RegulonDB RegulonDB

AppY Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
IP6 AppA AppB AppC AppY I(1,2,3,4,5)P5 GDP GTP H2_Ext HyaA HyaB HyaC HyaD HyaE HyaF a menaquinol menaquinone_Ext an ubiquinol an ubiquinol_Ext ubiquinone appCBXA appCBXA_mRNA hyaABCDEF hyaABCDEF_mRNA oxygen oxygen_Ext phosphate AppC AppB HyaA HyaB HyaC AppX


Gensor Unit       
Name: AppY
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0019646 - aerobic electron transport chain
GO:0009061 - anaerobic respiration
GO:0006464 - cellular protein modification process
GO:0071454 - cellular response to anoxia
GO:0016036 - cellular response to phosphate starvation
GO:0016311 - dephosphorylation
Read more >
cellular_component GO:0044569 - [Ni-Fe] hydrogenase complex
GO:0009279 - cell outer membrane
GO:0070069 - cytochrome complex
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
GO:0031237 - intrinsic component of periplasmic side of plasma membrane
GO:0016020 - membrane
Read more >
molecular_function GO:0051538 - 3 iron, 4 sulfur cluster binding
GO:0051539 - 4 iron, 4 sulfur cluster binding
GO:0009055 - electron transfer activity
GO:0004175 - endopeptidase activity
GO:0020037 - heme binding
GO:0052745 - inositol phosphate phosphatase activity
GO:0016151 - nickel cation binding
Read more >
Components: Show/Hide Components Table (25 more...)
Function Name Type
protein AppA protein
protein AppB protein
protein AppC protein
complex AppC-AppB complex
protein AppX protein
protein AppY protein
protein HyaA protein
complex HyaA-HyaB-HyaC complex
protein HyaB protein
protein HyaC protein
protein HyaD protein
protein HyaE protein
protein HyaF protein
simple_molecule I(1,2,3,4,5)P5 simple_molecule
gene appCBXA gene
RNA appCBXA_mRNA RNA
simple_molecule guanosine-diphosphate simple_molecule
simple_molecule guanosine-triphosphate simple_molecule
gene hyaABCDEF gene
RNA hyaABCDEF_mRNA RNA
simple_molecule oxygen_Ext simple_molecule
simple_molecule phosphate simple_molecule
simple_molecule phytate simple_molecule
simple_molecule ubiquinol_Ext simple_molecule
simple_molecule ubiquinone simple_molecule


