
Name: pepD -> pepD_mRNA
Description: Transcription of transcription unit pepD; reaction inhibition by CsgD.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product pepD_mRNA RNA nd nd
reactant pepD gene nd nd
wrbA-yccJ wrbA-yccJ_mRNA
Name: wrbA-yccJ -> wrbA-yccJ_mRNA
Description: Transcription of transcription unit wrbA-yccJ; reaction activation by CsgD.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant wrbA-yccJ gene nd nd
product wrbA-yccJ_mRNA RNA nd nd
yccT yccT_mRNA
Name: yccT -> yccT_mRNA
Description: Transcription of transcription unit yccT; reaction activation by CsgD.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant yccT gene nd nd
product yccT_mRNA RNA nd nd
yhbTS yhbTS_mRNA
Name: yhbTS -> yhbTS_mRNA
Description: Transcription of transcription unit yhbTS; reaction inhibition by CsgD.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant yhbTS gene nd nd
product yhbTS_mRNA RNA nd nd
fliFGHIJK_mRNA FliG
Name: fliFGHIJK_mRNA -> FliG
Description: Translation of FliG
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FliG protein nd nd
reactant fliFGHIJK_mRNA RNA nd nd
nlpA_mRNA NlpA
Name: nlpA_mRNA -> NlpA
Description: Translation of NlpA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant nlpA_mRNA RNA nd nd
product NlpA protein nd nd
csgDEFG_mRNA CsgF
Name: csgDEFG_mRNA -> CsgF
Description: Translation of CsgF
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant csgDEFG_mRNA RNA nd nd
product CsgF protein nd nd
CsgG + CsgE + CsgF CsgG-CsgE-CsgF
Name: CsgG + CsgE + CsgF -> CsgG-CsgE-CsgF
Description: Reaction transforming CsgG, CsgE, CsgF into CsgG-CsgE-CsgF
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product CsgG-CsgE-CsgF complex nd nd
reactant CsgF protein nd nd
reactant CsgG protein nd nd
reactant CsgE protein nd nd
CsgA_Ext CsgA
Name: CsgA_Ext -> CsgA
Description: Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant CsgA_Ext simple molecule nd nd
product CsgA simple molecule nd nd
fliFGHIJK_mRNA FliF
Name: fliFGHIJK_mRNA -> FliF
Description: Translation of FliF
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FliF protein nd nd
reactant fliFGHIJK_mRNA RNA nd nd
adrA_mRNA AdrA
Name: adrA_mRNA -> AdrA
Description: Translation of AdrA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant adrA_mRNA RNA nd nd
product AdrA protein nd nd
fliFGHIJK_mRNA FliJ
Name: fliFGHIJK_mRNA -> FliJ
Description: Translation of FliJ
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant fliFGHIJK_mRNA RNA nd nd
product FliJ protein nd nd
csgBAC_mRNA CsgB
Name: csgBAC_mRNA -> CsgB
Description: Translation of CsgB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant csgBAC_mRNA RNA nd nd
product CsgB protein nd nd
yhbTS_mRNA YhbS
Name: yhbTS_mRNA -> YhbS
Description: Translation of YhbS
Type: translation
Components:
Function Name Type Evidence Reference(s)
product YhbS protein nd nd
reactant yhbTS_mRNA RNA nd nd
wrbA-yccJ_mRNA WrbA
Name: wrbA-yccJ_mRNA -> WrbA
Description: Translation of WrbA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant wrbA-yccJ_mRNA RNA nd nd
product WrbA protein nd nd
quinone quinol
Name: quinone -> quinol
Description: Reaction transforming quinone into quinol
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant quinone simple molecule nd nd
product quinol simple molecule nd nd
an electron-transfer-related quinone an electron-transfer-related quinol
Name: an electron-transfer-related quinone -> an electron-transfer-related quinol
