RegulonDB RegulonDB 10.0: Downloadable High-throughput datasets

Downloadable High-throughput datasets


Our curation is focused on identifying the objects (sites, promoters, interactions) that satisfy a set of criteria regarding confidence and interpretability, in order to upload them in RegulonDB together with all existing knowledge. When these criteria are not satisfied, then we simply offer the data as datasets. This page contains the catalog of the HT datasets.




  ID Type Name|Title TF Effect Regulated Object TFBS left position TFBS right position DNA sequence Method Reference
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd yfaL 2342146 2342173 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd ygeH 2990931 2990949 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd gcvTHP 3048878 3048906 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd gcvTHP 3048982 3049002 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd gcvTHP 3084478 3084504 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd yhiS_1 3651832 3651858 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX induce slp-dctR 3651946 3651966 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd gadA 3665727 3665747 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd gadA 3665749 3665768 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd yiiS-uspD 4110801 4110821 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd yagN 294529 294546 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd asnS 1570011 1570051 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX repress ydeN 1580799 1580824 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd metK 3084677 3084707 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd uspA/uspB 3637850 3637894 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd nhaR 18012 18042 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX repress dtpA 1710534 1710554 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd metK 3084574 3084607 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX induce slp-dctR 3651863 3651894 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX induce slp-dctR 3655735 3655770 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd gadE 3655754 3655785 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd gadE 3662816 3662836 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX repress gadW 3662857 3662888 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX repress gadW 3662883 3662918 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd ybaST 510790 510823 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX induce gadBC 1570261 1570301 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX repress ydeN 1580632 1580662 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd rspAB 1653263 1653281 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd blr 1702520 1702552 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd yqeK/ygeF 2988594 2988613 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd yhiS_1 3651850 3651872 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX induce slp-dctR 3651968 3651984 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd gadE 3655811 3655842 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd asnS 987539 987552 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX induce gadBC 1570302 1570342 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX induce gadBC 1570345 1570385 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX repress ynfB-speG 1653697 1653730 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX repress asr 1669352 1669375 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd yfaL 2342169 2342207 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd yhiS_1 3649418 3649455 nd nd 26258987
  HTRI00000182 TF CHIP-SV, MSI-GadX-26258987 GadX nd gadE 3655775 3655798 nd nd 26258987


RegulonDB