RegulonDB RegulonDB 10.0: Downloadable High-throughput datasets

Downloadable High-throughput datasets


Our curation is focused on identifying the objects (sites, promoters, interactions) that satisfy a set of criteria regarding confidence and interpretability, in order to upload them in RegulonDB together with all existing knowledge. When these criteria are not satisfied, then we simply offer the data as datasets. This page contains the catalog of the HT datasets.




  ID Type Name|Title TF Effect Regulated Object TFBS left position TFBS right position DNA sequence Method Reference
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce gsiA, gsiB, gsiC, gsiD, iaaA 865743 866455 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce ptsG 1156739 1157531 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress cirA 2244605 2245268 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress mntH 2510813 2511330 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress csrB, truC, yqcA, yqcC 2922199 2922704 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress glcA, glcB, glcD, glcE, glcF, glcG 3125852 3126560 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce dnaG, rpoD, rpsU 3208503 3209120 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce leuU, secG 3320118 3320918 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce rnpA, rpmH 3882060 3882705 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce fabR, yijD 4158474 4159090 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd feaR 1445043 1445306 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd serT, yccA 1030559 1031021 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd uxaB 1608517 1608984 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd uspC 1977375 1977654 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd insA-5, insB-5 1977375 1977654 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd suhB 2661207 2661749 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd gltB, gltD, gltF 3351922 3352747 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd phoH 1084046 1084376 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yeiG 2241347 2241935 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd gcvA 2940499 2940974 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yjjY 4637994 4639032 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress ygjG 3216895 3217770 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce fdhE, fdoG, fdoH, fdoI 4083326 4083676 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce fsaA 862364 862943 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd rstA, rstB 1679651 1680231 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd ypdA, ypdB, ypdC 2496255 2496563 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd gcvA 2940428 2940878 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yhjX 3710036 3710417 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yjiS 4569465 4569782 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd lpcA 243079 243744 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd insA-5, insB-5 1977346 1977771 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yecR 1985963 1986293 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd ubiA, ubiC 4250255 4250645 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd phnC, phnD, phnE, phnF, phnG, phnH, phnI, phnJ, phnK, phnL, phnM, phnN, phnO, phnP 4323037 4323628 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd ndh 1165276 1165541 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yffQ, yffR 2561187 2561595 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd trmJ 2661207 2661749 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd ssrA 2753425 2754054 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd ygjD 3208503 3209120 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd maoC 1451593 1452006 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd ydgC 1679651 1680231 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yfbM 2384877 2385185 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd cycA 4427459 4427784 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yacH 131272 131772 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd pncB 989551 989881 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd rmf 1014840 1015615 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd rutR 1072946 1073509 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce ybjX 917844 918319 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce flhC, flhD 1976263 1976504 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce infB, metY, nusA, pnp, rbfA, rimP, rpsO, truB 3316172 3316576 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress cspA, yiaG 3717470 3718158 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd rutA, rutB, rutC, rutD, rutE, rutF, rutG 1072984 1073676 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yfdZ 2496347 2496888 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress moaA, moaB, moaC, moaD, moaE 815916 816683 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd caiA, caiB, caiC, caiD, caiE, caiT 41673 42043 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd cydA, cydB 770022 770651 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd ybiU 858148 858715 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd rutR 1072984 1073676 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd fumC 1684671 1685000 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yfdZ 2496255 2496563 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd uxaA, uxaC 3242567 3243093 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd feoA, feoB, feoC 3537747 3538156 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yjiR 4569465 4569782 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd kdpA, kdpB, kdpC, kdpF 727885 728489 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd putP 1078134 1079013 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd maoC 1451672 1452114 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd exuT 3242529 3242792 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd pck 3530384 3530763 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd dcuB, fumB 4346724 4347078 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yjiS 4569507 4569903 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress glcA, glcB, glcD, glcE, glcF, glcG 3125935 3126447 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress acs, actP, yjcH 4285048 4285577 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress lacI, mhpR 367853 368107 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress sdhA, sdhB, sdhC, sdhD, sucA, sucB, sucC, sucD 753888 754426 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd uxaB 1608401 1608967 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd uspC 1977346 1977771 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yffQ, yffR 2561262 2561604 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd avtA 3737340 3737681 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd ybiW, ybiY 862364 862943 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd guaA, guaB 2631812 2632525 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd pnp, rpsO 3309193 3309930 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd psrO 3309193 3309930 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce rimO 877089 877801 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce rplY 2280151 2280914 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce xseA 2631812 2632525 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce mutM, rpmB, rpmG 3809457 3810128 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce nrfA, nrfB, nrfC, nrfD, nrfE, nrfF, nrfG 4285290 4285644 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yceI, yceJ 1118029 1118304 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd nudJ, rluE 1194146 1194605 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd ycjG 1386238 1387113 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd proL 2284173 2284656 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yhjX 3710141 3710558 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress betA, betB, betI 328313 328569 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress lacI, mhpR 367666 368120 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce leuA, leuB, leuC, leuD, leuL 83468 83931 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress mhpA, mhpB, mhpC, mhpD, mhpE, mhpF 367853 368107 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce ybhK 815916 816683 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yncD 1520897 1521355 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yeiQ 2263947 2264426 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd gcvB 2940428 2940878 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd fadH 3229662 3230012 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd lldD, lldP, lldR 3775016 3775341 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd nepI 3839670 3839963 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yjiJ 4560494 4560948 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd ddpA, ddpB, ddpC, ddpD, ddpF, ddpX 1560974 1561381 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA conflict hemG, pepQ, trkH, yigZ 4028847 4029206 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress bssR 877089 877801 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress macA, macB 917844 918319 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce infA, serW 924976 925842 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress gapA, yeaD 1860590 1861003 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress aer 3216816 3217970 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd dhaK, dhaL, dhaM 1249988 1250500 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce fabD, fabG, fabH, plsX, psrD, rpmF, yceD 1145843 1146734 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK 1451672 1452114 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce hybA, hybB, hybC, hybD, hybE, hybF, hybG, hybO, yghW 3144302 3144752 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce nlpI 3306347 3306826 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce rplU, rpmA 3331135 3331514 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress hemG, pepQ, trkH, yigZ 4028951 4029389 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress acs, actP, yjcH 4285290 4285644 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd ndh 1165381 1165681 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd dhaR 1249988 1250500 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd feaB 1445043 1445306 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK 1451593 1452006 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd puuA 1358699 1359349 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd manA 1686396 1686946 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yfbM 2384706 2385289 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd argG 3316172 3316576 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA conflict glpE, glpG, glpR 3559725 3560000 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce nrfA, nrfB, nrfC, nrfD, nrfE, nrfF, nrfG 4285048 4285577 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce fkpB, ileS, ispH, lspA, ribF 21121 21465 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA induce rpsT 21121 21465 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA repress fiu, mcbA 840676 841126 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd azuC, isrB, yecJ 1985963 1986293 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd rutA, rutB, rutC, rutD, rutE, rutF, rutG 1072946 1073509 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd ygjG 3216816 3217970 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yhcC 3351922 3352747 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd dnaA, dnaN, recF 3882060 3882705 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yncE 1520897 1521355 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd hcaR 2666749 2667128 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd hcaB, hcaC, hcaD, hcaE, hcaF 2666749 2667128 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd exuT 3242567 3243093 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yieE, yieF 3891618 3891908 nd nd 24699140
  HTRI00000005 TF Microarray-ArcA-24699140 ArcA nd yigF, yigG 4001099 4001479 nd nd 24699140


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