RegulonDB RegulonDB 10.5: Downloadable High-throughput datasets

Downloadable High-throughput datasets


Our curation is focused on identifying the objects (sites, promoters, interactions) that satisfy a set of criteria regarding confidence and interpretability, in order to upload them in RegulonDB together with all existing knowledge. When these criteria are not satisfied, then we simply offer the data as datasets. This page contains the catalog of the HT datasets.




  ID Type Name|Title TF Effect Regulated Object TFBS left position TFBS right position DNA sequence Method Reference
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd aspU 228707 228726 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd dtpA 1712372 1712391 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd queF 2925025 2925044 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd mreB 3401176 3401195 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd rplQ 3440113 3440132 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd rpsK 3442004 3442023 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd gadW 3664808 3664827 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd xanP 3828851 3828870 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd rrsC 3941870 3941889 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd trpT 3946651 3946670 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd ilvM 3952184 3952203 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd rrfB 4171588 4171607 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd pheU 4362717 4362736 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd ycaI 964007 964026 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd PseudoGene 1299330 1299349 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd rplY 2282533 2282552 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd micF 2313097 2313116 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd rrfG 2726219 2726238 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd ftsH 3327102 3327121 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd mutM 3811416 3811435 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd rrfA 4040467 4040486 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd gadF 3658707 3658726 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd gadF 3658747 3658766 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd yefM 2090009 2090028 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd rpmJ 3442818 3442837 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd rpsH 3446566 3446585 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd rpmC 3448984 3449003 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd yjaA 4212991 4213010 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd ridA 4470963 4470982 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd arcA 4640522 4640541 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd gltA 754680 754699 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd valT 780484 780503 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd PseudoGene 1299446 1299465 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd znuC 1942365 1942384 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd yeiQ 2266182 2266201 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd csrA 2819308 2819327 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd sibC 3056900 3056919 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd pheV 3110306 3110325 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd dctR 3654678 3654697 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd hdeA 3656911 3656930 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd arrS 3658307 3658326 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd gadX 3666096 3666115 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd dppA 3708062 3708081 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd ryeA 1923054 1923073 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd yffQ 2563644 2563663 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd yhcC 3354136 3354155 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd gltF 3360934 3360953 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd rrsD 3428681 3428700 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd rhoL 3966180 3966199 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd zapB 4118563 4118582 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd arrS 3658061 3658080 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd gadF 3658878 3658897 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd gadW 3664848 3664867 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd rnpA 3884217 3884236 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd spf 4049924 4049943 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd fimB 4540880 4540899 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd yjiR 4571925 4571944 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd micF 2312871 2312890 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd alaA 2407318 2407337 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd kgtP 2725718 2725737 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd sibD 3194787 3194806 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd uxaC 3244823 3244842 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd thrV 3423817 3423836 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd secY 3444228 3444247 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd rpoH 3600686 3600705 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd skp 200551 200570 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd ppiD 461831 461850 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd rhtA 850360 850379 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd ycaM 947095 947114 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd slp 3653845 3653864 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd slp 3653910 3653929 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd slp 3653943 3653962 nd nd 26258987
  HTRI00000830 TF ChIP-exo|RSATgadW.all.regulon26258987 GadW nd dctR 3654602 3654621 nd nd 26258987


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