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AgaR Genetic Sensory Response Unit in Escherichia coli K-12 genome


Gensor Unit Map          
AgaA AgaB AgaC AgaD AgaI AgaR AgaS AgaV AgaW D-glyceraldehyde 3-phosphate KbaY KbaZ agaR agaR_mRNA agaS-kbaY-agaBCDI agaS-kbaY-agaBCDI_mRNA DHAP kbaZ-agaVWA kbaZ-agaVWA_mRNA tagatose-1,6-bisphosphate KbaY KbaZ


Gensor Unit       
Name: AgaR
Classification:
Groups: Unclassified Gensor Units
Gene Ontology Terms (GO): biological_process GO:0006046 - N-acetylglucosamine catabolic process
GO:0019262 - N-acetylneuraminate catabolic process
GO:0006048 - UDP-N-acetylglucosamine biosynthetic process
GO:1901135 - carbohydrate derivative metabolic process
GO:0005975 - carbohydrate metabolic process
GO:0034219 - carbohydrate transmembrane transport
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cellular_component GO:0005737 - cytoplasm
GO:0005829 - cytosol
GO:0016021 - integral component of membrane
GO:0005887 - integral component of plasma membrane
GO:0005886 - plasma membrane
molecular_function GO:0003677 - DNA binding
GO:0097367 - carbohydrate derivative binding
GO:0043877 - galactosamine-6-phosphate isomerase activity
GO:0004342 - glucosamine-6-phosphate deaminase activity
GO:0016787 - hydrolase activity
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds
GO:0042802 - identical protein binding
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Components: Show/Hide Components Table (23 more...)
Function Name Type
protein AgaA protein
protein AgaB protein
complex AgaB-AgaC-AgaD complex
protein AgaC protein
protein AgaD protein
protein AgaI protein
protein AgaR protein
protein AgaS protein
protein AgaV protein
complex AgaV-AgaW complex
protein AgaW protein
simple_molecule DHAP simple_molecule
protein KbaY protein
complex KbaY-KbaZ complex
protein KbaZ protein
gene agaR gene
RNA agaR_mRNA RNA
gene agaS-kbaY-agaBCDI gene
RNA agaS-kbaY-agaBCDI_mRNA RNA
simple_molecule glyceraldehyde-P simple_molecule
gene kbaZ-agaVWA gene
RNA kbaZ-agaVWA_mRNA RNA
simple_molecule tagatofuranose 1,6-diphosphate simple_molecule


