RegulonDB RegulonDB

CsiR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
L-2-hydroxyglutarate ketoglutarate GABA GABA_Ext CsiD CsiR GabD GabP GabT L-glutamate LhgO csiD-lhgO-gabDTP csiD-lhgO-gabDTP_mRNA perhydrol oxygen succinate succ-S-ald


Gensor Unit       
Name: CsiR
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0003333 - amino acid transmembrane transport
GO:0006865 - amino acid transport
GO:0006974 - cellular response to DNA damage stimulus
GO:0009450 - gamma-aminobutyric acid catabolic process
GO:0009448 - gamma-aminobutyric acid metabolic process
GO:0015812 - gamma-aminobutyric acid transport
GO:0008152 - metabolic process
GO:0006807 - nitrogen compound metabolic process
GO:0055114 - oxidation-reduction process
GO:0055085 - transmembrane transport
GO:0006810 - transport
Read more >
Components:
Function Name Type
simple molecule succ-S-ald simple molecule


Reactions       
Showing 10 reactions
csiD-lhgO-gabDTP csiD-lhgO-gabDTP_mRNA
Name: csiD-lhgO-gabDTP -> csiD-lhgO-gabDTP_mRNA
Description: Transcription of transcription unit csiD-lhgO-gabDTP; reaction inhibition by CsiR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant csiD-lhgO-gabDTP gene nd nd
product csiD-lhgO-gabDTP_mRNA RNA nd nd
csiD-lhgO-gabDTP_mRNA LhgO
Name: csiD-lhgO-gabDTP_mRNA -> LhgO
Description: Translation of LhgO
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product LhgO protein nd nd
reactant csiD-lhgO-gabDTP_mRNA RNA nd nd
L-2-hydroxyglutarate + oxygen ketoglutarate + perhydrol
Name: L-2-hydroxyglutarate + oxygen -> ketoglutarate + perhydrol
Description: Reaction transforming L-2-hydroxyglutarate, oxygen into ketoglutarate, perhydrol
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant L-2-hydroxyglutarate simple molecule nd nd
product ketoglutarate simple molecule nd nd
reactant oxygen simple molecule nd nd
product perhydrol simple molecule nd nd
csiD-lhgO-gabDTP_mRNA GabT
Name: csiD-lhgO-gabDTP_mRNA -> GabT
Description: Translation of GabT
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product GabT protein nd nd
reactant csiD-lhgO-gabDTP_mRNA RNA nd nd
ketoglutarate + GABA L-glutamate + succ-S-ald
Name: ketoglutarate + GABA -> L-glutamate + succ-S-ald
Description: Reaction transforming ketoglutarate, GABA into L-glutamate, succ-S-ald
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant GABA simple molecule nd nd
product L-glutamate simple molecule nd nd
reactant ketoglutarate simple molecule nd nd
product succ-S-ald simple molecule nd nd
csiD-lhgO-gabDTP_mRNA CsiD
Name: csiD-lhgO-gabDTP_mRNA -> CsiD
Description: Translation of CsiD
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product CsiD protein nd nd
reactant csiD-lhgO-gabDTP_mRNA RNA nd nd
csiD-lhgO-gabDTP_mRNA GabD
Name: csiD-lhgO-gabDTP_mRNA -> GabD
Description: Translation of GabD
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product GabD protein nd nd
reactant csiD-lhgO-gabDTP_mRNA RNA nd nd
succ-S-ald suc
Name: succ-S-ald -> suc
Description: Reaction transforming succ-S-ald into suc
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product suc simple molecule nd nd
reactant succ-S-ald simple molecule nd nd
csiD-lhgO-gabDTP_mRNA GabP
Name: csiD-lhgO-gabDTP_mRNA -> GabP
Description: Translation of GabP
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product GabP protein nd nd
reactant csiD-lhgO-gabDTP_mRNA RNA nd nd
GABA_Ext GABA
Name: GABA_Ext -> GABA
Description: Transport of GABA_Ext through a bacterial membrane, leading to the presence of GABA inside the compartment.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product GABA simple molecule nd nd
reactant GABA_Ext simple molecule nd nd



RegulonDB