RegulonDB RegulonDB 10.0: Downloadable High-throughput datasets

Downloadable High-throughput datasets


Our curation is focused on identifying the objects (sites, promoters, interactions) that satisfy a set of criteria regarding confidence and interpretability, in order to upload them in RegulonDB together with all existing knowledge. When these criteria are not satisfied, then we simply offer the data as datasets. This page contains the catalog of the HT datasets.




  ID Type Name|Title TF Effect Regulated Object TFBS left position TFBS right position DNA sequence Method Reference
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yobD 1902973 1902984 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yebS 1914395 1914407 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yebA 1939319 1939331 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yffS 2562639 2562652 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yfjI 2757997 2758009 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd ypjA 2776793 2776804 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd ptrA 2956062 2956074 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd arcB 3348977 3348990 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd asd 3572840 3572852 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd fdhE 4078078 4078086 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd fdhE 4078871 4078883 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd actP, yjcH, acs 4281654 4281666 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd map 189588 189600 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd recN 2749874 2749885 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd FhuA, fhuC, fhuD, fhuB 169030 169042 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd erpA, yadS 177013 177025 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd lafU 250226 250238 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd ybeQ 674999 675010 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd gmr 1343154 1343164 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yjhU 4517991 4518002 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd tqsA 1672497 1672509 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yoaD 1897567 1897579 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd flk 2436392 2436404 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yfcU, yfcT, yfcS, yfcR, yfcQ, yfcP, yfcO 2447514 2447526 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yfcU, yfcT, yfcS, yfcR, yfcQ, yfcP, yfcO 2447571 2447583 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yfgF 2626662 2626674 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd dacB, obgE 3328514 3328526 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd gadX 3663209 3663221 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yhjE 3673472 3673485 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yjdQ 4360277 4360289 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd treBC 4463133 4463145 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd nagB, nagA, nagC, nagD 701068 701080 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd aspC 984923 984935 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd sdiA 1994865 1994877 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd recN 2749855 2749867 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd sodA 4098730 4098742 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd cdh 4107862 4107875 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd sfmF 562545 562557 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd sdhC, sdhD, sdhA, sdhB 756236 756248 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd paaA, paaB, paaC, paaD, paaE, paaF, paaG, paaH, paaI, paaJ, paaK 1458523 1458536 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yjhI, yjhH 4523968 4523979 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd pepD 255803 255815 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yhaJ 3252242 3252254 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yrbL 3346333 3346345 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur repress yncE 1521237 1521250 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur repress yddA, yddB 1577361 1577373 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd sfmA 557825 557837 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd YbgI, YbgJ, YbgK, YbgL, nei 745799 745809 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd ybiT, ybiU 857017 857029 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd rimO 876433 876451 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd pgaB 1088831 1088843 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd ymgE 1244166 1244179 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd ldhA 1440085 1440097 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd ydgK, rsxA, rsxB, rsxC, rsxD, rsxG, rsxE, nth 1709579 1709591 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd fliC 2000923 2000935 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd arnB, arnC, arnA, arnD, arnT, arnE, arnF 2367609 2367621 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd ygaQ_2 2784757 2784770 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd nanR 3372152 3372164 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yihX, yihY, dtd, yiiD 4073667 4073679 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd qor 4261485 4261496 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yjgI 4472036 4472048 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yeaP 1876432 1876445 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yobD 1902987 1902998 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd norV, norW 2831996 2832009 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd insJ, insK 3719709 3719721 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd xylF, xylG, xylH, xylR 3731495 3731513 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd mutM 3808959 3808970 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd rmuC 4015364 4015376 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yihN 4060503 4060515 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd ygfK, ssnA 3013882 3013893 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yhhK 3595840 3595851 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur repress yoeA 2066626 2066638 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd araC 70524 70536 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd dmsA, dmsB, dmsC 942141 942153 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd ycgG 1216821 1216833 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd ymgI 1222347 1222358 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd fepB 623960 623972 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd ompR 3534806 3534818 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd emrD 3851855 3851867 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd sodA 4098723 4098735 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur repress yddA, yddB 1577347 1577359 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur repress yoeA 2066588 2066600 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd panD 146494 146507 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd ybeQ 674980 674992 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd pgaB 1088811 1088823 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd ydgK, rsxA, rsxB, rsxC, rsxD, rsxG, rsxE, nth 1709597 1709610 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd ydiV 1790006 1790018 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yfcV 2454145 2454157 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd csrB 2922396 2922408 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yhhZ, yrhA 3580810 3580822 nd nd 25222563
  HTRI00000008 TF RNA-seq-Fur-25222563 Fur nd yjbJ 4257227 4257240 nd nd 25222563


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