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CdaR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
2-P-D-glycerate KDG CdaR mucate mucate_Ext glucarate glucarate_Ext D-glycerate D-glycerate_Ext GarD GarK GarL GarP GarR GudD GudP GudX RnpB ssRNA a tRNA precursor with a 5' extension a tRNA precursor with a 5' extension and a short 3' extension a tRNA precursor with a short 3' extension an uncharged tRNA cdaR cdaR_mRNA garD garD_mRNA garPLRK-rnpB garPLRK-rnpB_mRNA gudPXD gudPXD_mRNA pyruvate tartronate semialdehyde L-idarate


Gensor Unit       
Name: CdaR
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0050662 - coenzyme binding
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0016491 - oxidoreductase activity
GO:0044248 - cellular catabolic process
GO:0016020 - membrane
GO:0003824 - catalytic activity
GO:0031388 - organic acid phosphorylation
GO:0008887 - glycerate kinase activity
GO:0016310 - phosphorylation
GO:0016829 - lyase activity
GO:0005737 - cytoplasm
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Components:
Function Name Type
simple molecule tartronate semialdehyde simple molecule


Reactions       
Showing 27 reactions
cdaR cdaR_mRNA
Name: cdaR -> cdaR_mRNA
Description: Transcription of transcription unit cdaR; reaction activation by CdaR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product cdaR_mRNA RNA nd nd
reactant cdaR gene nd nd
garD garD_mRNA
Name: garD -> garD_mRNA
Description: Transcription of transcription unit garD; reaction activation by CdaR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product garD_mRNA RNA nd nd
reactant garD gene nd nd
garPLRK-rnpB garPLRK-rnpB_mRNA
Name: garPLRK-rnpB -> garPLRK-rnpB_mRNA
Description: Transcription of transcription unit garPLRK-rnpB; reaction activation by CdaR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant garPLRK-rnpB gene nd nd
product garPLRK-rnpB_mRNA RNA nd nd
gudPXD gudPXD_mRNA
Name: gudPXD -> gudPXD_mRNA
Description: Transcription of transcription unit gudPXD; reaction activation by CdaR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product gudPXD_mRNA RNA nd nd
reactant gudPXD gene nd nd
garPLRK-rnpB_mRNA GarL
Name: garPLRK-rnpB_mRNA -> GarL
Description: Translation of GarL
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GarL protein nd nd
reactant garPLRK-rnpB_mRNA RNA nd nd
KDG pyruvate + tartronate semialdehyde
Name: KDG -> pyruvate + tartronate semialdehyde
Description: Reaction transforming KDG into pyruvate, tartronate semialdehyde
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product pyruvate simple molecule nd nd
reactant KDG simple molecule nd nd
product tartronate semialdehyde simple molecule nd nd
garPLRK-rnpB_mRNA RnpB
Name: garPLRK-rnpB_mRNA -> RnpB
Description: Translation of RnpB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant garPLRK-rnpB_mRNA RNA nd nd
product RnpB protein nd nd
a tRNA precursor with a 5′ extension an uncharged tRNA + ssRNA
Name: a tRNA precursor with a 5′ extension -> an uncharged tRNA + ssRNA
Description: Reaction transforming a tRNA precursor with a 5′ extension into an uncharged tRNA, ssRNA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a tRNA precursor with a 5′ extension simple molecule nd nd
product an uncharged tRNA simple molecule nd nd
product ssRNA simple molecule nd nd
a tRNA precursor with a 5′ extension and a short 3′ extension a tRNA precursor with a short 3′ extension + ssRNA
Name: a tRNA precursor with a 5′ extension and a short 3′ extension -> a tRNA precursor with a short 3′ extension + ssRNA
Description: Reaction transforming a tRNA precursor with a 5′ extension and a short 3′ extension into a tRNA precursor with a short 3′ extension, ssRNA
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant a tRNA precursor with a 5′ extension and a short 3′ extension simple molecule nd nd
product ssRNA simple molecule nd nd
product a tRNA precursor with a short 3′ extension simple molecule nd nd
gudPXD_mRNA GudD
Name: gudPXD_mRNA -> GudD
Description: Translation of GudD
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GudD protein nd nd
reactant gudPXD_mRNA RNA nd nd
L-idarate glucarate
Name: L-idarate -> glucarate
Description: Reaction transforming L-idarate into glucarate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant L-idarate simple molecule nd nd
product glucarate simple molecule nd nd
