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AdiY Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
ketoglutarate GABA GABA_Ext AdiA AdiY CO2 GadA GadB GadC GadX GltB GltD GltF L-arginine L-glutamate L-glutamate_Ext L-glutamine adiA adiA_mRNA agmatine ammonia gadAX gadAX_mRNA gadBC gadBC_mRNA gltBDF gltBDF_mRNA GltB GltD


Gensor Unit       
Name: AdiY
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:1902475 - L-alpha-amino acid transmembrane transport
GO:0015807 - L-amino acid transport
GO:0003333 - amino acid transmembrane transport
GO:0019676 - ammonia assimilation cycle
GO:0006527 - arginine catabolic process
GO:0006974 - cellular response to DNA damage stimulus
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cellular_component GO:0005829 - cytosol
GO:0005887 - integral component of plasma membrane
GO:0016020 - membrane
GO:0030288 - outer membrane-bounded periplasmic space
GO:0005886 - plasma membrane
molecular_function GO:0003700 - DNA binding transcription factor activity
GO:0015179 - L-amino acid transmembrane transporter activity
GO:0015297 - antiporter activity
GO:0008792 - arginine decarboxylase activity
GO:0000986 - bacterial-type proximal promoter sequence-specific DNA binding
GO:0004351 - glutamate decarboxylase activity
GO:0004355 - glutamate synthase (NADPH) activity
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Components: Show/Hide Components Table (25 more...)
Function Name Type
protein AdiA protein
protein AdiY protein
simple_molecule CO2 simple_molecule
simple_molecule GABA simple_molecule
simple_molecule GABA_Ext simple_molecule
protein GadA protein
protein GadB protein
protein GadC protein
protein GadX protein
protein GltB protein
protein GltD protein
complex GltD-GltB complex
protein GltF protein
simple_molecule L-glutamate simple_molecule
simple_molecule L-glutamate_Ext simple_molecule
gene adiA gene
RNA adiA_mRNA RNA
simple_molecule agmatine simple_molecule
simple_molecule arginine simple_molecule
gene gadAX gene
RNA gadAX_mRNA RNA
gene gadBC gene
RNA gadBC_mRNA RNA
gene gltBDF gene
RNA gltBDF_mRNA RNA


