RegulonDB RegulonDB 10.5: Downloadable High-throughput datasets

Downloadable High-throughput datasets


Our curation is focused on identifying the objects (sites, promoters, interactions) that satisfy a set of criteria regarding confidence and interpretability, in order to upload them in RegulonDB together with all existing knowledge. When these criteria are not satisfied, then we simply offer the data as datasets. This page contains the catalog of the HT datasets.




  ID Type Name|Title TF Effect Regulated Object TFBS left position TFBS right position DNA sequence Method Reference
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ydcJ 1492134 1493312 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ydhQ 1741266 1741895 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yniB 1805714 1806721 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd nfo 2247640 2248862 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ygeK 2991878 2992482 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ais 2371335 2371516 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd tomB 479862 480029 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yrbL 3347774 3347983 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yqcC 2924092 2924349 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd focA 953689 954095 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd cysJ 2889920 2890236 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd leuO nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd putP nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd cspI nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd rcsD nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd nrdA nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd arnB nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd csdA nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yhhH nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yjjP nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yidZ 1805714 1806721 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd putA 1078912 1079146 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd putP 1078912 1079146 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd csgB 1103125 1103377 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd elbA 1213769 1213987 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ymgC 1215858 1215971 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ynbA 1475474 1475645 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yncH 1524888 1524964 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd glvG 3860010 3859196 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd fimB 4537524 4538980 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yedN nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd phoE nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd potF nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yodB nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ais nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd rfaB nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ubiC nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd nanC nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd fimE nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yjjQ nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yeiE 2247640 2248862 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yqeI 2991878 2992482 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd deoD 4617574 4618906 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd arnB 2371335 2371516 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ychF 1260215 1260441 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd mcrA 1209462 1209569 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd inaA 2347494 2347673 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yfaH 2347494 2347673 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yjjP 4600881 4601500 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yjjQ 4600881 4601500 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ribC 1741266 1741895 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd putA nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd elbA nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ychF nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ynbA nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ydeJ nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd napF nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ompC nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd inaA nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ygcE nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd csrB nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd mlaF nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yrbG nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd bglF 3903621 3903590 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd bglG 3903621 3903590 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd eptA 2371335 2371516 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd csgD 1103125 1103377 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yiaY 3757336 3757518 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ligT 162031 162105 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd cmoA 1950685 1950726 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd agaS 3279647 3279998 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd nfrA 590177 592551 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd proB nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd csgB nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd eco nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yfaL nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yrbL nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd rtcB nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd rfaB 3802160 3803176 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd metN 222645 223771 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd rrsH 222645 223771 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yddA 1577366 1577657 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd cspI 1636691 1637054 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd queD 2889920 2890236 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd agaB 3282025 3282192 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd nanC 4537524 4538980 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd queD 590177 592551 nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd leuA nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd dinJ nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yafL nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd tomB nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd cydA nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd csgD nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ydeI nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ugd nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd yfaH nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd ygdI nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd eptA nd nd nd nd 22442305
  HTRI00000445 TF gSELEX-BasR-22442305 BasR nd fimB nd nd nd nd 22442305


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