RegulonDB RegulonDB 10.5: Downloadable High-throughput datasets

Downloadable High-throughput datasets


Our curation is focused on identifying the objects (sites, promoters, interactions) that satisfy a set of criteria regarding confidence and interpretability, in order to upload them in RegulonDB together with all existing knowledge. When these criteria are not satisfied, then we simply offer the data as datasets. This page contains the catalog of the HT datasets.




  ID Type Name|Title TF Effect Regulated Object TFBS left position TFBS right position DNA sequence Method Reference
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd yrbL3 3349031 3349049 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd sspA 3377519 3377537 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd tsaC 3431706 3431724 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd tsgA 3492385 3492403 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd yibS 3768376 3768394 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd mcbR 1520316 1520334 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd mgrR 1622945 1622963 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd fliA 2002095 2002113 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd micF 2312909 2312927 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd nuoA 2405232 2405250 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd hisS 2640586 2640604 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd yadG 142649 142667 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd waaF 3794876 3794894 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd ibpA 3867725 3867743 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd intB 4496492 4496510 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd ytjA 4611979 4611997 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd insB-5 1979311 1979329 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd ptsI 2533825 2533843 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd gabP 2794262 2794280 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd csrA 2819268 2819286 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd fbaA 3071219 3071237 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd secA 108288 108306 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd chiP 708048 708066 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd ldtB 855828 855846 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd dhaR 1250961 1250979 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd rluB 1326509 1326527 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd ftsZ 105177 105195 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd aroP 121652 121670 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd cyoA 451679 451697 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd ybaN 490879 490897 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd cstA 629843 629861 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd csgD 1103365 1103383 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd sstT 3239781 3239799 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd yhbE 3332790 3332808 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd ompR 3536681 3536699 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd yhiD 3655998 3656016 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd yhjD 3673079 3673097 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd uvrA 4274135 4274153 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd glyY 4392247 4392265 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd osmY 4611140 4611158 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd gapA 1862782 1862800 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd mglB 2240407 2240425 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd cirA 2246959 2246977 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd proV 2804610 2804628 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd yqcG 2905515 2905533 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd galR 2976250 2976268 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd yqgC 3085924 3085942 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd nlpC 1792635 1792653 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd ansB 3100863 3100881 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd yaeI 185239 185257 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd tig 455170 455188 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd ompF 987133 987151 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd yceD 1146764 1146782 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd gntK 3577753 3577771 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd gadF 3658732 3658750 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd atpC 3915888 3915906 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd yjaG 4199501 4199519 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd ytfJ 4439452 4439470 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd iraP 401334 401352 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd sraA 459021 459039 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd cstA 629827 629845 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd ompF 987173 987191 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd csgD 1103394 1103412 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd pth 1258881 1258899 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd slyB 1719788 1719806 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd yobA 1925327 1925345 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd fadL 2461259 2461277 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd yqcG 2905639 2905657 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd ssrS 3055917 3055935 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd hpf 3345797 3345815 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd bfr 3467094 3467112 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd tag 3713159 3713177 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd mdtL 3891460 3891478 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd atpI 3922661 3922679 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd aslA 3986373 3986391 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd cpxR 4105965 4105983 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd yjcE 4279678 4279696 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd mgtA 4467624 4467642 nd nd 28526842
  HTRI00000832 TF ChIP-exo|RSATompR.all.regulon28526842 OmpR nd deoB 4619259 4619277 nd nd 28526842


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