RegulonDB RegulonDB 10.0: Downloadable High-throughput datasets

Downloadable High-throughput datasets


Our curation is focused on identifying the objects (sites, promoters, interactions) that satisfy a set of criteria regarding confidence and interpretability, in order to upload them in RegulonDB together with all existing knowledge. When these criteria are not satisfied, then we simply offer the data as datasets. This page contains the catalog of the HT datasets.




  ID Type Name|Title TF Effect Regulated Object TFBS left position TFBS right position DNA sequence Method Reference
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS nd acrZ 793968 794000 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS induce ybjC-nfsA 890041 890073 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS induce acnA 1333739 1333771 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS induce ydbK 1438892 1438924 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS induce fumC 1684698 1684730 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS induce lpxC 106521 106553 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS induce ybaO-mdlA-mdlB 467497 467529 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS nd acrA-acrB 484980 485012 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS induce nepI 3839772 3839804 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS induce sodA 4098723 4098755 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS nd soxS 4275427 4275459 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS repress rob 4633379 4633411 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS nd ycgZ-ymgA-ariR-ymgC 1214895 1214926 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS induce nhoA 1532018 1532050 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS induce nfo 2248786 2248818 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS nd micF 2311051 2311083 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS induce yrbL 3346444 3346476 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS nd yjcB 4273082 4273114 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS induce zwf 1934435 1934467 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS induce fpr 4112564 4112596 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS nd uof-fur 710099 710131 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS induce fldA 710791 710823 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS induce ribA 1337265 1337297 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS nd micF 2310972 2311004 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS nd ypeC 2508897 2508929 nd nd 26279566
  HTRI00000224 TF CHIP-SV, MSI-SoxS-26279566 SoxS nd aroF-tyrA 2739198 2739230 nd nd 26279566


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