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CadC Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
BioDex 1- cadBA_mRNA LdcI cadC BioDex 1-_Ext CadC cadBA cadC_mRNA CadA CadB lysine_Ext lysine


Gensor Unit       
Name: CadC
Classification:
Groups: Transcription
Amino acid transport and metabolism
Gene Ontology Terms (GO): biological_process GO:1903401 - L-lysine transmembrane transport
GO:0003333 - amino acid transmembrane transport
GO:0006865 - amino acid transport
GO:0015839 - cadaverine transport
GO:0006520 - cellular amino acid metabolic process
GO:1990451 - cellular stress response to acidic pH
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cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
GO:0005622 - intracellular anatomical structure
GO:0016020 - membrane
GO:0005886 - plasma membrane
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molecular_function GO:0003677 - DNA binding
GO:0015171 - amino acid transmembrane transporter activity
GO:0015297 - antiporter activity
GO:0016831 - carboxy-lyase activity
GO:0003824 - catalytic activity
GO:0097216 - guanosine tetraphosphate binding
GO:0042802 - identical protein binding
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Components:
  Function Name Type
  simple_molecule BioDex 1- simple_molecule
  simple_molecule BioDex 1-_Ext simple_molecule
  simple_molecule CO2 simple_molecule
  protein CadA protein
  protein CadB protein
  protein CadC protein
  protein LdcI protein
  gene cadBA gene
  RNA cadBA_mRNA RNA
  gene cadC gene
  RNA cadC_mRNA RNA
  simple_molecule lysine simple_molecule
  simple_molecule lysine_Ext simple_molecule


Reactions       
Showing 9 reactions
CadC cadBA cadBA_mRNA
Name: cadBA -> cadBA_mRNA
Description: Transcription of transcription unit cadBA. Reaction activation by CadC.
Type: transcription
Pathway Components: cadBA - CadC -> cadBA_mRNA
Components:
Function Name Type
activator CadC protein
reactant cadBA gene
product cadBA_mRNA RNA
CadC cadC cadC_mRNA
Name: cadC -> cadC_mRNA
Description: Transcription of transcription unit cadC. Reaction activation by CadC.
Type: transcription
Pathway Components: cadC - CadC -> cadC_mRNA
Components:
Function Name Type
activator CadC protein
reactant cadC gene
product cadC_mRNA RNA
cadBA_mRNA CadB
Name: cadBA_mRNA -> CadB
Description: Translation of CadB
Type: translation
Pathway Components: cadBA_mRNA -> CadB
Components:
Function Name Type
product CadB protein
reactant cadBA_mRNA RNA
CadB BioDex 1-_Ext + lysine_Ext BioDex 1- + lysine
Name: BioDex 1-_Ext + lysine_Ext -> BioDex 1- + lysine
Description: Transport of BioDex 1-_Ext, lysine_Ext through a bacterial membrane, leading to the presence of BioDex 1-, lysine inside the cell.
Type: transport
Pathway Components: BioDex 1-_Ext + lysine_Ext - CadB -> BioDex 1- + lysine
Components:
Function Name Type
product BioDex 1- simple_molecule
reactant BioDex 1-_Ext simple_molecule
catalyzer CadB protein
product lysine simple_molecule
reactant lysine_Ext simple_molecule
CadB BioDex 1-_Ext BioDex 1-
Name: BioDex 1-_Ext -> BioDex 1-
Description: Transport of BioDex 1-_Ext through a bacterial membrane, leading to the presence of BioDex 1- inside the cell.
Type: transport
Pathway Components: BioDex 1-_Ext - CadB -> BioDex 1-
Components:
Function Name Type
product BioDex 1- simple_molecule
reactant BioDex 1-_Ext simple_molecule
catalyzer CadB protein
cadBA_mRNA CadA
Name: cadBA_mRNA -> CadA
Description: Translation of CadA
Type: translation
Pathway Components: cadBA_mRNA -> CadA
Components:
Function Name Type
product CadA protein
reactant cadBA_mRNA RNA
CadA LdcI lysine BioDex 1- + CO2
Name: lysine -> BioDex 1- + CO2
Description: Reaction transforming lysine into BioDex 1-, CO2
Type: state transition
Pathway Components: lysine - CadA - LdcI -> BioDex 1- + CO2
Components:
Function Name Type
product BioDex 1- simple_molecule
product CO2 simple_molecule
catalyzer CadA protein
catalyzer LdcI protein
reactant lysine simple_molecule
cadBA_mRNA LdcI
Name: cadBA_mRNA -> LdcI
Description: Translation of LdcI
Type: translation
Pathway Components: cadBA_mRNA -> LdcI
Components:
Function Name Type
product LdcI protein
reactant cadBA_mRNA RNA
cadC_mRNA CadC
Name: cadC_mRNA -> CadC
Description: Translation of CadC
Type: translation
Pathway Components: cadC_mRNA -> CadC
Components:
Function Name Type
product CadC protein
reactant cadC_mRNA RNA



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