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BasR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
pyrroline 5-carboxylate BasR CsgD CsgE CsgF CsgG CspI DgkA FimB Hha L-glutamate L-proline phosphate PutA TomB YrbL a 1,2-diacyl-sn-glycerol-3-phosphate a 1,2-diglyceride an ubiquinol ubiquinone csgDEFG csgDEFG_mRNA cspI cspI_mRNA CsgA CsgA_Ext dgkA dgkA_mRNA fimB fimB_mRNA putA putA_mRNA tomB-hha tomB-hha_mRNA yrbL yrbL_mRNA BasR phosphate CsgG CsgE CsgF


Gensor Unit       
Name: BasR
Signal name: elevated levels of Fe(III).
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0015074 - DNA integration
GO:0006310 - DNA recombination
GO:0022610 - biological adhesion
GO:0006974 - cellular response to DNA damage stimulus
GO:0045892 - negative regulation of transcription, DNA-templated
GO:0018106 - peptidyl-histidine phosphorylation
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cellular_component GO:0009279 - cell outer membrane
GO:0009898 - cytoplasmic side of plasma membrane
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0005622 - intracellular
GO:0031246 - intrinsic component of periplasmic side of cell outer membrane
GO:0016020 - membrane
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molecular_function GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity
GO:0003677 - DNA binding
GO:0003700 - DNA binding transcription factor activity
GO:0001216 - bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
GO:0000986 - bacterial-type proximal promoter sequence-specific DNA binding
GO:0004143 - diacylglycerol kinase activity
GO:0050660 - flavin adenine dinucleotide binding
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Components: Show/Hide Components Table (42 more...)
Function Name Type
protein BasR protein
simple_molecule CsgA simple_molecule
simple_molecule CsgA_Ext simple_molecule
protein CsgD protein
protein CsgE protein
complex CsgE-CsgG complex
protein CsgF protein
protein CsgG protein
protein CspI protein
simple_molecule D-1,2-diglyceride simple_molecule
protein DgkA protein
protein FimB protein
protein Hha protein
simple_molecule L-glutamate simple_molecule
protein PutA protein
protein QseB protein
protein QseC protein
protein TomB protein
protein YgiY protein
protein YrbL protein
gene csgDEFG gene
RNA csgDEFG_mRNA RNA
gene cspI gene
RNA cspI_mRNA RNA
gene dgkA gene
RNA dgkA_mRNA RNA
gene fimB gene
RNA fimB_mRNA RNA
simple_molecule glutamate-semialdehyde simple_molecule
simple_molecule phosphatidate simple_molecule
simple_molecule proline simple_molecule
gene putA gene
RNA putA_mRNA RNA
simple_molecule pyrroline 5-carboxylate simple_molecule
gene qseBC gene
RNA qseBC_mRNA RNA
gene tomB-hha gene
RNA tomB-hha_mRNA RNA
simple_molecule ubiquinol simple_molecule
simple_molecule ubiquinone simple_molecule
gene yrbL gene
RNA yrbL_mRNA RNA


Reactions       
Showing 28 reactions
BasR csgDEFG csgDEFG_mRNA
Name: csgDEFG -> csgDEFG_mRNA
Description: Transcription of transcription unit csgDEFG. Reaction activation by BasR.
Type: transcription
Pathway Components: csgDEFG - BasR -> csgDEFG_mRNA
Components:
Function Name Type Evidence Reference(s)
activator BasR protein nd nd
reactant csgDEFG gene nd nd
product csgDEFG_mRNA RNA nd nd
BasR cspI cspI_mRNA
Name: cspI -> cspI_mRNA
Description: Transcription of transcription unit cspI. Reaction activation by BasR.
Type: transcription
Pathway Components: cspI - BasR -> cspI_mRNA
Components:
Function Name Type Evidence Reference(s)
activator BasR protein nd nd
reactant cspI gene nd nd
product cspI_mRNA RNA nd nd
BasR dgkA dgkA_mRNA
Name: dgkA -> dgkA_mRNA
Description: Transcription of transcription unit dgkA. Reaction activation by BasR.
Type: transcription
Pathway Components: dgkA - BasR -> dgkA_mRNA
Components:
Function Name Type Evidence Reference(s)
activator BasR protein nd nd
reactant dgkA gene nd nd
product dgkA_mRNA RNA nd nd
BasR fimB fimB_mRNA
Name: fimB -> fimB_mRNA
Description: Transcription of transcription unit fimB. Reaction activation by BasR.
