RegulonDB RegulonDB 10.5: Downloadable High-throughput datasets

Downloadable High-throughput datasets


Our curation is focused on identifying the objects (sites, promoters, interactions) that satisfy a set of criteria regarding confidence and interpretability, in order to upload them in RegulonDB together with all existing knowledge. When these criteria are not satisfied, then we simply offer the data as datasets. This page contains the catalog of the HT datasets.




  ID Type Name|Title TF Effect Regulated Object TFBS left position TFBS right position DNA sequence Method Reference
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd bipA 4058444 4058461 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd fabF 1151764 1151781 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd rplF 3446059 3446076 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd ddlA 400917 400934 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd yodB 2042143 2042160 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd yffQ 2563507 2563524 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd rimP 3318086 3318103 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd arrS 3658143 3658160 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd gadW 3664649 3664666 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd gadW 3664806 3664823 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd rplM 3378646 3378663 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd rpsK 3442004 3442021 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd hdeA 3656995 3657012 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd hdeA 3657027 3657044 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd arrS 3658325 3658342 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd rrsE 4207908 4207925 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd pgi 4233531 4233548 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd uxaB 1610992 1611009 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd yefM 2090005 2090022 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd nuoA 2405144 2405161 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd rrlH 225587 225604 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd iraP 401238 401255 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd rpmI 1800347 1800364 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd sdsR 1923325 1923342 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd rpsP 2746239 2746256 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd ibsC 3057258 3057275 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd rpmJ 3442951 3442968 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd rplE 3447393 3447410 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd dctR 3654603 3654620 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd arrS 3658276 3658293 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd gadX 3665718 3665735 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd rpsJ 3453475 3453492 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd hdeA 3656734 3656751 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd ilvG_1 3950178 3950195 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd rrlA 4037347 4037364 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd coaA 4175240 4175257 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd yjtD 4640620 4640637 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd iraP 401199 401216 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd sdhC 755106 755123 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd yccA 1031721 1031738 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd ydgD 1671800 1671817 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd kgtP 2725853 2725870 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd dnaG 3211075 3211092 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd yrbN 3308191 3308208 nd nd 26258987
  HTRI00000829 TF ChIP-exo|RSATgadE.all.regulon26258987 GadE nd rplN 3448490 3448507 nd nd 26258987


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