glucarate KDG
Name: glucarate -> KDG
Description: Reaction transforming glucarate into KDG
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product KDG simple molecule nd nd
reactant glucarate simple molecule nd nd
gudPXD_mRNA GudX
Name: gudPXD_mRNA -> GudX
Description: Translation of GudX
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GudX protein nd nd
reactant gudPXD_mRNA RNA nd nd
cdaR_mRNA CdaR
Name: cdaR_mRNA -> CdaR
Description: Translation of CdaR
Type: translation
Components:
Function Name Type Evidence Reference(s)
product CdaR protein nd nd
reactant cdaR_mRNA RNA nd nd
garPLRK-rnpB_mRNA GarK
Name: garPLRK-rnpB_mRNA -> GarK
Description: Translation of GarK
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GarK protein nd nd
reactant garPLRK-rnpB_mRNA RNA nd nd
D-glycerate 2-P-D-glycerate
Name: D-glycerate -> 2-P-D-glycerate
Description: Reaction transforming D-glycerate into 2-P-D-glycerate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant D-glycerate simple molecule nd nd
product 2-P-D-glycerate simple molecule nd nd
garPLRK-rnpB_mRNA GarR
Name: garPLRK-rnpB_mRNA -> GarR
Description: Translation of GarR
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GarR protein nd nd
reactant garPLRK-rnpB_mRNA RNA nd nd
D-glycerate tartronate semialdehyde
Name: D-glycerate -> tartronate semialdehyde
Description: Reaction transforming D-glycerate into tartronate semialdehyde
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant D-glycerate simple molecule nd nd
product tartronate semialdehyde simple molecule nd nd
gudPXD_mRNA GudP
Name: gudPXD_mRNA -> GudP
Description: Translation of GudP
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GudP protein nd nd
reactant gudPXD_mRNA RNA nd nd
D-glycerate_Ext D-glycerate
Name: D-glycerate_Ext -> D-glycerate
Description: Transport of D-glycerate_Ext through a bacterial membrane, leading to the presence of D-glycerate inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product D-glycerate simple molecule nd nd
reactant D-glycerate_Ext simple molecule nd nd
glucarate_Ext glucarate
Name: glucarate_Ext -> glucarate
Description: Transport of glucarate_Ext through a bacterial membrane, leading to the presence of glucarate inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
product glucarate simple molecule nd nd
reactant glucarate_Ext simple molecule nd nd
mucate_Ext mucate
Name: mucate_Ext -> mucate
Description: Transport of mucate_Ext through a bacterial membrane, leading to the presence of mucate inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant mucate_Ext simple molecule nd nd
product mucate simple molecule nd nd
garPLRK-rnpB_mRNA GarP
Name: garPLRK-rnpB_mRNA -> GarP
Description: Translation of GarP
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant garPLRK-rnpB_mRNA RNA nd nd
product GarP protein nd nd
garD_mRNA GarD
Name: garD_mRNA -> GarD
Description: Translation of GarD
Type: translation
Components:
Function Name Type Evidence Reference(s)
product GarD protein nd nd
reactant garD_mRNA RNA nd nd
mucate KDG
Name: mucate -> KDG
Description: Reaction transforming mucate into KDG
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product KDG simple molecule nd nd
reactant mucate simple molecule nd nd
a tRNA precursor with a short 3′ extension an uncharged tRNA
Name: a tRNA precursor with a short 3′ extension -> an uncharged tRNA
Description: Transformation of a tRNA precursor with a short 3′ extension into an uncharged tRNA by one, or two/three reactions not shown.
Type: super-reaction
Components:
Function Name Type Evidence Reference(s)
reactant a tRNA precursor with a short 3′ extension simple molecule nd nd
product an uncharged tRNA simple molecule nd nd
a tRNA precursor with a 5′ extension and a short 3′ extension a tRNA precursor with a 5′ extension
Name: a tRNA precursor with a 5′ extension and a short 3′ extension -> a tRNA precursor with a 5′ extension
Description: Transformation of a tRNA precursor with a 5′ extension and a short 3′ extension into a tRNA precursor with a 5′ extension by one, or two/three reactions not shown.
Type: super-reaction
Components:
Function Name Type Evidence Reference(s)
product a tRNA precursor with a 5′ extension simple molecule nd nd
reactant a tRNA precursor with a 5′ extension and a short 3′ extension simple molecule nd nd



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