RegulonDB RegulonDB 9.4: Regulatory NetWork Interactions Report
Regulatory NetWork Interactions Report


Table 1. Summary of differences comparing with the regulatory interactions from Ma.



Alon

Ma

New interactions according by :

346

93

New Regulatory interactions added in RegulonDB and EcoCyc

69

27

Sigma Factor Regulatory interactions added in RegulonDB and EcoCyc

32

22

already curated Regulatory interactions

130

13

already curated sigma factor Regulatory interactions

93


Interactions updated

3





Other kind of regulation


12

Interactions inferred from microarray data


10

Interactions not found in any literature source

19

9


Uri Alon NetWork Interactions.

1. Interactions not found in any literature source

        

TF operon name

Fis sdhCDAB-b0725-sucABCD

FlhDC fliE

FlhDC fliFGHIJK

RpoE rpoD

RpoN atoC

RpoN nycA

RpoN rtcR

MA NetWork Interactions.

1. Other kind of regulation

        

TF operon name

ryhB bfr

sohA degP

ryhB ftnA

ryhB fumA

luxS lsrR

RnK ndk

hfq ryhB

ryhB sdhCDAB

ryhB sodB

2. Interactions inferred from microarray data

        

TF operon name

ydeO appCB

ydeO gadA

ydeO gadBC

ydeO hdeD

ydeO slp

gadX slp

evgA ydeO

evgA yegZ

3. Interactions not found in any literature source

        

TF operon name

rpoS csgC

lsrR ego

hns evgA

EvgA mdtABCD

yhiE slp

gadX yhiD

RegulonDB