RegulonDB RegulonDB 10.0: Downloadable High-throughput datasets

Downloadable High-throughput datasets


Our curation is focused on identifying the objects (sites, promoters, interactions) that satisfy a set of criteria regarding confidence and interpretability, in order to upload them in RegulonDB together with all existing knowledge. When these criteria are not satisfied, then we simply offer the data as datasets. This page contains the catalog of the HT datasets.




  ID Type Name|Title TF Effect Regulated Object TFBS left position TFBS right position DNA sequence Method Reference
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd metK 3084574 3084607 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd metK 3084677 3084707 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd slp, dctR 3651832 3651858 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd slp, dctR 3651968 3651984 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd gadE 3655775 3655798 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd gadW 3662883 3662918 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd yhiS_1 3649418 3649455 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd gcvT, gcvH, gcvP 3048982 3049002 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd yqeK, ygeF 2988594 2988613 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd ygeH 2990931 2990949 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd blr 1702520 1702552 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd gadA 3665727 3665747 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd uspA, uspB 3637850 3637894 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd slp, dctR 3651946 3651966 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd gadE 3655811 3655842 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd gadW 3662816 3662836 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd gadA 3665749 3665768 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd yiiS, uspD 4110801 4110821 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd yfaL 2342146 2342173 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd yfaL 2342169 2342207 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd gcvT, gcvH, gcvP 3048878 3048906 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd asnS 987539 987552 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd ybaS, ybaT 510790 510823 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd rspAB 1653263 1653281 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd gadE 3655754 3655785 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd nhaR 18012 18042 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd metK 3084478 3084504 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd slp, dctR 3651850 3651872 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd gadE 3655735 3655770 nd nd 28526842
  HTRI00000009 TF RNA-seq-OmpR-28526842 OmpR nd yagN 294529 294546 nd nd 28526842


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