Reactions       
Showing 18 reactions
AgaR agaR agaR_mRNA
Name: agaR -> agaR_mRNA
Description: Transcription of transcription unit agaR. Reaction inhibition by AgaR.
Type: transcription
Pathway Components: agaR - AgaR -> agaR_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor AgaR protein nd nd
reactant agaR gene nd nd
product agaR_mRNA RNA nd nd
AgaR agaS-kbaY-agaBCDI agaS-kbaY-agaBCDI_mRNA
Name: agaS-kbaY-agaBCDI -> agaS-kbaY-agaBCDI_mRNA
Description: Transcription of transcription unit agaS-kbaY-agaBCDI. Reaction inhibition by AgaR.
Type: transcription
Pathway Components: agaS-kbaY-agaBCDI - AgaR -> agaS-kbaY-agaBCDI_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor AgaR protein nd nd
reactant agaS-kbaY-agaBCDI gene nd nd
product agaS-kbaY-agaBCDI_mRNA RNA nd nd
AgaR kbaZ-agaVWA kbaZ-agaVWA_mRNA
Name: kbaZ-agaVWA -> kbaZ-agaVWA_mRNA
Description: Transcription of transcription unit kbaZ-agaVWA. Reaction inhibition by AgaR.
Type: transcription
Pathway Components: kbaZ-agaVWA - AgaR -> kbaZ-agaVWA_mRNA
Components:
Function Name Type Evidence Reference(s)
inhibitor AgaR protein nd nd
reactant kbaZ-agaVWA gene nd nd
product kbaZ-agaVWA_mRNA RNA nd nd
agaS-kbaY-agaBCDI_mRNA AgaS
Name: agaS-kbaY-agaBCDI_mRNA -> AgaS
Description: Translation of AgaS
Type: translation
Pathway Components: agaS-kbaY-agaBCDI_mRNA -> AgaS
Components:
Function Name Type Evidence Reference(s)
product AgaS protein nd nd
reactant agaS-kbaY-agaBCDI_mRNA RNA nd nd
agaS-kbaY-agaBCDI_mRNA KbaY
Name: agaS-kbaY-agaBCDI_mRNA -> KbaY
Description: Translation of KbaY
Type: translation
Pathway Components: agaS-kbaY-agaBCDI_mRNA -> KbaY
Components:
Function Name Type Evidence Reference(s)
product KbaY protein nd nd
reactant agaS-kbaY-agaBCDI_mRNA RNA nd nd
KbaY + KbaZ KbaY-KbaZ
Name: KbaY + KbaZ -> KbaY-KbaZ
Description: Reaction transforming KbaY, KbaZ into KbaY-KbaZ
Type: state transition
Pathway Components: KbaY + KbaZ -> KbaY-KbaZ
Components:
Function Name Type Evidence Reference(s)
reactant KbaY protein nd nd
product KbaY-KbaZ complex nd nd
reactant KbaZ protein nd nd
KbaY-KbaZ tagatofuranose 1,6-diphosphate glyceraldehyde-P + DHAP
Name: tagatofuranose 1,6-diphosphate -> glyceraldehyde-P + DHAP
Description: Reaction transforming tagatofuranose 1,6-diphosphate into glyceraldehyde-P, DHAP
Type: state transition
Pathway Components: tagatofuranose 1,6-diphosphate - KbaY-KbaZ -> glyceraldehyde-P + DHAP
Components:
Function Name Type Evidence Reference(s)
product DHAP simple_molecule nd nd
catalyzer KbaY-KbaZ complex nd nd
product glyceraldehyde-P simple_molecule nd nd
reactant tagatofuranose 1,6-diphosphate simple_molecule nd nd
agaS-kbaY-agaBCDI_mRNA AgaB
Name: agaS-kbaY-agaBCDI_mRNA -> AgaB
Description: Translation of AgaB
Type: translation
Pathway Components: agaS-kbaY-agaBCDI_mRNA -> AgaB
Components:
Function Name Type Evidence Reference(s)
product AgaB protein nd nd
reactant agaS-kbaY-agaBCDI_mRNA RNA nd nd
AgaD + AgaB + AgaC AgaB-AgaC-AgaD
Name: AgaD + AgaB + AgaC -> AgaB-AgaC-AgaD
Description: Reaction transforming AgaD, AgaB, AgaC into AgaB-AgaC-AgaD
Type: state transition
Pathway Components: AgaD + AgaB + AgaC -> AgaB-AgaC-AgaD
Components:
Function Name Type Evidence Reference(s)
reactant AgaB protein nd nd
product AgaB-AgaC-AgaD complex nd nd
reactant AgaC protein nd nd
reactant AgaD protein nd nd
agaS-kbaY-agaBCDI_mRNA AgaC
Name: agaS-kbaY-agaBCDI_mRNA -> AgaC
Description: Translation of AgaC
Type: translation
Pathway Components: agaS-kbaY-agaBCDI_mRNA -> AgaC
Components:
Function Name Type Evidence Reference(s)
product AgaC protein nd nd
reactant agaS-kbaY-agaBCDI_mRNA RNA nd nd
agaS-kbaY-agaBCDI_mRNA AgaD
Name: agaS-kbaY-agaBCDI_mRNA -> AgaD
Description: Translation of AgaD
Type: translation
Pathway Components: agaS-kbaY-agaBCDI_mRNA -> AgaD
Components:
Function Name Type Evidence Reference(s)
product AgaD protein nd nd
reactant agaS-kbaY-agaBCDI_mRNA RNA nd nd
agaS-kbaY-agaBCDI_mRNA AgaI
Name: agaS-kbaY-agaBCDI_mRNA -> AgaI
Description: Translation of AgaI
Type: translation
Pathway Components: agaS-kbaY-agaBCDI_mRNA -> AgaI
Components:
Function Name Type Evidence Reference(s)
product AgaI protein nd nd
reactant agaS-kbaY-agaBCDI_mRNA RNA nd nd
kbaZ-agaVWA_mRNA KbaZ
Name: kbaZ-agaVWA_mRNA -> KbaZ
Description: Translation of KbaZ
Type: translation
Pathway Components: kbaZ-agaVWA_mRNA -> KbaZ
Components:
Function Name Type Evidence Reference(s)
product KbaZ protein nd nd
reactant kbaZ-agaVWA_mRNA RNA nd nd
kbaZ-agaVWA_mRNA AgaV
Name: kbaZ-agaVWA_mRNA -> AgaV
Description: Translation of AgaV
Type: translation
Pathway Components: kbaZ-agaVWA_mRNA -> AgaV
Components:
Function Name Type Evidence Reference(s)
product AgaV protein nd nd
reactant kbaZ-agaVWA_mRNA RNA nd nd
AgaV + AgaW AgaV-AgaW
Name: AgaV + AgaW -> AgaV-AgaW
Description: Reaction transforming AgaV, AgaW into AgaV-AgaW
Type: state transition
Pathway Components: AgaV + AgaW -> AgaV-AgaW
Components:
Function Name Type Evidence Reference(s)
reactant AgaV protein nd nd
product AgaV-AgaW complex nd nd
reactant AgaW protein nd nd
kbaZ-agaVWA_mRNA AgaW
Name: kbaZ-agaVWA_mRNA -> AgaW
Description: Translation of AgaW
Type: translation
Pathway Components: kbaZ-agaVWA_mRNA -> AgaW
Components:
Function Name Type Evidence Reference(s)
product AgaW protein nd nd
reactant kbaZ-agaVWA_mRNA RNA nd nd
kbaZ-agaVWA_mRNA AgaA
Name: kbaZ-agaVWA_mRNA -> AgaA
Description: Translation of AgaA
Type: translation
Pathway Components: kbaZ-agaVWA_mRNA -> AgaA
Components:
Function Name Type Evidence Reference(s)
product AgaA protein nd nd
reactant kbaZ-agaVWA_mRNA RNA nd nd
agaR_mRNA AgaR
Name: agaR_mRNA -> AgaR
Description: Translation of AgaR
Type: translation
Pathway Components: agaR_mRNA -> AgaR
Components:
Function Name Type Evidence Reference(s)
product AgaR protein nd nd
reactant agaR_mRNA RNA nd nd



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