Reactions       
Showing 17 reactions
AppY appCBXA appCBXA_mRNA
Name: appCBXA -> appCBXA_mRNA
Description: Transcription of transcription unit appCBXA. Reaction activation by AppY.
Type: transcription
Pathway Components: appCBXA - AppY -> appCBXA_mRNA
Components:
Function Name Type Evidence Reference(s)
activator AppY protein nd nd
reactant appCBXA gene nd nd
product appCBXA_mRNA RNA nd nd
AppY hyaABCDEF hyaABCDEF_mRNA
Name: hyaABCDEF -> hyaABCDEF_mRNA
Description: Transcription of transcription unit hyaABCDEF. Reaction activation by AppY.
Type: transcription
Pathway Components: hyaABCDEF - AppY -> hyaABCDEF_mRNA
Components:
Function Name Type Evidence Reference(s)
activator AppY protein nd nd
reactant hyaABCDEF gene nd nd
product hyaABCDEF_mRNA RNA nd nd
appCBXA_mRNA AppC
Name: appCBXA_mRNA -> AppC
Description: Translation of AppC
Type: translation
Pathway Components: appCBXA_mRNA -> AppC
Components:
Function Name Type Evidence Reference(s)
product AppC protein nd nd
reactant appCBXA_mRNA RNA nd nd
AppB + AppC AppC-AppB
Name: AppB + AppC -> AppC-AppB
Description: Reaction transforming AppB, AppC into AppC-AppB
Type: state transition
Pathway Components: AppB + AppC -> AppC-AppB
Components:
Function Name Type Evidence Reference(s)
reactant AppB protein nd nd
reactant AppC protein nd nd
product AppC-AppB complex nd nd
AppC-AppB ubiquinol_Ext + oxygen_Ext ubiquinone
Name: ubiquinol_Ext + oxygen_Ext -> ubiquinone
Description: Transport of ubiquinol_Ext, oxygen_Ext through a bacterial membrane, leading to the presence of ubiquinone inside the cell.
Type: transport
Pathway Components: ubiquinol_Ext + oxygen_Ext - AppC-AppB -> ubiquinone
Components:
Function Name Type Evidence Reference(s)
catalyzer AppC-AppB complex nd nd
reactant oxygen_Ext simple_molecule nd nd
reactant ubiquinol_Ext simple_molecule nd nd
product ubiquinone simple_molecule nd nd
appCBXA_mRNA AppB
Name: appCBXA_mRNA -> AppB
Description: Translation of AppB
Type: translation
Pathway Components: appCBXA_mRNA -> AppB
Components:
Function Name Type Evidence Reference(s)
product AppB protein nd nd
reactant appCBXA_mRNA RNA nd nd
appCBXA_mRNA AppX
Name: appCBXA_mRNA -> AppX
Description: Translation of AppX
Type: translation
Pathway Components: appCBXA_mRNA -> AppX
Components:
Function Name Type Evidence Reference(s)
product AppX protein nd nd
reactant appCBXA_mRNA RNA nd nd
appCBXA_mRNA AppA
Name: appCBXA_mRNA -> AppA
Description: Translation of AppA
Type: translation
Pathway Components: appCBXA_mRNA -> AppA
Components:
Function Name Type Evidence Reference(s)
product AppA protein nd nd
reactant appCBXA_mRNA RNA nd nd
AppA phytate I(1,2,3,4,5)P5 + phosphate
Name: phytate -> I(1,2,3,4,5)P5 + phosphate
Description: Reaction transforming phytate into I(1,2,3,4,5)P5, phosphate
Type: state transition
Pathway Components: phytate - AppA -> I(1,2,3,4,5)P5 + phosphate
Components:
Function Name Type Evidence Reference(s)
catalyzer AppA protein nd nd
product I(1,2,3,4,5)P5 simple_molecule nd nd
product phosphate simple_molecule nd nd
reactant phytate simple_molecule nd nd
AppA guanosine-triphosphate guanosine-diphosphate + phosphate
Name: guanosine-triphosphate -> guanosine-diphosphate + phosphate
Description: Reaction transforming guanosine-triphosphate into guanosine-diphosphate, phosphate
Type: state transition
Pathway Components: guanosine-triphosphate - AppA -> guanosine-diphosphate + phosphate
Components:
Function Name Type Evidence Reference(s)
catalyzer AppA protein nd nd
product guanosine-diphosphate simple_molecule nd nd
reactant guanosine-triphosphate simple_molecule nd nd
product phosphate simple_molecule nd nd
hyaABCDEF_mRNA HyaA
Name: hyaABCDEF_mRNA -> HyaA
Description: Translation of HyaA
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaA
Components:
Function Name Type Evidence Reference(s)
product HyaA protein nd nd
reactant hyaABCDEF_mRNA RNA nd nd
HyaC + HyaB + HyaA HyaA-HyaB-HyaC
Name: HyaC + HyaB + HyaA -> HyaA-HyaB-HyaC
Description: Reaction transforming HyaC, HyaB, HyaA into HyaA-HyaB-HyaC
Type: state transition
Pathway Components: HyaC + HyaB + HyaA -> HyaA-HyaB-HyaC
Components:
Function Name Type Evidence Reference(s)
reactant HyaA protein nd nd
product HyaA-HyaB-HyaC complex nd nd
reactant HyaB protein nd nd
reactant HyaC protein nd nd
hyaABCDEF_mRNA HyaB
Name: hyaABCDEF_mRNA -> HyaB
Description: Translation of HyaB
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaB
Components:
Function Name Type Evidence Reference(s)
product HyaB protein nd nd
reactant hyaABCDEF_mRNA RNA nd nd
hyaABCDEF_mRNA HyaC
Name: hyaABCDEF_mRNA -> HyaC
Description: Translation of HyaC
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaC
Components:
Function Name Type Evidence Reference(s)
product HyaC protein nd nd
reactant hyaABCDEF_mRNA RNA nd nd
hyaABCDEF_mRNA HyaD
Name: hyaABCDEF_mRNA -> HyaD
Description: Translation of HyaD
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaD
Components:
Function Name Type Evidence Reference(s)
product HyaD protein nd nd
reactant hyaABCDEF_mRNA RNA nd nd
hyaABCDEF_mRNA HyaE
Name: hyaABCDEF_mRNA -> HyaE
Description: Translation of HyaE
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaE
Components:
Function Name Type Evidence Reference(s)
product HyaE protein nd nd
reactant hyaABCDEF_mRNA RNA nd nd
hyaABCDEF_mRNA HyaF
Name: hyaABCDEF_mRNA -> HyaF
Description: Translation of HyaF
Type: translation
Pathway Components: hyaABCDEF_mRNA -> HyaF
Components:
Function Name Type Evidence Reference(s)
product HyaF protein nd nd
reactant hyaABCDEF_mRNA RNA nd nd



RegulonDB