RegulonDB RegulonDB 10.9: Operon Form
   

fadR operon and associated TUs in Escherichia coli K-12 genome




Operon      
Name: fadR
This page displays every known transcription unit of this operon and their known regulation.


Transcription unit          
Name: fadR
Gene(s): fadR   Genome Browser M3D Gene expression COLOMBOS
Evidence: [BTEI] Boundaries of transcription experimentally identified
Reference(s): [1] DiRusso CC. 1988
Promoter
Name: fadRp
+1: 1234905
Sigma Factor: Sigma70 Sigmulon
Distance from start of the gene: 33
Sequence: atccctttttcttctttttgtctgctatcagcgtagttagccctctggtatgatgagtccAactttgttttgctgtgttat
                      -35                        -10        +1                   
Evidence: [ICWHO]
[TIM]
Reference(s): [1] DiRusso CC. 1988
[2] Huerta AM., et al., 2003
Terminator(s)
Type: rho-independent
Sequence: tttaaagagcAAACCCCTCAAACGAGGGGTTTtttgttgttt
Reference(s): [1] DiRusso CC. 1988
TF binding sites (TFBSs)
Type Transcription factor Function Promoter Binding Sites Growth Conditions Evidence (Confirmed, Strong, Weak) Reference(s)
LeftPos RightPos Central Rel-Pos Sequence
proximal FadR-acyl-CoA activator fadRp 1234887 1234904 -10.0 gtagttagccCTCTGGTATGATGAGTCCaactttgttt nd [AIBSCS] [3]
Allosteric regulation of RNA-polymerase
  Regulator Function Promoter target of RNApol Growth Conditions Note Evidence Reference
  DksA-ppGpp inhibition fadRp nd   [GEA] [4]
Evidence: [GEA] Gene expression analysis
Reference(s): [4] My L., et al., 2013


Transcription unit       
Name: fadR
Gene(s): fadR   Genome Browser M3D Gene expression COLOMBOS
Evidence: [AISGDTU] Automated inference that a single-gene directon is a transcription unit
[BTEI] Boundaries of transcription experimentally identified
Reference(s): [1] DiRusso CC. 1988
Promoter
Name: fadRp2
+1: 1234916
Distance from start of the gene: 22
Sequence: ttctttttgtctgctatcagcgtagttagccctctggtatgatgagtccaactttgttttGctgtgttatggaaatctcac
Evidence: [HTTIM]
Reference(s): [5] Mendoza-Vargas A., et al., 2009
Terminator(s)
Type: rho-independent
Sequence: tttaaagagcAAACCCCTCAAACGAGGGGTTTtttgttgttt
Reference(s): [1] DiRusso CC. 1988





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