Type: transcription
Pathway Components: fimB - BasR -> fimB_mRNA
Components:
Function Name Type Evidence Reference(s)
activator BasR protein nd nd
reactant fimB gene nd nd
product fimB_mRNA RNA nd nd
BasR putA putA_mRNA
Name: putA -> putA_mRNA
Description: Transcription of transcription unit putA. Reaction inhibition by BasR.
Type: transcription
Pathway Components: putA - BasR -> putA_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor BasR protein nd nd
reactant putA gene nd nd
product putA_mRNA RNA nd nd
BasR qseBC qseBC_mRNA
Name: qseBC -> qseBC_mRNA
Description: Transcription of transcription unit qseBC. Reaction activation by BasR.
Type: transcription
Pathway Components: qseBC - BasR -> qseBC_mRNA
Components:
Function Name Type Evidence Reference(s)
activator BasR protein nd nd
reactant qseBC gene nd nd
product qseBC_mRNA RNA nd nd
BasR tomB-hha tomB-hha_mRNA
Name: tomB-hha -> tomB-hha_mRNA
Description: Transcription of transcription unit tomB-hha. Reaction activation by BasR.
Type: transcription
Pathway Components: tomB-hha - BasR -> tomB-hha_mRNA
Components:
Function Name Type Evidence Reference(s)
activator BasR protein nd nd
reactant tomB-hha gene nd nd
product tomB-hha_mRNA RNA nd nd
BasR yrbL yrbL_mRNA
Name: yrbL -> yrbL_mRNA
Description: Transcription of transcription unit yrbL. Reaction inhibition by BasR.
Type: transcription
Pathway Components: yrbL - BasR -> yrbL_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor BasR protein nd nd
reactant yrbL gene nd nd
product yrbL_mRNA RNA nd nd
fimB_mRNA FimB
Name: fimB_mRNA -> FimB
Description: Translation of FimB
Type: translation
Pathway Components: fimB_mRNA -> FimB
Components:
Function Name Type Evidence Reference(s)
product FimB protein nd nd
reactant fimB_mRNA RNA nd nd
yrbL_mRNA YrbL
Name: yrbL_mRNA -> YrbL
Description: Translation of YrbL
Type: translation
Pathway Components: yrbL_mRNA -> YrbL
Components:
Function Name Type Evidence Reference(s)
product YrbL protein nd nd
reactant yrbL_mRNA RNA nd nd
dgkA_mRNA DgkA
Name: dgkA_mRNA -> DgkA
Description: Translation of DgkA
Type: translation
Pathway Components: dgkA_mRNA -> DgkA
Components:
Function Name Type Evidence Reference(s)
product DgkA protein nd nd
reactant dgkA_mRNA RNA nd nd
D-1,2-diglyceride DgkA D-1,2-diglyceride phosphatidate
Name: D-1,2-diglyceride -> phosphatidate
Description: Reaction transforming D-1,2-diglyceride into phosphatidate
Type: state transition
Pathway Components: D-1,2-diglyceride - DgkA - D-1,2-diglyceride -> phosphatidate
Components:
Function Name Type Evidence Reference(s)
inhibitor D-1,2-diglyceride simple_molecule nd nd
reactant D-1,2-diglyceride simple_molecule nd nd
catalyzer DgkA protein nd nd
product phosphatidate simple_molecule nd nd
tomB-hha_mRNA TomB
Name: tomB-hha_mRNA -> TomB
Description: Translation of TomB
Type: translation
Pathway Components: tomB-hha_mRNA -> TomB
Components:
Function Name Type Evidence Reference(s)
product TomB protein nd nd
reactant tomB-hha_mRNA RNA nd nd
tomB-hha_mRNA Hha
Name: tomB-hha_mRNA -> Hha
Description: Translation of Hha
Type: translation
Pathway Components: tomB-hha_mRNA -> Hha
Components:
Function Name Type Evidence Reference(s)
product Hha protein nd nd
reactant tomB-hha_mRNA RNA nd nd
putA_mRNA PutA
Name: putA_mRNA -> PutA
Description: Translation of PutA
Type: translation
Pathway Components: putA_mRNA -> PutA
Components:
Function Name Type Evidence Reference(s)
product PutA protein nd nd
reactant putA_mRNA RNA nd nd
PutA ubiquinone + proline pyrroline 5-carboxylate + ubiquinol
Name: ubiquinone + proline -> pyrroline 5-carboxylate + ubiquinol
Description: Reaction transforming ubiquinone, proline into pyrroline 5-carboxylate, ubiquinol
Type: state transition
Pathway Components: ubiquinone + proline - PutA -> pyrroline 5-carboxylate + ubiquinol
Components:
Function Name Type Evidence Reference(s)
catalyzer PutA protein nd nd
reactant proline simple_molecule nd nd
product pyrroline 5-carboxylate simple_molecule nd nd
product ubiquinol simple_molecule nd nd
reactant ubiquinone simple_molecule nd nd
PutA glutamate-semialdehyde L-glutamate
Name: glutamate-semialdehyde -> L-glutamate
Description: Reaction transforming glutamate-semialdehyde into L-glutamate
Type: state transition
Pathway Components: glutamate-semialdehyde - PutA -> L-glutamate
Components:
Function Name Type Evidence Reference(s)
product L-glutamate simple_molecule nd nd
catalyzer PutA protein nd nd
reactant glutamate-semialdehyde simple_molecule nd nd
csgDEFG_mRNA CsgD
Name: csgDEFG_mRNA -> CsgD
Description: Translation of CsgD
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgD
Components:
Function Name Type Evidence Reference(s)
product CsgD protein nd nd
reactant csgDEFG_mRNA RNA nd nd
csgDEFG_mRNA CsgE
Name: csgDEFG_mRNA -> CsgE
Description: Translation of CsgE
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgE
Components:
Function Name Type Evidence Reference(s)
product CsgE protein nd nd
reactant csgDEFG_mRNA RNA nd nd
CsgG + CsgE CsgE-CsgG
Name: CsgG + CsgE -> CsgE-CsgG
Description: Reaction transforming CsgG, CsgE into CsgE-CsgG
Type: state transition
Pathway Components: CsgG + CsgE -> CsgE-CsgG
Components:
Function Name Type Evidence Reference(s)
reactant CsgE protein nd nd
product CsgE-CsgG complex nd nd
reactant CsgG protein nd nd
CsgE-CsgG CsgA_Ext CsgA
Name: CsgA_Ext -> CsgA
Description: Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the cell.
Type: transport
Pathway Components: CsgA_Ext - CsgE-CsgG -> CsgA
Components:
Function Name Type Evidence Reference(s)
product CsgA simple_molecule nd nd
reactant CsgA_Ext simple_molecule nd nd
catalyzer CsgE-CsgG complex nd nd
csgDEFG_mRNA CsgF
Name: csgDEFG_mRNA -> CsgF
Description: Translation of CsgF
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgF
Components:
Function Name Type Evidence Reference(s)
product CsgF protein nd nd
reactant csgDEFG_mRNA RNA nd nd
csgDEFG_mRNA CsgG
Name: csgDEFG_mRNA -> CsgG
Description: Translation of CsgG
Type: translation
Pathway Components: csgDEFG_mRNA -> CsgG
Components:
Function Name Type Evidence Reference(s)
product CsgG protein nd nd
reactant csgDEFG_mRNA RNA nd nd
qseBC_mRNA QseB
Name: qseBC_mRNA -> QseB
Description: Translation of QseB
Type: translation
Pathway Components: qseBC_mRNA -> QseB
Components:
Function Name Type Evidence Reference(s)
product QseB protein nd nd
reactant qseBC_mRNA RNA nd nd
qseBC_mRNA QseC
Name: qseBC_mRNA -> QseC
Description: Translation of QseC
Type: translation
Pathway Components: qseBC_mRNA -> QseC
Components:
Function Name Type Evidence Reference(s)
product QseC protein nd nd
reactant qseBC_mRNA RNA nd nd
qseBC_mRNA YgiY
Name: qseBC_mRNA -> YgiY
Description: Translation of YgiY
Type: translation
Pathway Components: qseBC_mRNA -> YgiY
Components:
Function Name Type Evidence Reference(s)
product YgiY protein nd nd
reactant qseBC_mRNA RNA nd nd
cspI_mRNA CspI
Name: cspI_mRNA -> CspI
Description: Translation of CspI
Type: translation
Pathway Components: cspI_mRNA -> CspI
Components:
Function Name Type Evidence Reference(s)
product CspI protein nd nd
reactant cspI_mRNA RNA nd nd
pyrroline 5-carboxylate glutamate-semialdehyde
Name: pyrroline 5-carboxylate -> glutamate-semialdehyde
Description: Transformation of pyrroline 5-carboxylate into glutamate-semialdehyde by one or more reactions not shown.
Type: complementary pathway reaction
Pathway Components: pyrroline 5-carboxylate / SPONTPRO-RXN / glutamate-semialdehyde
Components:
Function Name Type Evidence Reference(s)
product glutamate-semialdehyde simple_molecule nd nd
reactant pyrroline 5-carboxylate simple_molecule nd nd



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