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BasR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
pyrroline 5-carboxylate BasR CsgD CsgE CsgF CsgG CspI DgkA FimB Hha L-glutamate L-proline phosphate PutA TomB YrbL a 1,2-diacyl-sn-glycerol-3-phosphate a 1,2-diglyceride an ubiquinol ubiquinone csgDEFG csgDEFG_mRNA cspI cspI_mRNA CsgA CsgA_Ext dgkA dgkA_mRNA fimB fimB_mRNA putA putA_mRNA tomB-hha tomB-hha_mRNA yrbL yrbL_mRNA BasR phosphate CsgG CsgE CsgF


Gensor Unit       
Name: BasR
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0003824 - catalytic activity
GO:0000986 - bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding
GO:0006562 - proline catabolic process
GO:0006654 - phosphatidic acid biosynthetic process
GO:0008654 - phospholipid biosynthetic process
GO:0016020 - membrane
GO:0016491 - oxidoreductase activity
GO:0044010 - single-species biofilm formation
GO:0003676 - nucleic acid binding
GO:0009409 - response to cold
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Components:
Function Name Type
RNA yrbL_mRNA RNA


Reactions       
Showing 24 reactions
BasR + phosphate BasR-Phosphorylated
Name: BasR + phosphate -> BasR-Phosphorylated
Description: Reaction transforming BasR, phosphate into BasR-Phosphorylated
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant phosphate simple molecule nd nd
product BasR-Phosphorylated complex nd nd
reactant BasR protein nd nd
csgDEFG csgDEFG_mRNA
Name: csgDEFG -> csgDEFG_mRNA
Description: Transcription of transcription unit csgDEFG; reaction activation by BasR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product csgDEFG_mRNA RNA nd nd
reactant csgDEFG gene nd nd
cspI cspI_mRNA
Name: cspI -> cspI_mRNA
Description: Transcription of transcription unit cspI; reaction activation by BasR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant cspI gene nd nd
product cspI_mRNA RNA nd nd
dgkA dgkA_mRNA
Name: dgkA -> dgkA_mRNA
Description: Transcription of transcription unit dgkA; reaction activation by BasR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product dgkA_mRNA RNA nd nd
reactant dgkA gene nd nd
fimB fimB_mRNA
Name: fimB -> fimB_mRNA
Description: Transcription of transcription unit fimB; reaction activation by BasR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product fimB_mRNA RNA nd nd
reactant fimB gene nd nd
putA putA_mRNA
Name: putA -> putA_mRNA
Description: Transcription of transcription unit putA; reaction inhibition by BasR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product putA_mRNA RNA nd nd
reactant putA gene nd nd
tomB-hha tomB-hha_mRNA
Name: tomB-hha -> tomB-hha_mRNA
Description: Transcription of transcription unit tomB-hha; reaction activation by BasR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product tomB-hha_mRNA RNA nd nd
reactant tomB-hha gene nd nd
yrbL yrbL_mRNA
Name: yrbL -> yrbL_mRNA
Description: Transcription of transcription unit yrbL; reaction inhibition by BasR-Phosphorylated.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant yrbL gene nd nd
product yrbL_mRNA RNA nd nd
csgDEFG_mRNA CsgF
Name: csgDEFG_mRNA -> CsgF
Description: Translation of CsgF
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant csgDEFG_mRNA RNA nd nd
product CsgF protein nd nd
CsgG + CsgE + CsgF CsgG-CsgE-CsgF
Name: CsgG + CsgE + CsgF -> CsgG-CsgE-CsgF
Description: Reaction transforming CsgG, CsgE, CsgF into CsgG-CsgE-CsgF
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product CsgG-CsgE-CsgF complex nd nd
reactant CsgF protein nd nd
reactant CsgG protein nd nd
reactant CsgE protein nd nd
CsgA_Ext CsgA
Name: CsgA_Ext -> CsgA
Description: Transport of CsgA_Ext through a bacterial membrane, leading to the presence of CsgA inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant CsgA_Ext simple molecule nd nd
product CsgA simple molecule nd nd
fimB_mRNA FimB
Name: fimB_mRNA -> FimB
Description: Translation of FimB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant fimB_mRNA RNA nd nd
product FimB protein nd nd
yrbL_mRNA YrbL
Name: yrbL_mRNA -> YrbL
Description: Translation of YrbL
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant yrbL_mRNA RNA nd nd
product YrbL protein nd nd
dgkA_mRNA DgkA
Name: dgkA_mRNA -> DgkA
Description: Translation of DgkA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant dgkA_mRNA RNA nd nd
product DgkA protein nd nd
a 1,2-diglyceride a 1,2-diacyl-sn-glycerol-3-phosphate
Name: a 1,2-diglyceride -> a 1,2-diacyl-sn-glycerol-3-phosphate
Description: Reaction transforming a 1,2-diglyceride into a 1,2-diacyl-sn-glycerol-3-phosphate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product a 1,2-diacyl-sn-glycerol-3-phosphate simple molecule nd nd
reactant a 1,2-diglyceride simple molecule nd nd
putA_mRNA PutA
Name: putA_mRNA -> PutA
Description: Translation of PutA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant putA_mRNA RNA nd nd
product PutA protein nd nd
ubiquinone + L-proline an ubiquinol + pyrroline 5-carboxylate
Name: ubiquinone + L-proline -> an ubiquinol + pyrroline 5-carboxylate
Description: Reaction transforming ubiquinone, L-proline into an ubiquinol, pyrroline 5-carboxylate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant ubiquinone simple molecule nd nd
product pyrroline 5-carboxylate simple molecule nd nd
reactant L-proline simple molecule nd nd
product an ubiquinol simple molecule nd nd
pyrroline 5-carboxylate L-glutamate
Name: pyrroline 5-carboxylate -> L-glutamate
Description: Reaction transforming pyrroline 5-carboxylate into L-glutamate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product L-glutamate simple molecule nd nd
reactant pyrroline 5-carboxylate simple molecule nd nd
tomB-hha_mRNA Hha
Name: tomB-hha_mRNA -> Hha
Description: Translation of Hha
Type: translation
Components:
Function Name Type Evidence Reference(s)
product Hha protein nd nd
reactant tomB-hha_mRNA RNA nd nd
tomB-hha_mRNA TomB
Name: tomB-hha_mRNA -> TomB
Description: Translation of TomB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant tomB-hha_mRNA RNA nd nd
product TomB protein nd nd
csgDEFG_mRNA CsgD
Name: csgDEFG_mRNA -> CsgD
Description: Translation of CsgD
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant csgDEFG_mRNA RNA nd nd
product CsgD protein nd nd
cspI_mRNA CspI
Name: cspI_mRNA -> CspI
Description: Translation of CspI
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant cspI_mRNA RNA nd nd
product CspI protein nd nd
csgDEFG_mRNA CsgG
Name: csgDEFG_mRNA -> CsgG
Description: Translation of CsgG
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant csgDEFG_mRNA RNA nd nd
product CsgG protein nd nd
csgDEFG_mRNA CsgE
Name: csgDEFG_mRNA -> CsgE
Description: Translation of CsgE
Type: translation
Components:
Function Name Type Evidence Reference(s)
product CsgE protein nd nd
reactant csgDEFG_mRNA RNA nd nd



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