Description: Reaction transforming an electron-transfer-related quinone into an electron-transfer-related quinol
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product an electron-transfer-related quinol simple molecule nd nd
reactant an electron-transfer-related quinone simple molecule nd nd
csgDEFG_mRNA CsgE
Name: csgDEFG_mRNA -> CsgE
Description: Translation of CsgE
Type: translation
Components:
Function Name Type Evidence Reference(s)
product CsgE protein nd nd
reactant csgDEFG_mRNA RNA nd nd
fliFGHIJK_mRNA FliI
Name: fliFGHIJK_mRNA -> FliI
Description: Translation of FliI
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FliI protein nd nd
reactant fliFGHIJK_mRNA RNA nd nd
fliFGHIJK_mRNA FliH
Name: fliFGHIJK_mRNA -> FliH
Description: Translation of FliH
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant fliFGHIJK_mRNA RNA nd nd
product FliH protein nd nd
iraP_mRNA IraP
Name: iraP_mRNA -> IraP
Description: Translation of IraP
Type: translation
Components:
Function Name Type Evidence Reference(s)
product IraP protein nd nd
reactant iraP_mRNA RNA nd nd
pepD_mRNA PepD
Name: pepD_mRNA -> PepD
Description: Translation of PepD
Type: translation
Components:
Function Name Type Evidence Reference(s)
product PepD protein nd nd
reactant pepD_mRNA RNA nd nd
a dipeptide amino acids
Name: a dipeptide -> amino acids
Description: Reaction transforming a dipeptide into amino acids
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product amino acids simple molecule nd nd
reactant a dipeptide simple molecule nd nd
Cys-Gly L-cysteine + glycine
Name: Cys-Gly -> L-cysteine + glycine
Description: Reaction transforming Cys-Gly into L-cysteine, glycine
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant Cys-Gly simple molecule nd nd
product L-cysteine simple molecule nd nd
product glycine simple molecule nd nd
fliFGHIJK_mRNA FliK
Name: fliFGHIJK_mRNA -> FliK
Description: Translation of FliK
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FliK protein nd nd
reactant fliFGHIJK_mRNA RNA nd nd
csgBAC_mRNA CsgC
Name: csgBAC_mRNA -> CsgC
Description: Translation of CsgC
Type: translation
Components:
Function Name Type Evidence Reference(s)
product CsgC protein nd nd
reactant csgBAC_mRNA RNA nd nd
fliE_mRNA FliE
Name: fliE_mRNA -> FliE
Description: Translation of FliE
Type: translation
Components:
Function Name Type Evidence Reference(s)
product FliE protein nd nd
reactant fliE_mRNA RNA nd nd
wrbA-yccJ_mRNA YccJ
Name: wrbA-yccJ_mRNA -> YccJ
Description: Translation of YccJ
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant wrbA-yccJ_mRNA RNA nd nd
product YccJ protein nd nd
yccT_mRNA YccT
Name: yccT_mRNA -> YccT
Description: Translation of YccT
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant yccT_mRNA RNA nd nd
product YccT protein nd nd
csgDEFG_mRNA CsgD
Name: csgDEFG_mRNA -> CsgD
Description: Translation of CsgD
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant csgDEFG_mRNA RNA nd nd
product CsgD protein nd nd
csgDEFG_mRNA CsgG
Name: csgDEFG_mRNA -> CsgG
Description: Translation of CsgG
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant csgDEFG_mRNA RNA nd nd
product CsgG protein nd nd
csgBAC_mRNA CsgA
Name: csgBAC_mRNA -> CsgA
Description: Translation of CsgA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product CsgA protein nd nd
reactant csgBAC_mRNA RNA nd nd
yhbTS_mRNA YhbT
Name: yhbTS_mRNA -> YhbT
Description: Translation of YhbT
Type: translation
Components:
Function Name Type Evidence Reference(s)
product YhbT protein nd nd
reactant yhbTS_mRNA RNA nd nd



RegulonDB