RegulonDB RegulonDB

AllR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
(S)-allantoin 3-phospho-D-glycerate AllA AllB AllR AllS D-glycerate Gcl GlxK GlxR Hyi (S)-ureidoglycolate YbbW YbbY allA allA_mRNA allS allS_mRNA allantoate (S)-allantoin gcl-hyi-glxR-ybbW-allB-ybbY-glxK gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA glyoxylate hydroxypyruvate tartronate semialdehyde urea AllR (S)-allantoin AllR glyoxylate


Gensor Unit       
Name: AllR
Description: AllR negatively regulates the expression of genes involved in glyoxylate and allantoin catabolic processes in the presence of allantoin and the absence of glyoxylate. The presence of allantoin and the absence of glyoxylate inhibit the expression of genes related to catabolism, specifically, the conversion of allantoin to urea and glyoxylate and the transformation of glyoxylate to 3-P-D-glycerate.
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): GO:0050662 - coenzyme binding
GO:0008270 - zinc ion binding
GO:0003700 - transcription factor activity, sequence-specific DNA binding
GO:0003824 - catalytic activity
GO:0016020 - membrane
GO:0016491 - oxidoreductase activity
GO:0031388 - organic acid phosphorylation
GO:0046296 - glycolate catabolic process
GO:0005737 - cytoplasm
GO:0016310 - phosphorylation
GO:0008887 - glycerate kinase activity
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Components:
Function Name Type
simple molecule glyoxylate simple molecule


Reactions       
Showing 13 reactions
allA allA_mRNA
Name: allA -> allA_mRNA
Description: Transcription of transcription unit allA; reaction inhibition by AllR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
product allA_mRNA RNA nd nd
reactant allA operon nd nd
allS allS_mRNA
Name: allS -> allS_mRNA
Description: Transcription of transcription unit allS; reaction inhibition by AllR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant allS operon nd nd
product allS_mRNA RNA nd nd
gcl-hyi-glxR-ybbW-allB-ybbY-glxK gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA
Name: gcl-hyi-glxR-ybbW-allB-ybbY-glxK -> gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA
Description: Transcription of transcription unit gcl-hyi-glxR-ybbW-allB-ybbY-glxK; reaction inhibition by AllR.
Type: transcription
Components:
Function Name Type Evidence Reference(s)
reactant gcl-hyi-glxR-ybbW-allB-ybbY-glxK operon nd nd
product gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA RNA nd nd
glyoxylate + AllR AllR-glyoxylate
Name: glyoxylate + AllR -> AllR-glyoxylate
Description: Reaction transforming glyoxylate, AllR into AllR-glyoxylate
Type: state transition
Components:
Function Name Type Evidence Reference(s)
product AllR-glyoxylate complex nd nd
reactant AllR protein nd nd
reactant glyoxylate simple molecule nd nd
gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA Gcl
Name: gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA -> Gcl
Description: Translation of Gcl
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA RNA nd nd
product gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA RNA nd nd
gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA Hyi
Name: gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA -> Hyi
Description: Translation of Hyi
Type: translation
Components:
Function Name Type Evidence Reference(s)
product gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA RNA nd nd
reactant gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA RNA nd nd
gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA GlxR
Name: gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA -> GlxR
Description: Translation of GlxR
Type: translation
Components:
Function Name Type Evidence Reference(s)
product gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA RNA nd nd
reactant gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA RNA nd nd
gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA YbbW
Name: gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA -> YbbW
Description: Translation of YbbW
Type: translation
Components:
Function Name Type Evidence Reference(s)
reactant gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA RNA nd nd
product gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA RNA nd nd
gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA AllB
Name: gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA -> AllB
Description: Translation of AllB
Type: translation
Components:
Function Name Type Evidence Reference(s)
product gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA RNA nd nd
reactant gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA RNA nd nd
gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA YbbY
Name: gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA -> YbbY
Description: Translation of YbbY
Type: translation
Components:
Function Name Type Evidence Reference(s)
product gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA RNA nd nd
reactant gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA RNA nd nd
gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA GlxK
Name: gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA -> GlxK
Description: Translation of GlxK
Type: translation
Components:
Function Name Type Evidence Reference(s)
product gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA RNA nd nd
reactant gcl-hyi-glxR-ybbW-allB-ybbY-glxK_mRNA RNA nd nd
allA_mRNA AllA
Name: allA_mRNA -> AllA
Description: Translation of AllA
Type: translation
Components:
Function Name Type Evidence Reference(s)
product allA_mRNA RNA nd nd
reactant allA_mRNA RNA nd nd
allS_mRNA AllS
Name: allS_mRNA -> AllS
Description: Translation of AllS
Type: translation
Components:
Function Name Type Evidence Reference(s)
product allS_mRNA RNA nd nd
reactant allS_mRNA RNA nd nd



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