RegulonDB RegulonDB 10.0: Downloadable High-throughput datasets

Downloadable High-throughput datasets


Our curation is focused on identifying the objects (sites, promoters, interactions) that satisfy a set of criteria regarding confidence and interpretability, in order to upload them in RegulonDB together with all existing knowledge. When these criteria are not satisfied, then we simply offer the data as datasets. This page contains the catalog of the HT datasets.




  ID Type Name|Title TF Effect Regulated Object TFBS left position TFBS right position DNA sequence Method Reference
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yqeL/yqeK/ygeF ygeG/ygeH 2987500 2990649 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd tusB 3472750 3472899 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd aspA 4366056 4366171 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ydbK 1438800 1439049 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ydbJ 1438800 1439049 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd cybB 1488650 1488949 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd lpxP 2493450 2493549 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yajO 437329 437469 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd insH-2 574850 575099 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd tfaR 1430250 1430549 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd lpp 1755350 1755499 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yobF 1905547 1905784 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd alaE 2797100 2797249 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ygeI 2991100 2992299 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd istR-1/istR-2 3851100 3851399 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd priA 4124850 4125049 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ychH 1257750 1258199 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd rssA 1288250 1288399 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd lpxC 106436 106616 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ycgH 1219400 1219949 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ycgB 1236420 1236526 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd osmB 1341304 1341480 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ydcS 1509526 1509697 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ryeB 1921150 1921299 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd wbbI 2103850 2104199 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd wbbH 2104550 2105599 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd tfaS 2468677 2468882 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd csiE 2663364 2663501 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd raiA 2734910 2735081 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd csrA 2817227 2817395 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ygdH 2924252 2924370 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd omrA 2974153 2974278 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd sibC 3054792 3054952 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd scpA 3058600 3058749 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd rpoH 3598950 3599099 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ytfJ 4437000 4437349 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yjhR (pseudogene) 4533950 4534049 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd pth 1257750 1258199 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd dsrB 2022850 2023149 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd hepA 63400 63538 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd insEF-2 392250 392349 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd tomB 479920 480115 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd uxaB 1608700 1608949 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ydgA 1687744 1687907 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd bsmA 4414650 4414899 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yodD 2022850 2023149 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yfgG 2627100 2627399 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd rpmE 4124850 4125049 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd sdaA 1894663 1894896 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yebW 1920033 1920203 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yacH 130200 130349 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yaiT 390600 390799 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ybcW 579200 579449 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd zitB 783131 783309 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd pflB 951282 951339 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd prs 1260424 1260539 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ygeK 2992550 2992699 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd osmE 1820250 1820349 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yfgF 2627100 2627399 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd queE 2903350 2903649 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yjfP 4414650 4414899 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd cysQ 4434400 4434749 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yaiA 406100 406199 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ybiI 837550 837849 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd dps 848050 848349 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ymgC 1215900 1216399 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ynhG 1756820 1756885 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yodC 2026384 2026505 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yehE 2190800 2190949 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yohF 2225279 2225390 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ssrA 2753502 2753707 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yfjJ 2758300 2758999 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd uspB 3637750 3637949 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd proK 3706750 3706999 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yjdC 4361287 4361432 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd fusA 3471311 3471368 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ychJ 1288250 1288399 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd thrW 262040 262202 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ansP 1524000 1524199 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd cpdB 4434400 4434749 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd nadE 1820250 1820349 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ygcG 2903350 2903649 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd tisB 3851100 3851399 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd erfK 2061261 2061484 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yggE 3066050 3066149 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd ygjR 3235233 3235381 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yehE 2190700 2190799 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd emrK 2480950 2481249 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yhcD 3362550 3362699 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd (gapC_1) 1488650 1488949 nd nd 26020590
  HTRI00000368 TF CHIP-Sigma38-26020590 Sigma38 nd yfdY 2493450 2493549 nd nd 26020590


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