Reactions       
Showing 16 reactions
AdiY adiA adiA_mRNA
Name: adiA -> adiA_mRNA
Description: Transcription of transcription unit adiA. Reaction activation by AdiY.
Type: transcription
Pathway Components: adiA - AdiY -> adiA_mRNA
Components:
Function Name Type Evidence Reference(s)
activator AdiY protein nd nd
reactant adiA gene nd nd
product adiA_mRNA RNA nd nd
AdiY gadAX gadAX_mRNA
Name: gadAX -> gadAX_mRNA
Description: Transcription of transcription unit gadAX. Reaction activation by AdiY.
Type: transcription
Pathway Components: gadAX - AdiY -> gadAX_mRNA
Components:
Function Name Type Evidence Reference(s)
activator AdiY protein nd nd
reactant gadAX gene nd nd
product gadAX_mRNA RNA nd nd
AdiY gadBC gadBC_mRNA
Name: gadBC -> gadBC_mRNA
Description: Transcription of transcription unit gadBC. Reaction activation by AdiY.
Type: transcription
Pathway Components: gadBC - AdiY -> gadBC_mRNA
Components:
Function Name Type Evidence Reference(s)
activator AdiY protein nd nd
reactant gadBC gene nd nd
product gadBC_mRNA RNA nd nd
AdiY gltBDF gltBDF_mRNA
Name: gltBDF -> gltBDF_mRNA
Description: Transcription of transcription unit gltBDF. Reaction activation by AdiY.
Type: transcription
Pathway Components: gltBDF - AdiY -> gltBDF_mRNA
Components:
Function Name Type Evidence Reference(s)
activator AdiY protein nd nd
reactant gltBDF gene nd nd
product gltBDF_mRNA RNA nd nd
adiA_mRNA AdiA
Name: adiA_mRNA -> AdiA
Description: Translation of AdiA
Type: translation
Pathway Components: adiA_mRNA -> AdiA
Components:
Function Name Type Evidence Reference(s)
product AdiA protein nd nd
reactant adiA_mRNA RNA nd nd
AdiA arginine agmatine + CO2
Name: arginine -> agmatine + CO2
Description: Reaction transforming arginine into agmatine, CO2
Type: state transition
Pathway Components: arginine - AdiA -> agmatine + CO2
Components:
Function Name Type Evidence Reference(s)
catalyzer AdiA protein nd nd
product CO2 simple_molecule nd nd
product agmatine simple_molecule nd nd
reactant arginine simple_molecule nd nd
gadAX_mRNA GadA
Name: gadAX_mRNA -> GadA
Description: Translation of GadA
Type: translation
Pathway Components: gadAX_mRNA -> GadA
Components:
Function Name Type Evidence Reference(s)
product GadA protein nd nd
reactant gadAX_mRNA RNA nd nd
GadA GadB L-glutamate GABA + CO2
Name: L-glutamate -> GABA + CO2
Description: Reaction transforming L-glutamate into GABA, CO2
Type: state transition
Pathway Components: L-glutamate - GadA - GadB -> GABA + CO2
Components:
Function Name Type Evidence Reference(s)
product CO2 simple_molecule nd nd
product GABA simple_molecule nd nd
catalyzer GadA protein nd nd
catalyzer GadB protein nd nd
reactant L-glutamate simple_molecule nd nd
gadAX_mRNA GadX
Name: gadAX_mRNA -> GadX
Description: Translation of GadX
Type: translation
Pathway Components: gadAX_mRNA -> GadX
Components:
Function Name Type Evidence Reference(s)
product GadX protein nd nd
reactant gadAX_mRNA RNA nd nd
gadBC_mRNA GadB
Name: gadBC_mRNA -> GadB
Description: Translation of GadB
Type: translation
Pathway Components: gadBC_mRNA -> GadB
Components:
Function Name Type Evidence Reference(s)
product GadB protein nd nd
reactant gadBC_mRNA RNA nd nd
gadBC_mRNA GadC
Name: gadBC_mRNA -> GadC
Description: Translation of GadC
Type: translation
Pathway Components: gadBC_mRNA -> GadC
Components:
Function Name Type Evidence Reference(s)
product GadC protein nd nd
reactant gadBC_mRNA RNA nd nd
GadC L-glutamate_Ext + GABA_Ext L-glutamate + GABA
Name: L-glutamate_Ext + GABA_Ext -> L-glutamate + GABA
Description: Transport of L-glutamate_Ext, GABA_Ext through a bacterial membrane, leading to the presence of L-glutamate, GABA inside the cell.
Type: transport
Pathway Components: L-glutamate_Ext + GABA_Ext - GadC -> L-glutamate + GABA
Components:
Function Name Type Evidence Reference(s)
product GABA simple_molecule nd nd
reactant GABA_Ext simple_molecule nd nd
catalyzer GadC protein nd nd
product L-glutamate simple_molecule nd nd
reactant L-glutamate_Ext simple_molecule nd nd
gltBDF_mRNA GltB
Name: gltBDF_mRNA -> GltB
Description: Translation of GltB
Type: translation
Pathway Components: gltBDF_mRNA -> GltB
Components:
Function Name Type Evidence Reference(s)
product GltB protein nd nd
reactant gltBDF_mRNA RNA nd nd
GltB + GltD GltD-GltB
Name: GltB + GltD -> GltD-GltB
Description: Reaction transforming GltB, GltD into GltD-GltB
Type: state transition
Pathway Components: GltB + GltD -> GltD-GltB
Components:
Function Name Type Evidence Reference(s)
reactant GltB protein nd nd
reactant GltD protein nd nd
product GltD-GltB complex nd nd
gltBDF_mRNA GltD
Name: gltBDF_mRNA -> GltD
Description: Translation of GltD
Type: translation
Pathway Components: gltBDF_mRNA -> GltD
Components:
Function Name Type Evidence Reference(s)
product GltD protein nd nd
reactant gltBDF_mRNA RNA nd nd
gltBDF_mRNA GltF
Name: gltBDF_mRNA -> GltF
Description: Translation of GltF
Type: translation
Pathway Components: gltBDF_mRNA -> GltF
Components:
Function Name Type Evidence Reference(s)
product GltF protein nd nd
reactant gltBDF_mRNA RNA nd nd



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