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AppY Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
IP6 AppA AppB AppC AppY I(1,2,3,4,5)P5 GDP GTP H2_Ext HyaA HyaB HyaC HyaD HyaE HyaF a menaquinol menaquinone_Ext an ubiquinol an ubiquinol_Ext ubiquinone appCBXA appCBXA_mRNA hyaABCDEF hyaABCDEF_mRNA oxygen oxygen_Ext phosphate AppC AppB HyaA HyaB HyaC AppX


Gensor Unit       
Name: AppY
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0005048 - signal sequence binding
GO:0003824 - catalytic activity
GO:0016020 - membrane
GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016491 - oxidoreductase activity
GO:0022904 - respiratory electron transport chain
GO:0042597 - periplasmic space
GO:0009375 - ferredoxin hydrogenase complex
GO:0016485 - protein processing
GO:0051538 - 3 iron, 4 sulfur cluster binding
GO:0070069 - cytochrome complex
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Components:
Function Name Type
protein AppX protein


Reactions       
Showing 18 reactions
appCBXA appCBXA_mRNA
Name: appCBXA -> appCBXA_mRNA
Description: Transcription of transcription unit appCBXA; reaction activation by AppY.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant appCBXA gene nd nd
product appCBXA_mRNA RNA nd nd
hyaABCDEF hyaABCDEF_mRNA
Name: hyaABCDEF -> hyaABCDEF_mRNA
Description: Transcription of transcription unit hyaABCDEF; reaction activation by AppY.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product hyaABCDEF_mRNA RNA nd nd
reactant hyaABCDEF gene nd nd
hyaABCDEF_mRNA HyaD
Name: hyaABCDEF_mRNA -> HyaD
Description: Translation of HyaD
Type: translation
Components:
Function Name Type Evidence Reference(s)
product HyaD protein nd nd
reactant hyaABCDEF_mRNA RNA nd nd
hyaABCDEF_mRNA HyaE
Name: hyaABCDEF_mRNA -> HyaE
Description: Translation of HyaE
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant hyaABCDEF_mRNA RNA nd nd
product HyaE protein nd nd
appCBXA_mRNA AppB
Name: appCBXA_mRNA -> AppB
Description: Translation of AppB
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant appCBXA_mRNA RNA nd nd
product AppB protein nd nd
AppC + AppB AppC-AppB
Name: AppC + AppB -> AppC-AppB
Description: Reaction transforming AppC, AppB into AppC-AppB
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product AppC-AppB complex nd nd
reactant AppC protein nd nd
reactant AppB protein nd nd
oxygen_Ext + an ubiquinol_Ext ubiquinone
Name: oxygen_Ext + an ubiquinol_Ext -> ubiquinone
Description: Transport of oxygen_Ext, an ubiquinol_Ext through a bacterial membrane, leading to the presence of ubiquinone inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant an ubiquinol_Ext simple molecule nd nd
reactant oxygen_Ext simple molecule nd nd
product ubiquinone simple molecule nd nd
an ubiquinol + oxygen ubiquinone
Name: an ubiquinol + oxygen -> ubiquinone
Description: Reaction transforming an ubiquinol, oxygen into ubiquinone
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant an ubiquinol simple molecule nd nd
reactant oxygen simple molecule nd nd
product ubiquinone simple molecule nd nd
hyaABCDEF_mRNA HyaA
Name: hyaABCDEF_mRNA -> HyaA
Description: Translation of HyaA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product HyaA protein nd nd
reactant hyaABCDEF_mRNA RNA nd nd
HyaA + HyaB + HyaC HyaA-HyaB-HyaC
Name: HyaA + HyaB + HyaC -> HyaA-HyaB-HyaC
Description: Reaction transforming HyaA, HyaB, HyaC into HyaA-HyaB-HyaC
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant HyaA protein nd nd
product HyaA-HyaB-HyaC complex nd nd
reactant HyaB protein nd nd
reactant HyaC protein nd nd
menaquinone_Ext + H2_Ext a menaquinol
Name: menaquinone_Ext + H2_Ext -> a menaquinol
Description: Transport of menaquinone_Ext, H2_Ext through a bacterial membrane, leading to the presence of a menaquinol inside the compartment.
Type: transport
Components:
Function Name Type Evidence Reference(s)
reactant H2_Ext simple molecule nd nd
reactant menaquinone_Ext simple molecule nd nd
product a menaquinol simple molecule nd nd
hyaABCDEF_mRNA HyaF
Name: hyaABCDEF_mRNA -> HyaF
Description: Translation of HyaF
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant hyaABCDEF_mRNA RNA nd nd
product HyaF protein nd nd
hyaABCDEF_mRNA HyaC
Name: hyaABCDEF_mRNA -> HyaC
Description: Translation of HyaC
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant hyaABCDEF_mRNA RNA nd nd
product HyaC protein nd nd
hyaABCDEF_mRNA HyaB
Name: hyaABCDEF_mRNA -> HyaB
Description: Translation of HyaB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product HyaB protein nd nd
reactant hyaABCDEF_mRNA RNA nd nd
appCBXA_mRNA AppC
Name: appCBXA_mRNA -> AppC
Description: Translation of AppC
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant appCBXA_mRNA RNA nd nd
product AppC protein nd nd
appCBXA_mRNA AppA
Name: appCBXA_mRNA -> AppA
Description: Translation of AppA
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant appCBXA_mRNA RNA nd nd
product AppA protein nd nd
IP6 I(1,2,3,4,5)P5 + phosphate
Name: IP6 -> I(1,2,3,4,5)P5 + phosphate
Description: Reaction transforming IP6 into I(1,2,3,4,5)P5, phosphate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
reactant IP6 simple molecule nd nd
product I(1,2,3,4,5)P5 simple molecule nd nd
product phosphate simple molecule nd nd
GTP GDP + phosphate
Name: GTP -> GDP + phosphate
Description: Reaction transforming GTP into GDP, phosphate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product phosphate simple molecule nd nd
reactant GTP simple molecule nd nd
product GDP simple molecule nd nd



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